RLG00000007010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003759
Physical Location & Seq
Forward (+)
12656358 .. 12656859
502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007010

Sequence Viewer

Length: 339 bp
ATGGAGAAGATAGTCCTAGACAAGAGATTGAGCATGCTTGTGAAAGCAGCTCTTCCAATGTCCATTGCCTCACCAGCCCTCATGCTTTCATCAACATCATCAATGAGCTGTTGCACTTTTACGCGCCGGTTAGCTTTGTTGTCATCTAAAACTTTTGCTGCAAACAAATGGGAATTGCATATTCTGAGAAGATTTCTCCATCTTGGTGATACTGGATTACAGGGCCATAGCGTCGGGAAAGCTTGGTCAAAGAAAGATGGCGTTTTCCTCCGAGCTCAAAAAGATTTCCGGGTGGAAGAAGCTCTCTCTGGGTATGGCTTTGCTTCTTCTTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.37

Weight (kDa)

9.96

Isoelectric Point (pI)

64.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AluBI AGCT 6 cut(s) 50, 108, 134, 242, 275, 302
AluI AGCT 6 cut(s) 50, 108, 134, 242, 275, 302
Alw21I GWGCWC 1 cut(s) 277
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 47, 158
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 63, 218
BanII GRGCYC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 59, 145
BccI CCATC 2 cut(s) 207, 251
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 17
BisI GCNGC 2 cut(s) 48, 159
BlsI GCNGC 2 cut(s) 49, 160
Bme1390I CCNGG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 290
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 59, 145
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 2 cut(s) 127, 289
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 277
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 288
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 59, 145
BsuRI GGCC 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 220
CviAII CATG 2 cut(s) 34, 82
CviJI RGCY 9 cut(s) 50, 77, 108, 134, 225, 242, 275, 302, 318
CviKI_1 RGCY 9 cut(s) 50, 77, 108, 134, 225, 242, 275, 302, 318
DdeI CTNAG 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 277
FaeI CATG 2 cut(s) 37, 85
FaiI YATR 5 cut(s) 35, 83, 180, 228, 315
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 2 cut(s) 33, 81
Fnu4HI GCNGC 2 cut(s) 48, 159
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 48, 159
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 125
GluI GCNGC 2 cut(s) 48, 159
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 127, 289
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 37, 85
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 240
HpaII CCGG 2 cut(s) 127, 289
HphI GGTGA 2 cut(s) 63, 218
Hpy188I TCNGA 2 cut(s) 186, 272
Hpy188III TCNNGA 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 114, 161, 178, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 37, 85
HspAI GCGC 1 cut(s) 124
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 6 cut(s) 87, 140, 198, 206, 294, 302
Lsp1109I GCAGC 2 cut(s) 59, 145
MaeI CTAG 1 cut(s) 17
MboII GAAGA 5 cut(s) 19, 44, 201, 308, 318
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 1 cut(s) 173
MnlI CCTC 3 cut(s) 79, 89, 278
MslI CAYNNNNRTG 2 cut(s) 38, 204
MspI CCGG 2 cut(s) 127, 289
MspR9I CCNGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 1 cut(s) 290
NlaIII CATG 2 cut(s) 37, 85
NspI RCATGY 1 cut(s) 37
PaeI GCATGC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 49, 160
Psp124BI GAGCTC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 38, 204
SacI GAGCTC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 57
SatI GCNGC 2 cut(s) 48, 159
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 277
SetI ASST 6 cut(s) 52, 110, 136, 244, 277, 304
SmiMI CAYNNNNRTG 2 cut(s) 38, 204
SphI GCATGC 1 cut(s) 37
Sse9I AATT 1 cut(s) 173
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 288
TasI AATT 1 cut(s) 173
TseI GCWGC 2 cut(s) 47, 158
TspDTI ATGAA 1 cut(s) 78
XceI RCATGY 1 cut(s) 37
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.