Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001363.1

Orthogroup ID

OG0003759

Physical Location & Seq

Genomic Coordinates Reverse (-)

39583 .. 40813

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001363.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgattgttaatgtctgtccaaatgccttgaatttgtcggagacattatcatctctcaattttgcttctagagctcgaaatgctgttctaagccttggtaatcgagatacaattaagaaatggagagatacagcaaatgatgcacgtaaggagttgtatgaaaaggaaaaagaaagtcaagatctgaaacaagaggttttgggacttaaacatgcactgaaggatgccaatgatcagtgtgtcctactcttcaatgaagtccagaaggcgtggaaagtttcttatacattgcagtcagatttaaagtcagagaatattatgcttgcagataagcaaaagatagaaagggaacaaaacgcacagcttagaaaccaagttgctcaactgttacaggtagagcaagaccaaaagatacagattgaacaacgagattctacaattcaggttttgcaggttggtcatgtctgcttattattctcatttacttttgttaaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

166

Amino Acids

19.07

Weight (kDa)

7.68

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10470 AT5G10470 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460
fragaria_vesca	FvH4_1g19720 FvH4_1g19720
malus_domestica	MD00G1019700.v1.1 MD15G1313400.v1.1 MD15G1313600.v1.1
prunus_persica	Prupe.6G198800_v2.0.a1 Prupe.6G198800_v2.0.a1
pyrus_communis	pycom01g06640 pycom15g27690
rosa_chinensis	RchiOBHm_Chr2g0111301
rosa_laevigata	RLG00000007010 RLG00000017883
rosa_multiflora	Rmu_co8453119.1_g000001 Rmu_sc0001363.1_g000009 Rmu_sc0001363.1_g000010 Rmu_sc0036570.1_g000001 Rmu_sc0036571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132520
rosa_rugosa	Rorug02G0172700
rosa_samantha	Rh2AG225700 Rh2BG237400 Rh2CG228700 Rh2DG233200 Rh4DG010800 Rh5BG175600
rosa_wichuraiana	Rw2G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	31, 253, 422
AluBI	AGCT	2 cut(s)	74, 364
AluI	AGCT	2 cut(s)	74, 364
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	76
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	181
BmsI	GCATC	2 cut(s)	130, 214
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	181, 232
BspMI	ACCTGC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	181, 232
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	89, 365
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	184, 235
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	181, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 80, 140
BstNSI	RCATGY	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	215, 242
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	324
CviAII	CATG	2 cut(s)	212, 461
CviJI	RGCY	3 cut(s)	74, 93, 364
CviKI_1	RGCY	3 cut(s)	74, 93, 364
DdeI	CTNAG	2 cut(s)	89, 365
DpnI	GATC	2 cut(s)	183, 234
DpnII	GATC	2 cut(s)	181, 232
DraI	TTTAAA	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	215, 464
FaiI	YATR	5 cut(s)	159, 213, 285, 320, 462
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	2 cut(s)	211, 460
FbaI	TGATCA	1 cut(s)	232
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	69
Hin1II	CATG	2 cut(s)	215, 464
HinfI	GANTC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	40, 186, 298, 310
Hpy188III	TCNNGA	4 cut(s)	69, 104, 179, 262
HpyAV	CCTTC	2 cut(s)	214, 259
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	5 cut(s)	143, 215, 292, 326, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 80, 140
HpyF3I	CTNAG	2 cut(s)	89, 365
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	215, 464
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	181, 232
LpnPI	CCDG	4 cut(s)	275, 377, 428, 437
LweI	GCATC	2 cut(s)	130, 214
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	2 cut(s)	183, 234
MboI	GATC	2 cut(s)	181, 232
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	4 cut(s)	31, 58, 111, 438
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	1 cut(s)	187
MseI	TTAA	6 cut(s)	9, 114, 207, 302, 492, 499
MwoI	GCNNNNNNNGC	3 cut(s)	71, 80, 140
NdeII	GATC	2 cut(s)	181, 232
NlaIII	CATG	2 cut(s)	215, 464
NspI	RCATGY	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	6 cut(s)	9, 114, 207, 302, 492, 499
Sau3AI	GATC	2 cut(s)	181, 232
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	76, 148, 198, 366, 396, 447, 456, 498
SfaNI	GCATC	2 cut(s)	130, 214
Sse9I	AATT	4 cut(s)	31, 58, 111, 438
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	76, 103
TasI	AATT	4 cut(s)	31, 58, 111, 438
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	6 cut(s)	9, 114, 207, 302, 492, 499
Tru9I	TTAA	6 cut(s)	9, 114, 207, 302, 492, 499
TscAI	CASTG	2 cut(s)	222, 242
TspDTI	ATGAA	2 cut(s)	174, 270
TspRI	CASTG	2 cut(s)	222, 242
XapI	RAATTY	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.