Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010422

Physical Location & Seq

Genomic Coordinates Reverse (-)

5681034 .. 5684521

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGTTTACATGGCACCCGTCAGTCAGAGGTGGCAAACTCACATTCTCCCTCCATCTCTTTCAACAACATAACATTCAGAAATTTATTAGAGAGCATCACCCAACCAACCCCCTTAAGGGCTACATTATCACATCCCCACTCTCTTATATCATGTTATTCCATCCAAATCTCTCATCTTTCACTCCCTACACATCCGGCCAAAAGATGAACAAGTCCCTGAATCCACCGCAAATTCCAGAGGTCGACTACGAGGGCACTGAGCGCATCCTAGTTCCTCCAAAACACATCACTTTAGCTGGTGCCTTCGAAAAGAAACAACACTCCTGGTTTATCGATTCTCATGTACCAACGGACCTAACCATTCAAGTTGAAGGCGTCGCCTTTAACGTTCACAAGTGTCCCTTGCTGTCAAAATGTGGCTACATAGGTCGACGGGAATTTCATCCTTCACATTCAAACTTCGGCTATGAACTCGAGCTTGAAAACTTCCCCGGCGGATCAGAAACCTTTGAACTCATTTTAAAATTCTGTTATGGTCTTCCAGTGGGCTTAAACCCTAACAATATAGCTCCGCTGAGATGCGCCTCGGAATTTCTTGAAATGACTGAAGAAATTCAAGATGGAAATCTCATTTCTAAGACCGAATCTTTTCTCACGCTTGTAGTCCTTTCTTCATGGAAAGACACCGTTTCTGTGCTCAAATCTTGTGAAACTCTATCTCCATGGGCTGAAAATCTTCAAATTGTCAGACGCTGCTGCGACACAATCGCTTGGAAGGCTTCCAGAGAGAAGGTAATTCGGGATGCAGATGGTCAAGAAGGCTGGTGGCTTAACGAAGTGGCTACCTTTCGAATAGATCATTTCATGAGGACTATAACAGCAATAAAGGCAAGGAGTACCAGACCAGAGTTTGTAGGTAAATGTATTATGCACTATGCAGAAAGATGGTTGACAGGCATGGATGTGGAGTTTGAAGGACTAAGAGGATATGGGCTTGGAAAGAATGAGCTGCGGTTCAGTATATTGAATAGGAGCAAGGAAGACGGGGGTTACGAATACAGCAAGGAGCAAAAAGCAATTATTGAAAGCCTAGTAAGCATCCTACCTCCTCAAAACGAGGCTCTTCCATGTAAGTTCTTATTGCGGATGTTAAAGTTGGCCATGCTGTACTCTGCATCGCCAGCGTTGATTTCAGAGCTTGAAAAAAGAGCAGGGATGATGTTGAAAGATGCCAATGTGAACGATCTGCTGATTCCTAGTTACTATAATGCAGATCAAGGGAAACTGGCTAATTCACCTGAAGAATGCATGATGCACGACATTGAAGTTGTGCAACGGATTGTGGAATATTTCTTGATGCATGAGCAGCAAGAACAGCAACAGAAGACTGCTAAAATCGCTGTTAGTAAGCTGTTAGACAACTACCTAGCAGAGATTGCGGGAGACCCAAACCTCTCCATAACAAAGTTTCATGTATTGGCAGAATTACTGCCAGAAAATGCTCGAACATGTGATGATGGCCTTTACAGAGCCATTGATACCTATCTAAAGACTCATCCTACGCTGCCTGAGCATGACCGGAGAAGGCTATGCAGAATAATGAACTGTGATAAACTATCGCTTGATGCATGCATGCACGCTGCACTAAATGATCGACTGCCTATGAGAACCATTGTCCAGGTGCTGTTCTCAGAGCAAGTAAAGATGAGGACAGTGATGCAAGAGAAGGAATCACCAAGCAGCGATAGCTCTGAACAGCACGGGAACTACTCATCAACAGATGCAGAGATTAAAAATCTTAAAGCAGAACTTGAGAATGTAAAGATGAAGATGGCAGAGCTGCAGAGTGACTACTCCGAACTGCAACACGAGTATGAAAGGATAATAAGCAACAAGCAAAATAATGTATCGGGTTGGAGTTTGGGATGGAGAAAAATCAAGAACTCTTTCCATACAAAAGTTGAGGAAAATGAAACTGGAGGCAACCAACAAAGAACCAACCCAGCTAGGCGAAGAACCACCTCCATACAAAGGTCGTCAATATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0080022 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

683

Amino Acids

78.08

Weight (kDa)

6.56

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	275 - 544	6.3e-87	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10250 AT5G10250
malus_domestica	MD01G1030300.v1.1 MD15G1323900.v1.1
prunus_persica	Prupe.6G187200_v2.0.a1
pyrus_communis	pycom01g05810 pycom15g28570 pycom15g28590
rosa_chinensis	RchiOBHm_Chr2g0113481
rosa_laevigata	RLG00000018068
rosa_multiflora	Rmu_sc0000929.1_g000050 Rmu_sc0007415.1_g000020
rosa_roxburghii	Rroxscaffold_2G00129210
rosa_rugosa	Rorug02G0187800 Rorug02G0187800
rosa_samantha	Rh2AG242300 Rh2BG256300 Rh2CG246500 Rh2DG250300
rosa_wichuraiana	Rw0G018880 Rw2G018940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	12, 299
AccI	GTMKAC	2 cut(s)	243, 430
AciI	CCGC	6 cut(s)	227, 495, 572, 1012, 1144, 1439
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	1 cut(s)	505
AcoI	YGGCCR	2 cut(s)	196, 1158
AcsI	RAATTY	6 cut(s)	80, 231, 437, 524, 590, 612
AcuI	CTGAAG	2 cut(s)	627, 1320
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	3 cut(s)	345, 898, 1169
AfiI	CCNNNNNNNGG	3 cut(s)	115, 116, 2031
AflII	CTTAAG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	1508
AjnI	CCWGG	2 cut(s)	323, 1677
AluBI	AGCT	9 cut(s)	296, 478, 569, 1009, 1198, 1411, 1749, 1840, 2006
AluI	AGCT	9 cut(s)	296, 478, 569, 1009, 1198, 1411, 1749, 1840, 2006
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	1 cut(s)	1437
AlwI	GGATC	1 cut(s)	505
AlwNI	CAGNNNCTG	2 cut(s)	753, 1684
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	3 cut(s)	196, 1158, 1519
ApeKI	GCWGC	8 cut(s)	753, 756, 1009, 1366, 1564, 1640, 1740, 1840
ApoI	RAATTY	6 cut(s)	80, 231, 437, 524, 590, 612
Asp700I	GAANNNNTTC	4 cut(s)	612, 648, 735, 1946
AspLEI	GCGC	2 cut(s)	264, 584
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	3 cut(s)	89, 1287, 1725
AsuII	TTCGAA	2 cut(s)	306, 850
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	1160
BanI	GGYRCC	2 cut(s)	12, 299
BauI	CACGAG	1 cut(s)	1868
BbsI	GAAGAC	3 cut(s)	530, 1047, 1391
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	8 cut(s)	740, 743, 996, 1378, 1551, 1627, 1752, 1827
BccI	CCATC	8 cut(s)	60, 168, 614, 803, 939, 1511, 1825, 1920
BciT130I	CCWGG	2 cut(s)	325, 1679
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	1437
BfaI	CTAG	5 cut(s)	269, 1091, 1257, 1427, 2007
BfmI	CTRYAG	1 cut(s)	1841
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	8 cut(s)	754, 757, 1010, 1367, 1565, 1641, 1741, 1841
BlsI	GCNGC	8 cut(s)	755, 758, 1011, 1368, 1566, 1642, 1742, 1842
Bme1390I	CCNGG	3 cut(s)	325, 492, 1679
Bme18I	GGWCC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	14, 301
BmrFI	CCNGG	3 cut(s)	325, 492, 1679
BpiI	GAAGAC	3 cut(s)	530, 1047, 1391
BpmI	CTGGAG	1 cut(s)	1998
Bpu10I	CCTNAGC	1 cut(s)	1569
Bpu14I	TTCGAA	2 cut(s)	306, 850
BpuEI	CTTGAG	1 cut(s)	1832
BpuMI	CCSGG	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	333
BsaBI	GATNNNNATC	2 cut(s)	624, 1542
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	1437
BsaJI	CCNNGG	3 cut(s)	490, 585, 722
BsaWI	WCCGGW	1 cut(s)	1578
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 116, 2031
Bse1I	ACTGG	3 cut(s)	542, 1290, 1981
Bse8I	GATNNNNATC	2 cut(s)	624, 1542
BseBI	CCWGG	2 cut(s)	325, 1679
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	490, 585, 722
BseJI	GATNNNNATC	2 cut(s)	624, 1542
BseLI	CCNNNNNNNGG	3 cut(s)	115, 116, 2031
BseMII	CTCAG	4 cut(s)	249, 566, 1560, 1704
BseNI	ACTGG	3 cut(s)	542, 1290, 1981
BseRI	GAGGAG	1 cut(s)	1098
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	8 cut(s)	740, 743, 996, 1378, 1551, 1627, 1752, 1827
BseYI	CCCAGC	1 cut(s)	2002
BsgI	GTGCAG	1 cut(s)	1626
BshFI	GGCC	3 cut(s)	198, 1160, 1521
BshNI	GGYRCC	2 cut(s)	12, 299
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	3 cut(s)	195, 492, 1579
BslFI	GGGAC	2 cut(s)	199, 384
BslI	CCNNNNNNNGG	3 cut(s)	115, 116, 2031
BsmAI	GTCTC	1 cut(s)	1437
BsmFI	GGGAC	2 cut(s)	199, 384
BsmI	GAATGC	1 cut(s)	1310
BsnI	GGCC	3 cut(s)	198, 1160, 1521
Bso31I	GGTCTC	1 cut(s)	1437
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	2 cut(s)	306, 850
Bsp1286I	GDGCHC	2 cut(s)	257, 699
Bsp143I	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
Bsp19I	CCATGG	1 cut(s)	722
BspACI	CCGC	6 cut(s)	227, 495, 572, 1012, 1144, 1439
BspANI	GGCC	3 cut(s)	198, 1160, 1521
BspCNI	CTCAG	4 cut(s)	250, 567, 1561, 1703
BspDI	ATCGAT	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	2 cut(s)	14, 301
BspMAI	CTGCAG	1 cut(s)	1845
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	1 cut(s)	1128
BspT104I	TTCGAA	2 cut(s)	306, 850
BspT107I	GGYRCC	2 cut(s)	12, 299
BspTI	CTTAAG	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	1437
BsrI	ACTGG	3 cut(s)	542, 1290, 1981
BssECI	CCNNGG	3 cut(s)	490, 585, 722
BssMI	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
BssNI	GRCGYC	1 cut(s)	375
BssSI	CACGAG	1 cut(s)	1868
BssT1I	CCWWGG	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	1868
Bst2UI	CCWGG	2 cut(s)	325, 1679
Bst4CI	ACNGT	3 cut(s)	688, 1607, 1714
Bst6I	CTCTTC	1 cut(s)	1128
BstACI	GRCGYC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	1436
BstBI	TTCGAA	2 cut(s)	306, 850
BstC8I	GCNNGC	4 cut(s)	1182, 1630, 1634, 1638
BstDEI	CTNAG	6 cut(s)	258, 575, 636, 980, 1569, 1690
BstDSI	CCRYGG	1 cut(s)	722
BstHHI	GCGC	2 cut(s)	264, 584
BstKTI	GATC	5 cut(s)	500, 859, 1246, 1276, 1654
BstMAI	GTCTC	1 cut(s)	1437
BstMBI	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
BstNI	CCWGG	2 cut(s)	325, 1679
BstNSI	RCATGY	3 cut(s)	1512, 1632, 1636
BstSCI	CCNGG	3 cut(s)	323, 490, 1677
BstSFI	CTRYAG	1 cut(s)	1841
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	8 cut(s)	740, 743, 996, 1378, 1551, 1627, 1752, 1827
BstV2I	GAAGAC	3 cut(s)	530, 1047, 1391
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	198, 1160, 1521
BsuTUI	ATCGAT	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	722
BtgZI	GCGATG	1 cut(s)	1161
BtsIMutI	CAGTG	3 cut(s)	255, 549, 1719
Cac8I	GCNNGC	4 cut(s)	1182, 1630, 1634, 1638
CaiI	CAGNNNCTG	2 cut(s)	753, 1684
CciI	TCATGA	1 cut(s)	864
CfoI	GCGC	2 cut(s)	264, 584
Cfr13I	GGNCC	1 cut(s)	352
ClaI	ATCGAT	1 cut(s)	333
CseI	GACGC	2 cut(s)	364, 759
Csp6I	GTAC	3 cut(s)	344, 897, 1168
CviQI	GTAC	3 cut(s)	344, 897, 1168
DdeI	CTNAG	6 cut(s)	258, 575, 636, 980, 1569, 1690
DpnI	GATC	5 cut(s)	499, 858, 1245, 1275, 1653
DpnII	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
DraI	TTTAAA	1 cut(s)	522
EaeI	YGGCCR	2 cut(s)	196, 1158
Eam1104I	CTCTTC	1 cut(s)	1128
EarI	CTCTTC	1 cut(s)	1128
EciI	GGCGGA	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	1437
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	627, 1320
Eco88I	CYCGRG	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	323, 1677
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	4 cut(s)	1310, 1362, 1630, 1634
ErhI	CCWWGG	1 cut(s)	722
FalI	AAGNNNNNCTT	4 cut(s)	386, 418, 1794, 1826
FaqI	GGGAC	2 cut(s)	199, 384
FauI	CCCGC	1 cut(s)	1432
FblI	GTMKAC	2 cut(s)	243, 430
Fnu4HI	GCNGC	8 cut(s)	754, 757, 1010, 1367, 1565, 1641, 1741, 1841
Fsp4HI	GCNGC	8 cut(s)	754, 757, 1010, 1367, 1565, 1641, 1741, 1841
FspBI	CTAG	5 cut(s)	269, 1091, 1257, 1427, 2007
GlaI	GCGC	2 cut(s)	263, 583
GluI	GCNGC	8 cut(s)	754, 757, 1010, 1367, 1565, 1641, 1741, 1841
GsaI	CCCAGC	1 cut(s)	2006
GsuI	CTGGAG	1 cut(s)	1998
HaeIII	GGCC	3 cut(s)	198, 1160, 1521
HapII	CCGG	3 cut(s)	195, 492, 1579
HgaI	GACGC	2 cut(s)	364, 759
HhaI	GCGC	2 cut(s)	264, 584
Hin1I	GRCGYC	1 cut(s)	375
Hin6I	GCGC	2 cut(s)	262, 582
HinP1I	GCGC	2 cut(s)	262, 582
HincII	GTYRAC	3 cut(s)	244, 431, 951
HindII	GTYRAC	3 cut(s)	244, 431, 951
HinfI	GANTC	6 cut(s)	220, 335, 644, 1252, 1552, 1730
HpaII	CCGG	3 cut(s)	195, 492, 1579
HphI	GGTGA	3 cut(s)	89, 1287, 1725
Hpy166II	GTNNAC	6 cut(s)	6, 244, 391, 431, 951, 1240
Hpy188I	TCNGA	9 cut(s)	26, 78, 502, 589, 749, 1195, 1693, 1753, 1858
Hpy188III	TCNNGA	9 cut(s)	236, 596, 617, 783, 800, 815, 865, 1354, 1939
Hpy8I	GTNNAC	6 cut(s)	6, 244, 391, 431, 951, 1240
Hpy99I	CGWCG	2 cut(s)	380, 435
HpyAV	CCTTC	9 cut(s)	313, 365, 456, 769, 784, 812, 968, 1578, 1720
HpyCH4III	ACNGT	3 cut(s)	688, 1607, 1714
HpyCH4IV	ACGT	1 cut(s)	387
HpyF3I	CTNAG	6 cut(s)	258, 575, 636, 980, 1569, 1690
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	375
HspAI	GCGC	2 cut(s)	262, 582
Kzo9I	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	3 cut(s)	574, 1032, 1066
Lsp1109I	GCAGC	8 cut(s)	740, 743, 996, 1378, 1551, 1627, 1752, 1827
MaeI	CTAG	5 cut(s)	269, 1091, 1257, 1427, 2007
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	1049, 1259, 1847
MalI	GATC	5 cut(s)	499, 858, 1245, 1275, 1653
MboI	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
MhlI	GDGCHC	2 cut(s)	257, 699
MlsI	TGGCCA	1 cut(s)	1160
MluNI	TGGCCA	1 cut(s)	1160
MlyI	GAGTC	1 cut(s)	1546
MmeI	TCCRAC	1 cut(s)	1895
Mox20I	TGGCCA	1 cut(s)	1160
Mph1103I	ATGCAT	4 cut(s)	1310, 1362, 1630, 1634
MroXI	GAANNNNTTC	4 cut(s)	612, 648, 735, 1946
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	8 cut(s)	114, 384, 521, 551, 831, 1151, 1791, 1800
MslI	CAYNNNNRTG	2 cut(s)	962, 1872
Msp20I	TGGCCA	1 cut(s)	1160
MspA1I	CMGCKG	1 cut(s)	574
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	3 cut(s)	195, 492, 1579
MspR9I	CCNGG	3 cut(s)	325, 492, 1679
Mva1269I	GAATGC	1 cut(s)	1310
MvaI	CCWGG	2 cut(s)	325, 1679
NciI	CCSGG	1 cut(s)	492
NcoI	CCATGG	1 cut(s)	722
NdeII	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
NlaIV	GGNNCC	2 cut(s)	14, 301
NmuCI	GTSAC	1 cut(s)	1847
NsiI	ATGCAT	4 cut(s)	1310, 1362, 1630, 1634
NspI	RCATGY	3 cut(s)	1512, 1632, 1636
NspV	TTCGAA	2 cut(s)	306, 850
PaeI	GCATGC	2 cut(s)	1632, 1636
PaeR7I	CTCGAG	1 cut(s)	473
PagI	TCATGA	1 cut(s)	864
PciI	ACATGT	1 cut(s)	1508
PciSI	GCTCTTC	1 cut(s)	1128
PcsI	WCGNNNNNNNCGW	2 cut(s)	384, 1050
PctI	GAATGC	1 cut(s)	1310
PdmI	GAANNNNTTC	4 cut(s)	612, 648, 735, 1946
PfeI	GAWTC	5 cut(s)	220, 335, 644, 1252, 1730
PkrI	GCNGC	8 cut(s)	755, 758, 1011, 1368, 1566, 1642, 1742, 1842
PleI	GAGTC	1 cut(s)	1546
PpsI	GAGTC	1 cut(s)	1546
PscI	ACATGT	1 cut(s)	1508
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	323, 1677
PspFI	CCCAGC	1 cut(s)	2002
PspGI	CCWGG	2 cut(s)	323, 1677
PspN4I	GGNNCC	2 cut(s)	14, 301
PspPI	GGNCC	1 cut(s)	352
PspXI	VCTCGAGB	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	1845
PstNI	CAGNNNCTG	2 cut(s)	753, 1684
RsaI	GTAC	3 cut(s)	345, 898, 1169
RsaNI	GTAC	3 cut(s)	344, 897, 1168
RseI	CAYNNNNRTG	2 cut(s)	962, 1872
SalI	GTCGAC	2 cut(s)	242, 429
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	8 cut(s)	114, 384, 521, 551, 831, 1151, 1791, 1800
SatI	GCNGC	8 cut(s)	754, 757, 1010, 1367, 1565, 1641, 1741, 1841
Sau3AI	GATC	5 cut(s)	497, 856, 1243, 1273, 1651
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	1546
ScrFI	CCNGG	3 cut(s)	325, 492, 1679
SduI	GDGCHC	2 cut(s)	257, 699
SfcI	CTRYAG	1 cut(s)	1841
Sfr274I	CTCGAG	1 cut(s)	473
SfuI	TTCGAA	2 cut(s)	306, 850
SinI	GGWCC	1 cut(s)	352
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	962, 1872
SmlI	CTYRAG	3 cut(s)	113, 473, 1811
SmoI	CTYRAG	3 cut(s)	113, 473, 1811
SphI	GCATGC	2 cut(s)	1632, 1636
SsiI	CCGC	6 cut(s)	227, 495, 572, 1012, 1144, 1439
SspI	AATATT	1 cut(s)	1349
SspMI	CTAG	5 cut(s)	269, 1091, 1257, 1427, 2007
StyD4I	CCNGG	3 cut(s)	323, 490, 1677
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	3 cut(s)	688, 1607, 1714
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	8 cut(s)	243, 306, 333, 430, 474, 850, 1504, 1654
TaqII	GACCGA	1 cut(s)	656
TatI	WGTACW	1 cut(s)	1167
TfiI	GAWTC	5 cut(s)	220, 335, 644, 1252, 1730
Tru1I	TTAA	8 cut(s)	114, 384, 521, 551, 831, 1151, 1791, 1800
Tru9I	TTAA	8 cut(s)	114, 384, 521, 551, 831, 1151, 1791, 1800
TscAI	CASTG	3 cut(s)	262, 549, 1719
TseFI	GTSAC	1 cut(s)	1847
TseI	GCWGC	8 cut(s)	753, 756, 1009, 1366, 1564, 1640, 1740, 1840
Tsp45I	GTSAC	1 cut(s)	1847
TspGWI	ACGGA	2 cut(s)	365, 1351
TspRI	CASTG	3 cut(s)	262, 549, 1719
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	6 cut(s)	80, 231, 437, 524, 590, 612
XceI	RCATGY	3 cut(s)	1512, 1632, 1636
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	2 cut(s)	243, 430
XmnI	GAANNNNTTC	4 cut(s)	612, 648, 735, 1946
XspI	CTAG	5 cut(s)	269, 1091, 1257, 1427, 2007
Zsp2I	ATGCAT	4 cut(s)	1310, 1362, 1630, 1634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.