Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010422

Physical Location & Seq

Genomic Coordinates Forward (+)

34488994 .. 34492639

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1323900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGTCCCTAAATCCACCGCAAATTCCAGAGGCCGAGGCCGATTACGAGGGCTCGGACGAACTTCAAGACCAGCGCATCGTTGTTCCTACCAAACACATCACTATAGCCGGTAGCTTCGAAAAGAAACAACACTCATGGTTTATCAATTCTCATGTCCCGACAGACCTAACCATTCAAGTTCAAGGCATCACCTTCGACGTCCATAAGTATCCTTTGGTATCGAAATGTGGCTACATAGGTCGATTGGAATTTCATCCTTCACCTTCAAATTGCGGTTATGACCTCAAGCTTGAAAACTTCCCCGGCGGATCAGAAACCTTTGAAATCATTTTAAAATTCTGTTATGGTCTTCCAGTGGACTTGAACCCTAACAATATAGCTCCGTTAAGATGCGCCTCGGAATTTCTAGAAATGACTGAAGAAGTTCAGGATGGAAATCTCATTTCTAAGACTGAAGCTTTTCTCACCTTGGTTGTCCTTTCTTCACGGAAAGACACCATTGCTGTGCTTAAATCTTGTGAAACTCTCTCTCCGTGGGCTGAAAATCTTCAAATTGTCAGACGCTGCTGTGACTCAATCGCTTGGAAGGCTTCCAGAGAAAACGCCATTGGGGATGCAGACGGTCAAGAAGGTTGGTGGCTTAACCAAGTGTCTACCTTTCGAATAGATCATTTCATGAGGACTATAGCAGCAATAAAGGCAAAGAGTAACAGACCAGAGTTTGTGGGTAAATGTATCGTGCACTATGCAGAAAGATGGTTGACCGGCGTGGATATGGAGTTTGAAGGACTAAGAGGATATGGGCTTGGAAAAAATGACATGCAGTTCAGTGTATTGAATAGGAGGAAGGAGGACGGGGGTTATGAATACAGAAAGGAGCAAAAAGCAATTATTGAAAGCATAGTAAGCATACTACCTCCTCAAAACAAAGCTCTTCCATGTAAGTTCTTATTGCGGATGTTAAAGTTGGCCATGCTGTACTCTGCATCACCAGCGTTGATTTCAGAGCTTGAAAAGAGAGCCGGGATGATGTTAGAAGATGCCAATGTGAACGATTTGCTGATTCCTAGGTACTACAATGCAGATCAAGGGAAACTGGTTGATTCACCTGAAGAATGCACAATGCACGACATTGAAGTTGTGCAACGGATTGTGGAATATTTCTTGATGCATGAGCAGCAAGATCAGCAACAGAAGACTGGTAAAATTGCTGTTAGTAAGCTCTTAGACAACTACCTATCAGAGATTGCAGGAGACCCGAAACTCTCCATAACCAAGTTTCATGTAATGGCGGAATTACTGCCAGAAAATGCTCGAACATGTGATGATGGTCTTTACAGAGCCATCGATACCTATCTAAAGACTCATCCTACGCTGCCTGAGCATGACAGGAGAAGGCTATGCAGAATAATGAACTGCGATAAACTATCACTTGATGCATGCATGCATGCTGCACAAAATGATCGACTGCCTATGAGAACCATTGTCCAGGTTCTGTTCTCAGAGCAAGTAAAGATGAGGACAGTGATGCAAGGTAAGGAATCACCAAGCGGCGATAACTCTGAACAGGAGGGTAACCACTCATCAACAGATGCAGAGATTAAAAATCTTAAAGCAGAACTTGAGAGGGTAAAAATAAAGATGGCAGAGCTGCAGAGGGACTACTCTGAACTGCAACACGAGTATGAAAGGATAATAAGCAACAAGCAAAAGAATGTATCAGGTTGGAGTTTGGGATGGAGAAAAATCAAGAACTCTTTCCATACAAAAGTTGAGGAAAATGAACCTAGAAACAACCAACAAAGAACCAACCCATCTAGACGCAGAACCACCTCCATACAAAGGTCGTCAATGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0080022 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

620

Amino Acids

70.77

Weight (kDa)

6.2

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	212 - 481	3e-85	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10250 AT5G10250
malus_domestica	MD01G1030300.v1.1 MD15G1323900.v1.1
prunus_persica	Prupe.6G187200_v2.0.a1
pyrus_communis	pycom01g05810 pycom15g28570 pycom15g28590
rosa_chinensis	RchiOBHm_Chr2g0113481
rosa_laevigata	RLG00000018068
rosa_multiflora	Rmu_sc0000929.1_g000050 Rmu_sc0007415.1_g000020
rosa_roxburghii	Rroxscaffold_2G00129210
rosa_rugosa	Rorug02G0187800 Rorug02G0187800
rosa_samantha	Rh2AG242300 Rh2BG256300 Rh2CG246500 Rh2DG250300
rosa_wichuraiana	Rw0G018880 Rw2G018940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	653
AciI	CCGC	6 cut(s)	17, 273, 306, 955, 1292, 1551
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	4 cut(s)	21, 248, 335, 401
AcuI	CTGAAG	3 cut(s)	438, 474, 1131
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	980, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	1842
AflIII	ACRYGT	1 cut(s)	1319
AjnI	CCWGG	1 cut(s)	1488
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	8 cut(s)	114, 289, 380, 458, 932, 1009, 1222, 1651
AluI	AGCT	8 cut(s)	114, 289, 380, 458, 932, 1009, 1222, 1651
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	1248
Alw44I	GTGCAC	1 cut(s)	740
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	2 cut(s)	564, 1495
AoxI	GGCC	3 cut(s)	30, 36, 969
ApaLI	GTGCAC	1 cut(s)	740
ApeKI	GCWGC	6 cut(s)	564, 689, 1177, 1375, 1451, 1651
ApoI	RAATTY	4 cut(s)	21, 248, 335, 401
Asp700I	GAANNNNTTC	4 cut(s)	423, 459, 546, 1757
AspA2I	CCTAGG	1 cut(s)	1067
AspLEI	GCGC	2 cut(s)	75, 395
AsuC2I	CCSGG	2 cut(s)	303, 1024
AsuHPI	GGTGA	6 cut(s)	181, 252, 457, 981, 1098, 1536
AsuII	TTCGAA	2 cut(s)	117, 661
AvrII	CCTAGG	1 cut(s)	1067
BaeGI	GKGCMC	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	1679
BbsI	GAAGAC	2 cut(s)	341, 1202
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	6 cut(s)	551, 701, 1189, 1362, 1438, 1638
BccI	CCATC	7 cut(s)	425, 750, 1322, 1352, 1636, 1731, 1822
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	1490
BciVI	GTATCC	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	303, 1024
BcoDI	GTCTC	1 cut(s)	1248
BfaI	CTAG	4 cut(s)	407, 1068, 1788, 1818
BfmI	CTRYAG	3 cut(s)	102, 684, 1652
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	7 cut(s)	565, 690, 1178, 1376, 1452, 1552, 1652
BlnI	CCTAGG	1 cut(s)	1067
BlsI	GCNGC	7 cut(s)	566, 691, 1179, 1377, 1453, 1553, 1653
Bme1390I	CCNGG	3 cut(s)	303, 1024, 1490
BmrFI	CCNGG	3 cut(s)	303, 1024, 1490
BpiI	GAAGAC	2 cut(s)	341, 1202
Bpu10I	CCTNAGC	1 cut(s)	1380
Bpu14I	TTCGAA	2 cut(s)	117, 661
BpuEI	CTTGAG	2 cut(s)	269, 1643
BpuMI	CCSGG	2 cut(s)	303, 1024
Bsa29I	ATCGAT	1 cut(s)	1347
BsaBI	GATNNNNATC	2 cut(s)	435, 1353
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	1248
BsaJI	CCNNGG	6 cut(s)	33, 301, 396, 468, 533, 1067
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	1842
Bse118I	RCCGGY	2 cut(s)	107, 764
Bse1I	ACTGG	3 cut(s)	353, 1101, 1204
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	2 cut(s)	435, 1353
BseBI	CCWGG	1 cut(s)	1490
BseCI	ATCGAT	1 cut(s)	1347
BseDI	CCNNGG	6 cut(s)	33, 301, 396, 468, 533, 1067
BseGI	GGATG	7 cut(s)	253, 436, 619, 963, 1032, 1366, 1742
BseJI	GATNNNNATC	2 cut(s)	435, 1353
BseLI	CCNNNNNNNGG	1 cut(s)	1842
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	2 cut(s)	1371, 1515
BseNI	ACTGG	3 cut(s)	353, 1101, 1204
BseRI	GAGGAG	1 cut(s)	909
BseSI	GKGCMC	1 cut(s)	744
BseXI	GCAGC	6 cut(s)	551, 701, 1189, 1362, 1438, 1638
BsgI	GTGCAG	1 cut(s)	1437
BshFI	GGCC	3 cut(s)	32, 38, 971
BshVI	ATCGAT	1 cut(s)	1347
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	4 cut(s)	108, 303, 765, 1023
BslFI	GGGAC	2 cut(s)	140, 1673
BslI	CCNNNNNNNGG	1 cut(s)	1842
BsmAI	GTCTC	1 cut(s)	1248
BsmFI	GGGAC	2 cut(s)	140, 1673
BsmI	GAATGC	1 cut(s)	1121
BsnI	GGCC	3 cut(s)	32, 38, 971
Bso31I	GGTCTC	1 cut(s)	1248
Bsp119I	TTCGAA	2 cut(s)	117, 661
Bsp1286I	GDGCHC	2 cut(s)	53, 744
Bsp143I	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
BspACI	CCGC	6 cut(s)	17, 273, 306, 955, 1292, 1551
BspANI	GGCC	3 cut(s)	32, 38, 971
BspCNI	CTCAG	2 cut(s)	1372, 1514
BspDI	ATCGAT	1 cut(s)	1347
BspHI	TCATGA	1 cut(s)	675
BspMAI	CTGCAG	1 cut(s)	1656
BspPI	GGATC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	939
BspT104I	TTCGAA	2 cut(s)	117, 661
BspTNI	GGTCTC	1 cut(s)	1248
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	2 cut(s)	107, 764
BsrI	ACTGG	3 cut(s)	353, 1101, 1204
BssAI	RCCGGY	2 cut(s)	107, 764
BssECI	CCNNGG	6 cut(s)	33, 301, 396, 468, 533, 1067
BssMI	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	1679
BssT1I	CCWWGG	2 cut(s)	468, 1067
Bst2BI	CACGAG	1 cut(s)	1679
Bst2UI	CCWGG	1 cut(s)	1490
Bst4CI	ACNGT	2 cut(s)	623, 1525
Bst6I	CTCTTC	1 cut(s)	939
BstACI	GRCGYC	1 cut(s)	198
BstBI	TTCGAA	2 cut(s)	117, 661
BstC8I	GCNNGC	3 cut(s)	1441, 1445, 1449
BstDEI	CTNAG	5 cut(s)	447, 791, 1225, 1380, 1501
BstDSI	CCRYGG	1 cut(s)	533
BstEII	GGTNACC	1 cut(s)	1574
BstF5I	GGATG	7 cut(s)	253, 436, 619, 963, 1032, 1366, 1742
BstHHI	GCGC	2 cut(s)	75, 395
BstKTI	GATC	5 cut(s)	311, 670, 1087, 1186, 1465
BstMAI	GTCTC	1 cut(s)	1248
BstMBI	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
BstMWI	GCNNNNNNNGC	7 cut(s)	587, 698, 906, 992, 1177, 1186, 1381
BstNI	CCWGG	1 cut(s)	1490
BstNSI	RCATGY	5 cut(s)	823, 1323, 1443, 1447, 1451
BstPI	GGTNACC	1 cut(s)	1574
BstSCI	CCNGG	3 cut(s)	301, 1022, 1488
BstSFI	CTRYAG	3 cut(s)	102, 684, 1652
BstSLI	GKGCMC	1 cut(s)	744
BstV1I	GCAGC	6 cut(s)	551, 701, 1189, 1362, 1438, 1638
BstV2I	GAAGAC	2 cut(s)	341, 1202
Bsu15I	ATCGAT	1 cut(s)	1347
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	32, 38, 971
BsuTUI	ATCGAT	1 cut(s)	1347
BtgI	CCRYGG	1 cut(s)	533
BtsCI	GGATG	7 cut(s)	253, 436, 619, 963, 1032, 1366, 1742
BtsIMutI	CAGTG	3 cut(s)	360, 835, 1530
Cac8I	GCNNGC	3 cut(s)	1441, 1445, 1449
CaiI	CAGNNNCTG	2 cut(s)	564, 1495
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	2 cut(s)	75, 395
Cfr10I	RCCGGY	2 cut(s)	107, 764
ClaI	ATCGAT	1 cut(s)	1347
CseI	GACGC	2 cut(s)	570, 1830
Csp6I	GTAC	2 cut(s)	979, 1072
CviQI	GTAC	2 cut(s)	979, 1072
DdeI	CTNAG	5 cut(s)	447, 791, 1225, 1380, 1501
DpnI	GATC	5 cut(s)	310, 669, 1086, 1185, 1464
DpnII	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
DraI	TTTAAA	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	969
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
EciI	GGCGGA	2 cut(s)	321, 1307
Eco130I	CCWWGG	2 cut(s)	468, 1067
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	1248
Eco57I	CTGAAG	3 cut(s)	438, 474, 1131
Eco91I	GGTNACC	1 cut(s)	1574
EcoO65I	GGTNACC	1 cut(s)	1574
EcoRII	CCWGG	1 cut(s)	1488
EcoT14I	CCWWGG	2 cut(s)	468, 1067
EcoT22I	ATGCAT	4 cut(s)	1173, 1441, 1445, 1449
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	468, 1067
FalI	AAGNNNNNCTT	2 cut(s)	1605, 1637
FaqI	GGGAC	2 cut(s)	140, 1673
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	7 cut(s)	565, 690, 1178, 1376, 1452, 1552, 1652
FokI	GGATG	7 cut(s)	240, 443, 626, 970, 1039, 1353, 1749
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	7 cut(s)	565, 690, 1178, 1376, 1452, 1552, 1652
FspBI	CTAG	4 cut(s)	407, 1068, 1788, 1818
GlaI	GCGC	2 cut(s)	74, 394
GluI	GCNGC	7 cut(s)	565, 690, 1178, 1376, 1452, 1552, 1652
HaeIII	GGCC	3 cut(s)	32, 38, 971
HapII	CCGG	4 cut(s)	108, 303, 765, 1023
HgaI	GACGC	2 cut(s)	570, 1830
HhaI	GCGC	2 cut(s)	75, 395
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	2 cut(s)	73, 393
HinP1I	GCGC	2 cut(s)	73, 393
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	2 cut(s)	287, 456
HinfI	GANTC	5 cut(s)	572, 1063, 1103, 1363, 1541
HpaII	CCGG	4 cut(s)	108, 303, 765, 1023
HphI	GGTGA	6 cut(s)	181, 252, 457, 981, 1098, 1536
Hpy166II	GTNNAC	5 cut(s)	358, 654, 742, 762, 1051
Hpy188I	TCNGA	9 cut(s)	55, 313, 400, 560, 1006, 1243, 1504, 1564, 1669
Hpy8I	GTNNAC	5 cut(s)	358, 654, 742, 762, 1051
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	8 cut(s)	202, 267, 273, 580, 623, 779, 841, 1389
HpyCH4III	ACNGT	2 cut(s)	623, 1525
HpyCH4IV	ACGT	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	7 cut(s)	587, 698, 906, 992, 1177, 1186, 1381
HpyF3I	CTNAG	5 cut(s)	447, 791, 1225, 1380, 1501
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	2 cut(s)	73, 393
Kzo9I	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
LguI	GCTCTTC	1 cut(s)	939
LmnI	GCTCC	2 cut(s)	385, 877
Lsp1109I	GCAGC	6 cut(s)	551, 701, 1189, 1362, 1438, 1638
MaeI	CTAG	4 cut(s)	407, 1068, 1788, 1818
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	569, 707, 1574
MalI	GATC	5 cut(s)	310, 669, 1086, 1185, 1464
MboI	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
MboII	GAAGA	8 cut(s)	341, 431, 474, 539, 926, 1049, 1124, 1207
MhlI	GDGCHC	2 cut(s)	53, 744
MlsI	TGGCCA	1 cut(s)	971
MluNI	TGGCCA	1 cut(s)	971
MlyI	GAGTC	2 cut(s)	566, 1357
MmeI	TCCRAC	1 cut(s)	1706
Mox20I	TGGCCA	1 cut(s)	971
Mph1103I	ATGCAT	4 cut(s)	1173, 1441, 1445, 1449
MroXI	GAANNNNTTC	4 cut(s)	423, 459, 546, 1757
MscI	TGGCCA	1 cut(s)	971
MseI	TTAA	7 cut(s)	332, 386, 510, 642, 962, 1602, 1611
MslI	CAYNNNNRTG	2 cut(s)	503, 1683
Msp20I	TGGCCA	1 cut(s)	971
MspI	CCGG	4 cut(s)	108, 303, 765, 1023
MspR9I	CCNGG	3 cut(s)	303, 1024, 1490
Mva1269I	GAATGC	1 cut(s)	1121
MvaI	CCWGG	1 cut(s)	1490
MwoI	GCNNNNNNNGC	7 cut(s)	587, 698, 906, 992, 1177, 1186, 1381
NciI	CCSGG	2 cut(s)	303, 1024
NdeII	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	4 cut(s)	1173, 1441, 1445, 1449
NspI	RCATGY	5 cut(s)	823, 1323, 1443, 1447, 1451
NspV	TTCGAA	2 cut(s)	117, 661
PaeI	GCATGC	3 cut(s)	1443, 1447, 1451
PagI	TCATGA	1 cut(s)	675
PciI	ACATGT	1 cut(s)	1319
PciSI	GCTCTTC	1 cut(s)	939
PctI	GAATGC	1 cut(s)	1121
PdmI	GAANNNNTTC	4 cut(s)	423, 459, 546, 1757
PfeI	GAWTC	3 cut(s)	1063, 1103, 1541
PkrI	GCNGC	7 cut(s)	566, 691, 1179, 1377, 1453, 1553, 1653
PleI	GAGTC	2 cut(s)	566, 1357
PpsI	GAGTC	2 cut(s)	566, 1357
PscI	ACATGT	1 cut(s)	1319
Psp6I	CCWGG	1 cut(s)	1488
PspEI	GGTNACC	1 cut(s)	1574
PspGI	CCWGG	1 cut(s)	1488
PstI	CTGCAG	1 cut(s)	1656
PstNI	CAGNNNCTG	2 cut(s)	564, 1495
RsaI	GTAC	2 cut(s)	980, 1073
RsaNI	GTAC	2 cut(s)	979, 1072
RseI	CAYNNNNRTG	2 cut(s)	503, 1683
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	7 cut(s)	332, 386, 510, 642, 962, 1602, 1611
SatI	GCNGC	7 cut(s)	565, 690, 1178, 1376, 1452, 1552, 1652
Sau3AI	GATC	5 cut(s)	308, 667, 1084, 1183, 1462
SchI	GAGTC	2 cut(s)	566, 1357
ScrFI	CCNGG	3 cut(s)	303, 1024, 1490
SduI	GDGCHC	2 cut(s)	53, 744
SfcI	CTRYAG	3 cut(s)	102, 684, 1652
SfuI	TTCGAA	2 cut(s)	117, 661
SmiMI	CAYNNNNRTG	2 cut(s)	503, 1683
SmlI	CTYRAG	2 cut(s)	284, 1622
SmoI	CTYRAG	2 cut(s)	284, 1622
SphI	GCATGC	3 cut(s)	1443, 1447, 1451
SsiI	CCGC	6 cut(s)	17, 273, 306, 955, 1292, 1551
SspI	AATATT	1 cut(s)	1160
SspMI	CTAG	4 cut(s)	407, 1068, 1788, 1818
StyD4I	CCNGG	3 cut(s)	301, 1022, 1488
StyI	CCWWGG	2 cut(s)	468, 1067
TaaI	ACNGT	2 cut(s)	623, 1525
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	8 cut(s)	117, 195, 221, 241, 661, 1315, 1347, 1465
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	1 cut(s)	1554
TfiI	GAWTC	3 cut(s)	1063, 1103, 1541
Tru1I	TTAA	7 cut(s)	332, 386, 510, 642, 962, 1602, 1611
Tru9I	TTAA	7 cut(s)	332, 386, 510, 642, 962, 1602, 1611
TscAI	CASTG	3 cut(s)	360, 835, 1530
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	6 cut(s)	564, 689, 1177, 1375, 1451, 1651
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	7 cut(s)	242, 664, 879, 1271, 1427, 1701, 1797
TspGWI	ACGGA	4 cut(s)	372, 502, 522, 1162
TspRI	CASTG	3 cut(s)	360, 835, 1530
VneI	GTGCAC	1 cut(s)	740
XapI	RAATTY	4 cut(s)	21, 248, 335, 401
XbaI	TCTAGA	2 cut(s)	406, 1817
XceI	RCATGY	5 cut(s)	823, 1323, 1443, 1447, 1451
XmaJI	CCTAGG	1 cut(s)	1067
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	4 cut(s)	423, 459, 546, 1757
XspI	CTAG	4 cut(s)	407, 1068, 1788, 1818
ZraI	GACGTC	1 cut(s)	199
Zsp2I	ATGCAT	4 cut(s)	1173, 1441, 1445, 1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.