Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8453119.1

Orthogroup ID

OG0003759

Physical Location & Seq

Genomic Coordinates Reverse (-)

400 .. 1573

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8453119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgccttcccttctggagattgatcatccatgtgcacaaaggcaaattgcagatgctcgtcatgtgattcagtccattcctgaagaagatgataaccttcatgaacagtctcatgctcgcaaaccatctacagatttgggatatggtactgaaactgatgtggcccaatggaatgtcctgcagttcaatacaggctcaacaaccccattcatcatcaagtgtggagcaaactcaaattcagaattagttatcaaagcagattccaagattcaagagcctaaaggtggtgagattgtgagggttgtcccaagaccttcggttctagaaaatatgggccttgaggagatgaaacatgtattctcccaactccctgaggctctaagcttgcttgccttggcaaggactgcagatggaacacgagctcggtattctcggttgtaccggactttggccatgaaagttccctcactgagggatttagttggtgagcttgaaaaggggggagtcctaaaagatgtcaagtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000913 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009941 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019750 GO:0022402 GO:0022607 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0031967 GO:0031975 GO:0032506 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0061640 GO:0071840 GO:0071944 GO:0099515 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

175

Amino Acids

19.33

Weight (kDa)

5.96

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10470 AT5G10470 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460 AT5G65460
fragaria_vesca	FvH4_1g19720 FvH4_1g19720
malus_domestica	MD00G1019700.v1.1 MD15G1313400.v1.1 MD15G1313600.v1.1
prunus_persica	Prupe.6G198800_v2.0.a1 Prupe.6G198800_v2.0.a1
pyrus_communis	pycom01g06640 pycom15g27690
rosa_chinensis	RchiOBHm_Chr2g0111301
rosa_laevigata	RLG00000007010 RLG00000017883
rosa_multiflora	Rmu_co8453119.1_g000001 Rmu_sc0001363.1_g000009 Rmu_sc0001363.1_g000010 Rmu_sc0036570.1_g000001 Rmu_sc0036571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132520
rosa_rugosa	Rorug02G0172700
rosa_samantha	Rh2AG225700 Rh2BG237400 Rh2CG228700 Rh2DG233200 Rh4DG010800 Rh5BG175600
rosa_wichuraiana	Rw2G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	148, 440
AfiI	CCNNNNNNNGG	4 cut(s)	284, 399, 448, 471
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	187, 272, 494
AluBI	AGCT	3 cut(s)	384, 422, 490
AluI	AGCT	3 cut(s)	384, 422, 490
Alw21I	GWGCWC	2 cut(s)	37, 424
Alw26I	GTCTC	1 cut(s)	114
Alw44I	GTGCAC	1 cut(s)	33
AoxI	GGCC	3 cut(s)	162, 334, 450
ApaLI	GTGCAC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	163, 334
AsuHPI	GGTGA	2 cut(s)	299, 497
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	37, 424
BccI	CCATC	2 cut(s)	133, 404
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	3 cut(s)	129, 179, 405
BmgT120I	GGNCC	2 cut(s)	163, 334
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 399, 448, 471
Bse21I	CCTNAGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	4 cut(s)	284, 399, 448, 471
BseMII	CTCAG	2 cut(s)	363, 461
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	37
BshFI	GGCC	3 cut(s)	164, 336, 452
BsiHKAI	GWGCWC	2 cut(s)	37, 424
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	4 cut(s)	284, 399, 448, 471
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	3 cut(s)	164, 336, 452
Bsp1286I	GDGCHC	2 cut(s)	37, 424
Bsp143I	GATC	1 cut(s)	22
BspANI	GGCC	3 cut(s)	164, 336, 452
BspCNI	CTCAG	2 cut(s)	364, 462
BspHI	TCATGA	1 cut(s)	100
BspMAI	CTGCAG	2 cut(s)	183, 409
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	118, 386, 390
BstDEI	CTNAG	3 cut(s)	372, 380, 470
BstENI	CCTNNNNNAGG	2 cut(s)	397, 469
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	356
BstSFI	CTRYAG	3 cut(s)	129, 179, 405
BstSLI	GKGCMC	1 cut(s)	37
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	164, 336, 452
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	3 cut(s)	118, 386, 390
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	163, 334
Csp6I	GTAC	2 cut(s)	147, 439
CviAII	CATG	6 cut(s)	30, 62, 101, 113, 353, 454
CviJI	RGCY	9 cut(s)	164, 195, 277, 336, 377, 384, 422, 452, 490
CviKI_1	RGCY	9 cut(s)	164, 195, 277, 336, 377, 384, 422, 452, 490
CviQI	GTAC	2 cut(s)	147, 439
DdeI	CTNAG	3 cut(s)	372, 380, 470
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	422
EcoNI	CCTNNNNNAGG	2 cut(s)	397, 469
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	6 cut(s)	33, 65, 104, 116, 356, 457
FaiI	YATR	9 cut(s)	31, 63, 102, 114, 144, 332, 354, 455, 526
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	6 cut(s)	29, 61, 100, 112, 352, 453
FbaI	TGATCA	1 cut(s)	22
FokI	GGATG	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	424
FspBI	CTAG	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	164, 336, 452
HapII	CCGG	1 cut(s)	442
Hin1II	CATG	6 cut(s)	33, 65, 104, 116, 356, 457
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	4 cut(s)	67, 260, 268, 504
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	2 cut(s)	299, 497
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	5 cut(s)	14, 80, 101, 272, 323
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	15, 20, 107, 324
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	35, 50, 181, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	3 cut(s)	372, 380, 470
Hsp92II	CATG	6 cut(s)	33, 65, 104, 116, 356, 457
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	5 cut(s)	93, 177, 191, 384, 455
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	323
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	95, 98
MhlI	GDGCHC	2 cut(s)	37, 424
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	3 cut(s)	45, 235, 242
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	513
MnlI	CCTC	5 cut(s)	291, 334, 367, 465, 475
Mox20I	TGGCCA	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	6 cut(s)	33, 65, 104, 116, 356, 457
NspI	RCATGY	1 cut(s)	356
PagI	TCATGA	1 cut(s)	100
PciI	ACATGT	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	67, 260, 268
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PscI	ACATGT	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	163, 334
PstI	CTGCAG	2 cut(s)	183, 409
RsaI	GTAC	2 cut(s)	148, 440
RsaNI	GTAC	2 cut(s)	147, 439
RseI	CAYNNNNRTG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	424
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	2 cut(s)	163, 334
SchI	GAGTC	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	37, 424
SetI	ASST	6 cut(s)	99, 286, 316, 386, 424, 492
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	3 cut(s)	129, 179, 405
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	45, 235, 242
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	108
TasI	AATT	3 cut(s)	45, 235, 242
TfiI	GAWTC	3 cut(s)	67, 260, 268
TscAI	CASTG	1 cut(s)	474
TspDTI	ATGAA	5 cut(s)	89, 117, 199, 362, 470
TspRI	CASTG	1 cut(s)	474
VneI	GTGCAC	1 cut(s)	33
XagI	CCTNNNNNAGG	2 cut(s)	397, 469
XapI	RAATTY	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.