Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003759

Physical Location & Seq

Genomic Coordinates Forward (+)

15710099 .. 15710866

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0172700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTATCGTCGGCGATTGTGATCCTCATCCTCTTCATCCTAGCCGTCGCTGCTTTGCTCCTCTTCTACTACCTCCGCCGCCTCCGATCACAACCTCTCCGTCAACCAGCCGCCGCCGCGCCTGTCCAGAGCTCACACTCTCGCCGCCGGCAAGTCTCTCCTGCGCCTTCCTCCGCCGGCCTCCTCCTCCCGCGCTTCAAATTTTCCGACCTGAAACGCCCCGGCTCCGTCACCGTCGGCGGAGACTGCGCGATTTGCCTGGCGGAGTTCGAGCCGGACCACGTGCTCCGCCTCCTCCCTCTCTGCCTCCACGCCTTCCACGTGGATTGCATCGACACCTGGCTCGCCGGCGACTCGCTGATTTGTCCGGTTTGCCGCGCCGAGGTCTTCCGGTCCGACTCAGACCTCCTCCAGGCAGCCTCCGCCGGCGGAAGCTTCCGGCTGGCAATCGGCAGCGTCAGCCGCGGCCGGCGGCAAGACACGGCGGCGAATTCGAGCTCTCGAACTCACTCAATTCGCGGAGGTGAATTCGAGTATGTTGTGGATGAGGAGTGGGAGCTTCAACTGAGAGATGCGGTTCTTCTTCCTGTTCACGACGAAGGCGAGGATAACGAGATCGTCGCCGTCGTTATCGACAGTCAACCTCCGCCGTCTACGGCGCAAACTTTGGAGTATCAGAGCTCCTGCGGCATGATTTTCACAGGGAGCAGCCGTCGTTGGACGGAGTTATCCGAGGGACTGGAAATGATTTACCGGTGGCTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

255

Amino Acids

28.07

Weight (kDa)

5.7

Isoelectric Point (pI)

76.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 126	9e-12	Ring finger domain
zf-RING_11	PF17123	82 - 111	1.9e-09	RING-like zinc finger
zf-C3HC4	PF00097	83 - 125	2.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	83 - 125	9.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	95 - 126	7.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10470 AT5G10470 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460
fragaria_vesca	FvH4_1g19720 FvH4_1g19720
malus_domestica	MD00G1019700.v1.1 MD15G1313400.v1.1 MD15G1313600.v1.1
prunus_persica	Prupe.6G198800_v2.0.a1 Prupe.6G198800_v2.0.a1
pyrus_communis	pycom01g06640 pycom15g27690
rosa_chinensis	RchiOBHm_Chr2g0111301
rosa_laevigata	RLG00000007010 RLG00000017883
rosa_multiflora	Rmu_co8453119.1_g000001 Rmu_sc0001363.1_g000009 Rmu_sc0001363.1_g000010 Rmu_sc0036570.1_g000001 Rmu_sc0036571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132520
rosa_rugosa	Rorug02G0172700
rosa_samantha	Rh2AG225700 Rh2BG237400 Rh2CG228700 Rh2DG233200 Rh4DG010800 Rh5BG175600
rosa_wichuraiana	Rw2G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	653
AccII	CGCG	6 cut(s)	119, 193, 251, 378, 465, 519
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	3 cut(s)	200, 490, 527
AcvI	CACGTG	2 cut(s)	283, 322
AfiI	CCNNNNNNNGG	2 cut(s)	382, 412
AgeI	ACCGGT	1 cut(s)	753
AgsI	TTSAA	2 cut(s)	199, 563
AjnI	CCWGG	3 cut(s)	258, 338, 411
AluBI	AGCT	5 cut(s)	132, 435, 498, 559, 681
AluI	AGCT	5 cut(s)	132, 435, 498, 559, 681
Alw21I	GWGCWC	4 cut(s)	134, 288, 500, 683
Alw26I	GTCTC	2 cut(s)	160, 237
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	2 cut(s)	178, 466
ApeKI	GCWGC	4 cut(s)	50, 416, 453, 708
ApoI	RAATTY	3 cut(s)	200, 490, 527
AsiGI	ACCGGT	1 cut(s)	753
AspLEI	GCGC	6 cut(s)	121, 166, 195, 251, 380, 661
AspS9I	GGNCC	2 cut(s)	277, 393
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	223, 536
AvaII	GGWCC	2 cut(s)	277, 393
BanII	GRGCYC	3 cut(s)	134, 500, 683
BbrPI	CACGTG	2 cut(s)	283, 322
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	4 cut(s)	134, 288, 500, 683
BbvI	GCAGC	4 cut(s)	37, 428, 465, 720
BceAI	ACGGC	6 cut(s)	29, 498, 608, 634, 672, 696
BciT130I	CCWGG	3 cut(s)	260, 340, 413
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	160, 237
BfaI	CTAG	1 cut(s)	41
Bme1390I	CCNGG	4 cut(s)	222, 260, 340, 413
Bme18I	GGWCC	2 cut(s)	277, 393
BmgT120I	GGNCC	2 cut(s)	277, 393
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	4 cut(s)	222, 260, 340, 413
BmsI	GCATC	2 cut(s)	339, 562
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	2 cut(s)	283, 322
BsaBI	GATNNNNATC	2 cut(s)	20, 26
BsaJI	CCNNGG	4 cut(s)	220, 381, 463, 732
BsaWI	WCCGGW	3 cut(s)	367, 390, 753
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 697, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 412
Bse118I	RCCGGY	6 cut(s)	147, 176, 347, 425, 468, 753
Bse1I	ACTGG	1 cut(s)	744
Bse8I	GATNNNNATC	2 cut(s)	20, 26
BseBI	CCWGG	3 cut(s)	260, 340, 413
BseDI	CCNNGG	4 cut(s)	220, 381, 463, 732
BseGI	GGATG	3 cut(s)	27, 36, 550
BseJI	GATNNNNATC	2 cut(s)	20, 26
BseLI	CCNNNNNNNGG	2 cut(s)	382, 412
BseMII	CTCAG	2 cut(s)	414, 557
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	6 cut(s)	50, 173, 176, 284, 398, 563
BseX3I	CGGCCG	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	37, 428, 465, 720
Bsh1236I	CGCG	6 cut(s)	119, 193, 251, 378, 465, 519
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	180, 468
BshTI	ACCGGT	1 cut(s)	753
BsiEI	CGRYCG	1 cut(s)	469
BsiHKAI	GWGCWC	4 cut(s)	134, 288, 500, 683
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	2 cut(s)	382, 412
BsmAI	GTCTC	2 cut(s)	160, 237
BsmFI	GGGAC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	180, 468
Bsp1286I	GDGCHC	4 cut(s)	134, 288, 500, 683
Bsp143I	GATC	3 cut(s)	21, 86, 615
BspANI	GGCC	2 cut(s)	180, 468
BspCNI	CTCAG	2 cut(s)	413, 558
BspFNI	CGCG	6 cut(s)	119, 193, 251, 378, 465, 519
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	16
BsrFI	RCCGGY	6 cut(s)	147, 176, 347, 425, 468, 753
BsrI	ACTGG	1 cut(s)	744
BssAI	RCCGGY	6 cut(s)	147, 176, 347, 425, 468, 753
BssECI	CCNNGG	4 cut(s)	220, 381, 463, 732
BssMI	GATC	3 cut(s)	21, 86, 615
Bst2UI	CCWGG	3 cut(s)	260, 340, 413
Bst4CI	ACNGT	2 cut(s)	235, 638
Bst6I	CTCTTC	2 cut(s)	38, 68
BstBAI	YACGTR	2 cut(s)	283, 322
BstC8I	GCNNGC	7 cut(s)	149, 178, 345, 349, 427, 444, 470
BstDEI	CTNAG	2 cut(s)	400, 566
BstDSI	CCRYGG	1 cut(s)	463
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	27, 36, 550
BstFNI	CGCG	6 cut(s)	119, 193, 251, 378, 465, 519
BstHHI	GCGC	6 cut(s)	121, 166, 195, 251, 380, 661
BstKTI	GATC	3 cut(s)	24, 89, 618
BstMAI	GTCTC	2 cut(s)	160, 237
BstMBI	GATC	3 cut(s)	21, 86, 615
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 116, 246, 255, 422, 459, 462, 687
BstNI	CCWGG	3 cut(s)	260, 340, 413
BstSCI	CCNGG	4 cut(s)	220, 258, 338, 411
BstUI	CGCG	6 cut(s)	119, 193, 251, 378, 465, 519
BstV1I	GCAGC	4 cut(s)	37, 428, 465, 720
BstV2I	GAAGAC	1 cut(s)	379
BstZI	CGGCCG	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	180, 468
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	27, 36, 550
Cac8I	GCNNGC	7 cut(s)	149, 178, 345, 349, 427, 444, 470
CfoI	GCGC	6 cut(s)	121, 166, 195, 251, 380, 661
Cfr10I	RCCGGY	6 cut(s)	147, 176, 347, 425, 468, 753
Cfr13I	GGNCC	2 cut(s)	277, 393
Cfr42I	CCGCGG	1 cut(s)	466
CpoI	CGGWCCG	1 cut(s)	393
CseI	GACGC	1 cut(s)	445
CspAI	ACCGGT	1 cut(s)	753
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CspI	CGGWCCG	1 cut(s)	393
CviAII	CATG	1 cut(s)	691
DdeI	CTNAG	2 cut(s)	400, 566
DpnI	GATC	3 cut(s)	23, 88, 617
DpnII	GATC	3 cut(s)	21, 86, 615
EaeI	YGGCCR	1 cut(s)	466
EagI	CGGCCG	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	38, 68
EarI	CTCTTC	2 cut(s)	38, 68
EciI	GGCGGA	8 cut(s)	65, 163, 255, 278, 278, 412, 444, 636
Ecl136II	GAGCTC	3 cut(s)	132, 498, 681
EclXI	CGGCCG	1 cut(s)	466
Eco24I	GRGCYC	3 cut(s)	134, 500, 683
Eco47I	GGWCC	2 cut(s)	277, 393
Eco52I	CGGCCG	1 cut(s)	466
Eco53kI	GAGCTC	3 cut(s)	132, 498, 681
Eco72I	CACGTG	2 cut(s)	283, 322
EcoICRI	GAGCTC	3 cut(s)	132, 498, 681
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoRI	GAATTC	2 cut(s)	490, 527
EcoRII	CCWGG	3 cut(s)	258, 338, 411
EcoT38I	GRGCYC	3 cut(s)	134, 500, 683
FaeI	CATG	1 cut(s)	694
FaiI	YATR	2 cut(s)	537, 692
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	1 cut(s)	690
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	653
FokI	GGATG	3 cut(s)	14, 23, 557
FriOI	GRGCYC	3 cut(s)	134, 500, 683
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	6 cut(s)	120, 165, 194, 250, 379, 660
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	180, 468
HgaI	GACGC	1 cut(s)	445
HhaI	GCGC	6 cut(s)	121, 166, 195, 251, 380, 661
Hin1II	CATG	1 cut(s)	694
Hin6I	GCGC	6 cut(s)	119, 164, 193, 249, 378, 659
HinP1I	GCGC	6 cut(s)	119, 164, 193, 249, 378, 659
HincII	GTYRAC	2 cut(s)	104, 641
HindII	GTYRAC	2 cut(s)	104, 641
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	2 cut(s)	353, 398
HphI	GGTGA	2 cut(s)	223, 536
Hpy166II	GTNNAC	4 cut(s)	104, 592, 641, 654
Hpy188I	TCNGA	6 cut(s)	86, 208, 397, 403, 678, 733
Hpy188III	TCNNGA	4 cut(s)	127, 501, 593, 765
Hpy8I	GTNNAC	4 cut(s)	104, 592, 641, 654
Hpy99I	CGWCG	7 cut(s)	13, 50, 239, 599, 623, 629, 717
HpyAV	CCTTC	3 cut(s)	177, 325, 593
HpyCH4III	ACNGT	2 cut(s)	235, 638
HpyCH4IV	ACGT	2 cut(s)	282, 321
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 116, 246, 255, 422, 459, 462, 687
HpyF3I	CTNAG	2 cut(s)	400, 566
HpySE526I	ACGT	2 cut(s)	282, 321
Hsp92II	CATG	1 cut(s)	694
HspAI	GCGC	6 cut(s)	119, 164, 193, 249, 378, 659
KroI	GCCGGC	5 cut(s)	147, 176, 347, 425, 468
KroNI	GCCGGC	5 cut(s)	149, 178, 349, 427, 470
KspI	CCGCGG	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	21, 86, 615
LmnI	GCTCC	6 cut(s)	63, 230, 291, 556, 686, 705
Lsp1109I	GCAGC	4 cut(s)	37, 428, 465, 720
LweI	GCATC	2 cut(s)	339, 562
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	2 cut(s)	282, 321
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	23, 88, 617
MboI	GATC	3 cut(s)	21, 86, 615
MboII	GAAGA	5 cut(s)	25, 55, 379, 572, 575
MhlI	GDGCHC	4 cut(s)	134, 288, 500, 683
MluCI	AATT	4 cut(s)	200, 490, 513, 527
MlyI	GAGTC	2 cut(s)	347, 392
MmeI	TCCRAC	3 cut(s)	231, 420, 698
MreI	CGCCGGCG	2 cut(s)	347, 425
MroNI	GCCGGC	5 cut(s)	147, 176, 347, 425, 468
MspA1I	CMGCKG	1 cut(s)	465
MspR9I	CCNGG	4 cut(s)	222, 260, 340, 413
MvaI	CCWGG	3 cut(s)	260, 340, 413
MvnI	CGCG	6 cut(s)	119, 193, 251, 378, 465, 519
MwoI	GCNNNNNNNGC	8 cut(s)	50, 116, 246, 255, 422, 459, 462, 687
NaeI	GCCGGC	5 cut(s)	149, 178, 349, 427, 470
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	21, 86, 615
NgoMIV	GCCGGC	5 cut(s)	147, 176, 347, 425, 468
NlaIII	CATG	1 cut(s)	694
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 600, 624
PdiI	GCCGGC	5 cut(s)	149, 178, 349, 427, 470
PinAI	ACCGGT	1 cut(s)	753
PleI	GAGTC	2 cut(s)	347, 392
PmaCI	CACGTG	2 cut(s)	283, 322
PmlI	CACGTG	2 cut(s)	283, 322
PpsI	GAGTC	2 cut(s)	347, 392
Ppu21I	YACGTR	2 cut(s)	283, 322
Psp124BI	GAGCTC	3 cut(s)	134, 500, 683
Psp6I	CCWGG	3 cut(s)	258, 338, 411
PspCI	CACGTG	2 cut(s)	283, 322
PspGI	CCWGG	3 cut(s)	258, 338, 411
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	277, 393
Rsr2I	CGGWCCG	1 cut(s)	393
RsrII	CGGWCCG	1 cut(s)	393
SacI	GAGCTC	3 cut(s)	134, 500, 683
SacII	CCGCGG	1 cut(s)	466
Sau3AI	GATC	3 cut(s)	21, 86, 615
Sau96I	GGNCC	2 cut(s)	277, 393
SchI	GAGTC	2 cut(s)	347, 392
ScrFI	CCNGG	4 cut(s)	222, 260, 340, 413
SduI	GDGCHC	4 cut(s)	134, 288, 500, 683
SfaNI	GCATC	2 cut(s)	339, 562
Sfr303I	CCGCGG	1 cut(s)	466
SgrAI	CRCCGGYG	2 cut(s)	347, 425
SgrBI	CCGCGG	1 cut(s)	466
SinI	GGWCC	2 cut(s)	277, 393
Sse9I	AATT	4 cut(s)	200, 490, 513, 527
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	3 cut(s)	134, 500, 683
StyD4I	CCNGG	4 cut(s)	220, 258, 338, 411
TaaI	ACNGT	2 cut(s)	235, 638
TaiI	ACGT	2 cut(s)	285, 324
TaqI	TCGA	6 cut(s)	270, 333, 494, 502, 531, 633
TasI	AATT	4 cut(s)	200, 490, 513, 527
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	50, 416, 453, 708
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	3 cut(s)	89, 217, 737
VpaK11BI	GGWCC	2 cut(s)	277, 393
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	3 cut(s)	200, 490, 527
XmiI	GTMKAC	1 cut(s)	653
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.