Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003759

Physical Location & Seq

Genomic Coordinates Reverse (-)

18664748 .. 18676441

Gene Structure 11694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG175600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATACCCCAAATAGTCTCCTTCAACTCCCTAGCCGTCTCACTACTGGGGTTAGCTAAATCCACCGAGAAGAAAGTCTGCGACAGCAGATTGAGCGTGGTTTTGAAAGCAGCCCTTCCAATGTTCACTGCCACACCTTTCTCCTTGCTTTCGCAGATATCAGCAATGAGCTCTTGCACTTTTACGCTCCGGTTGGCTTGGTTTGCATCAAGAACTTTGGTGGCAAACAGCTACGAGTTACATATTTTGCGAAGGCTTACATTTGCATTGACCAAAAAAGAAAATGAGATACGGACATGTGAGCTGGTTCTCTTGGAGGCTTGCACACAGCTTTTGATCGTTGCTGGTAGCATTGATGCCAATAGCTTAGCAATAGTGACTGCTGCAACACATTTGCTATTGGACGTTGCAGCCTTTGCCACTCCCCATAGAAGAACTCGAGAAATAGATCTGGAGGTTGCAGTGTTGAATGTTGAACCCGCCGAATCAGTTGAACCCAGAACTGGAGGCGCAACCGGTCAGTTGGAGCTTCTTTCAACTGCAATAATGGATGGTTGGATGGCCGGACTTGGTGCTGCAATTCCTCCAAATACAGATGCTCTTGGTCAACTTCTATCTGAGTATTCGAAGCGGGTTTATAGTTCTCAGTTGCAGCACCTGAAGGACATTGCTGGTACATTGGCATCAGAAGGGGTAGAAGATGCAGCACAAGCTGGGAGGGATTCGACAGATATTGAAATATATGGGATGCAAGAAATCCCAACTGATGAATTGGCTGCACATTATGGAGAGGAAGAAATCCTGCATCTGCTGTCATTCAAATCTTTTGATTACGGCTTGATTTTGGAGATATATACTGTAATGGTTCCTATATTCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

293

Amino Acids

31.79

Weight (kDa)

4.89

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10470 AT5G10470 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460
fragaria_vesca	FvH4_1g19720 FvH4_1g19720
malus_domestica	MD00G1019700.v1.1 MD15G1313400.v1.1 MD15G1313600.v1.1
prunus_persica	Prupe.6G198800_v2.0.a1 Prupe.6G198800_v2.0.a1
pyrus_communis	pycom01g06640 pycom15g27690
rosa_chinensis	RchiOBHm_Chr2g0111301
rosa_laevigata	RLG00000007010 RLG00000017883
rosa_multiflora	Rmu_co8453119.1_g000001 Rmu_sc0001363.1_g000009 Rmu_sc0001363.1_g000010 Rmu_sc0036570.1_g000001 Rmu_sc0036571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132520
rosa_rugosa	Rorug02G0172700
rosa_samantha	Rh2AG225700 Rh2BG237400 Rh2CG228700 Rh2DG233200 Rh4DG010800 Rh5BG175600
rosa_wichuraiana	Rw2G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	480, 631
AcoI	YGGCCR	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	680
AcvI	CACGTG	1 cut(s)	879
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	296
AgeI	ACCGGT	1 cut(s)	515
AgsI	TTSAA	8 cut(s)	25, 106, 469, 476, 494, 537, 737, 820
AluBI	AGCT	8 cut(s)	56, 171, 231, 304, 331, 366, 529, 713
AluI	AGCT	8 cut(s)	56, 171, 231, 304, 331, 366, 529, 713
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	22, 43
AlwNI	CAGNNNCTG	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	7 cut(s)	110, 383, 410, 575, 652, 704, 776
AsiGI	ACCGGT	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	7 cut(s)	122, 370, 422, 562, 664, 716, 763
BccI	CCATC	2 cut(s)	545, 553
BceAI	ACGGC	2 cut(s)	20, 850
BcoDI	GTCTC	2 cut(s)	22, 43
BfaI	CTAG	1 cut(s)	32
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	7 cut(s)	111, 384, 411, 576, 653, 705, 777
BlpI	GCTNAGC	1 cut(s)	367
BlsI	GCNGC	7 cut(s)	112, 385, 412, 577, 654, 706, 778
BmeT110I	CYCGRG	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	867
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	7 cut(s)	215, 346, 586, 691, 692, 738, 814
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	473, 525
Bpu1102I	GCTNAGC	1 cut(s)	367
Bpu14I	TTCGAA	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	879
BsaWI	WCCGGW	2 cut(s)	189, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	51, 508
Bse3DI	GCAATG	2 cut(s)	171, 666
BseGI	GGATG	3 cut(s)	556, 564, 753
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	2 cut(s)	171, 666
BseMII	CTCAG	2 cut(s)	609, 659
BseNI	ACTGG	2 cut(s)	51, 508
BseXI	GCAGC	7 cut(s)	122, 370, 422, 562, 664, 716, 763
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	1 cut(s)	563
BshTI	ACCGGT	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	3 cut(s)	190, 516, 564
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	2 cut(s)	22, 43
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	336, 448
Bsp1720I	GCTNAGC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	480, 631
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	2 cut(s)	610, 658
BspLI	GGNNCC	1 cut(s)	867
BspT104I	TTCGAA	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	171, 666
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	51, 508
BssAI	RCCGGY	1 cut(s)	515
BssMI	GATC	2 cut(s)	336, 448
Bst4CI	ACNGT	1 cut(s)	859
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	879
BstBI	TTCGAA	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	367, 618, 645
BstF5I	GGATG	3 cut(s)	556, 564, 753
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	2 cut(s)	339, 451
BstMAI	GTCTC	2 cut(s)	22, 43
BstMBI	GATC	2 cut(s)	336, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 203, 416, 710
BstNSI	RCATGY	1 cut(s)	300
BstV1I	GCAGC	7 cut(s)	122, 370, 422, 562, 664, 716, 763
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	563
BtsCI	GGATG	3 cut(s)	556, 564, 753
BtsI	GCAGTG	2 cut(s)	126, 468
BtsIMutI	CAGTG	2 cut(s)	126, 468
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	658
CfoI	GCGC	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	675
CspAI	ACCGGT	1 cut(s)	515
CviAII	CATG	1 cut(s)	297
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	3 cut(s)	367, 618, 645
DpnI	GATC	2 cut(s)	338, 450
DpnII	GATC	2 cut(s)	336, 448
EaeI	YGGCCR	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	680
Eco72I	CACGTG	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	1 cut(s)	300
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	1 cut(s)	296
FauI	CCCGC	2 cut(s)	487, 624
Fnu4HI	GCNGC	7 cut(s)	111, 384, 411, 576, 653, 705, 777
FokI	GGATG	3 cut(s)	563, 571, 760
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	7 cut(s)	111, 384, 411, 576, 653, 705, 777
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	7 cut(s)	111, 384, 411, 576, 653, 705, 777
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	2 cut(s)	473, 525
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	3 cut(s)	190, 516, 564
HhaI	GCGC	1 cut(s)	512
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	608
HindII	GTYRAC	1 cut(s)	608
HinfI	GANTC	2 cut(s)	485, 722
HpaII	CCGG	3 cut(s)	190, 516, 564
Hpy166II	GTNNAC	2 cut(s)	126, 608
Hpy188I	TCNGA	2 cut(s)	619, 688
Hpy188III	TCNNGA	3 cut(s)	210, 440, 452
Hpy8I	GTNNAC	2 cut(s)	126, 608
HpyAV	CCTTC	5 cut(s)	31, 125, 246, 655, 683
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	2 cut(s)	405, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 203, 416, 710
HpyF3I	CTNAG	3 cut(s)	367, 618, 645
HpySE526I	ACGT	2 cut(s)	405, 878
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	1 cut(s)	510
Kzo9I	GATC	2 cut(s)	336, 448
LmnI	GCTCC	2 cut(s)	192, 526
Lsp1109I	GCAGC	7 cut(s)	122, 370, 422, 562, 664, 716, 763
LweI	GCATC	7 cut(s)	215, 346, 586, 691, 692, 738, 814
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	405, 878
MaeIII	GTNAC	2 cut(s)	237, 376
MalI	GATC	2 cut(s)	338, 450
MboI	GATC	2 cut(s)	336, 448
MboII	GAAGA	4 cut(s)	82, 444, 710, 806
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	579, 770
MmeI	TCCRAC	2 cut(s)	504, 536
MnlI	CCTC	6 cut(s)	310, 448, 500, 594, 711, 784
MspI	CCGG	3 cut(s)	190, 516, 564
MwoI	GCNNNNNNNGC	4 cut(s)	93, 203, 416, 710
NdeII	GATC	2 cut(s)	336, 448
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	867
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	626
PaeR7I	CTCGAG	1 cut(s)	438
PciI	ACATGT	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	485, 722
PinAI	ACCGGT	1 cut(s)	515
PkrI	GCNGC	7 cut(s)	112, 385, 412, 577, 654, 706, 778
PmaCI	CACGTG	1 cut(s)	879
PmlI	CACGTG	1 cut(s)	879
Ppu21I	YACGTR	1 cut(s)	879
PscI	ACATGT	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	173
PspCI	CACGTG	1 cut(s)	879
PspFI	CCCAGC	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	867
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SacI	GAGCTC	1 cut(s)	173
SatI	GCNGC	7 cut(s)	111, 384, 411, 576, 653, 705, 777
Sau3AI	GATC	2 cut(s)	336, 448
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	7 cut(s)	215, 346, 586, 691, 692, 738, 814
Sfr274I	CTCGAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
Sse9I	AATT	2 cut(s)	579, 770
SsiI	CCGC	2 cut(s)	480, 631
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	2 cut(s)	408, 881
TaqI	TCGA	3 cut(s)	439, 626, 725
TasI	AATT	2 cut(s)	579, 770
TfiI	GAWTC	2 cut(s)	485, 722
TscAI	CASTG	2 cut(s)	133, 468
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	7 cut(s)	110, 383, 410, 575, 652, 704, 776
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	783
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	2 cut(s)	133, 468
XceI	RCATGY	1 cut(s)	300
XhoI	CTCGAG	1 cut(s)	438
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.