Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0010422

Physical Location & Seq

Genomic Coordinates Reverse (-)

178105 .. 180175

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgaagaagtgtctaactacaacacaaaatccaggcagtcattacaatcgcagtgatcaacttcaagaccaaagcattgtgattcccgccgccaaactcatcaatctagctgatggcttcgaaaagaaagaacactcctggttcatcacttctcatgtcccaacggaccttacaattcgagttcaagaaatcaccttcaatgttcacaagtatcctgtggtagcaaaatgtggctacataggtcaattggaatttcagccttcgatctcaaattttggcaatgacttgaagcttgaaaacttcccaggtggaccagaaacctttgaaatgattctaaaattctgttatggtctcccactggatttaaaccctaacaatatagctccactaagatgcggatcagactttttagaaatgactgaagaacttcaagctggaaatctgatttcaaagactgaatcttttctgacattggtagtcctttcttcttggaaagataccatcactgtacttatgtcctgtgaaactctatctccatgggctgagaatcttcaaattgtcagaagatgctgcgactcaattgcatggaaggctactagagaaaacaaaagtggggatgccgacggtcaagaacaagcttggtttcgtgaagtggccacctttcgaatagatcatttcatgagggtcatatcgacaataaaagcaaaaaatacaaggccagagtttataggtaaatgtatcatgcactatacagaaagatggttgccaggcatggatgtggagtttgaaggactaagaggatatggaattggaagaaatgacctgcagttcagtatcctgagtaacaggaaagaggatggcgattatggacacagccaggagcaaaaagcaattattgaaagcctcctaagcgtacttcctccccaaaatgaagctgttccatgtaaattcttattgcagatgttaaagatggcaatgatgtactcggcatcgccagctttgatttcagagcttgaaaagagagtagggatgatgttagaagatgctacagtcaatgatttgctgattccaagttataatattgcagaccaagggaaactggtgaagtctccagaagaacgcatgatgcacgacattgatgttgttcaaaggattgtggaatatttcttgatgcatgagcttcaacagcaagaaaagactggtagaaccaatatcagtaagctcttggacagctacctggctgagattgcaggagacccaaatctctcgataaccaagtttcaagtattggctgaatttctgcctgaaaatgctcgagcatgtgatgatggtctttatagggctattgacacctatctgaaggttacctacctacctgttcctatagtttttactttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0080022 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

466

Amino Acids

52.92

Weight (kDa)

5.24

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10250 AT5G10250
malus_domestica	MD01G1030300.v1.1 MD15G1323900.v1.1
prunus_persica	Prupe.6G187200_v2.0.a1
pyrus_communis	pycom01g05810 pycom15g28570 pycom15g28590
rosa_chinensis	RchiOBHm_Chr2g0113481
rosa_laevigata	RLG00000018068
rosa_multiflora	Rmu_sc0000929.1_g000050 Rmu_sc0007415.1_g000020
rosa_roxburghii	Rroxscaffold_2G00129210
rosa_rugosa	Rorug02G0187800 Rorug02G0187800
rosa_samantha	Rh2AG242300 Rh2BG256300 Rh2CG246500 Rh2DG250300
rosa_wichuraiana	Rw0G018880 Rw2G018940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1077
Acc36I	ACCTGC	1 cut(s)	831
AciI	CCGC	3 cut(s)	87, 90, 396
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	5 cut(s)	251, 271, 338, 947, 1295
AcuI	CTGAAG	2 cut(s)	441, 1379
AfaI	GTAC	3 cut(s)	510, 915, 983
AjnI	CCWGG	6 cut(s)	31, 137, 304, 766, 876, 1236
Alw26I	GTCTC	3 cut(s)	356, 1113, 1248
AlwI	GGATC	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	1314
AoxI	GGCC	2 cut(s)	654, 716
ApeKI	GCWGC	1 cut(s)	570
ApoI	RAATTY	5 cut(s)	251, 271, 338, 947, 1295
Asp700I	GAANNNNTTC	4 cut(s)	330, 426, 462, 936
AspS9I	GGNCC	2 cut(s)	166, 311
AsuHPI	GGTGA	2 cut(s)	184, 1114
AsuII	TTCGAA	2 cut(s)	120, 664
AvaI	CYCGRG	1 cut(s)	1314
AvaII	GGWCC	2 cut(s)	166, 311
BalI	TGGCCA	1 cut(s)	656
BarI	GAAGNNNNNNTAC	2 cut(s)	1352, 1384
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	6 cut(s)	107, 509, 753, 851, 964, 1322
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	6 cut(s)	33, 139, 306, 768, 878, 1238
BciVI	GTATCC	2 cut(s)	222, 845
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	3 cut(s)	356, 1113, 1248
BfaI	CTAG	2 cut(s)	107, 597
BfmI	CTRYAG	3 cut(s)	824, 1047, 1383
BfuAI	ACCTGC	1 cut(s)	831
BfuI	GTATCC	2 cut(s)	222, 845
BisI	GCNGC	2 cut(s)	90, 571
BlsI	GCNGC	2 cut(s)	91, 572
Bme1390I	CCNGG	6 cut(s)	33, 139, 306, 768, 878, 1238
Bme18I	GGWCC	2 cut(s)	166, 311
BmeT110I	CYCGRG	1 cut(s)	1314
BmgT120I	GGNCC	2 cut(s)	166, 311
BmrFI	CCNGG	6 cut(s)	33, 139, 306, 768, 878, 1238
BmsI	GCATC	7 cut(s)	383, 557, 607, 998, 1033, 1116, 1161
BpmI	CTGGAG	1 cut(s)	1095
Bpu10I	CCTNAGC	1 cut(s)	908
Bpu14I	TTCGAA	2 cut(s)	120, 664
BsaBI	GATNNNNATC	1 cut(s)	397
BsaI	GGTCTC	2 cut(s)	356, 1248
BsaJI	CCNNGG	3 cut(s)	304, 536, 1090
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bse1I	ACTGG	3 cut(s)	363, 1104, 1204
Bse3DI	GCAATG	2 cut(s)	286, 981
Bse8I	GATNNNNATC	1 cut(s)	397
BseBI	CCWGG	6 cut(s)	33, 139, 306, 768, 878, 1238
BseDI	CCNNGG	3 cut(s)	304, 536, 1090
BseGI	GGATG	4 cut(s)	622, 781, 862, 1035
BseJI	GATNNNNATC	1 cut(s)	397
BseMI	GCAATG	2 cut(s)	286, 981
BseMII	CTCAG	3 cut(s)	534, 830, 1233
BseNI	ACTGG	3 cut(s)	363, 1104, 1204
BseXI	GCAGC	1 cut(s)	557
BshFI	GGCC	2 cut(s)	656, 718
BsiHKCI	CYCGRG	1 cut(s)	1314
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	3 cut(s)	356, 1113, 1248
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	656, 718
Bso31I	GGTCTC	2 cut(s)	356, 1248
BsoBI	CYCGRG	1 cut(s)	1314
Bsp119I	TTCGAA	2 cut(s)	120, 664
Bsp143I	GATC	4 cut(s)	55, 264, 398, 670
Bsp19I	CCATGG	1 cut(s)	536
BspACI	CCGC	3 cut(s)	87, 90, 396
BspANI	GGCC	2 cut(s)	656, 718
BspCNI	CTCAG	3 cut(s)	535, 831, 1234
BspHI	TCATGA	1 cut(s)	678
BspMAI	CTGCAG	1 cut(s)	828
BspMI	ACCTGC	1 cut(s)	831
BspPI	GGATC	1 cut(s)	406
BspT104I	TTCGAA	2 cut(s)	120, 664
BspTNI	GGTCTC	2 cut(s)	356, 1248
BsrDI	GCAATG	2 cut(s)	286, 981
BsrI	ACTGG	3 cut(s)	363, 1104, 1204
BssECI	CCNNGG	3 cut(s)	304, 536, 1090
BssMI	GATC	4 cut(s)	55, 264, 398, 670
BssT1I	CCWWGG	2 cut(s)	536, 1090
Bst2UI	CCWGG	6 cut(s)	33, 139, 306, 768, 878, 1238
Bst4CI	ACNGT	3 cut(s)	508, 626, 1051
BstBI	TTCGAA	2 cut(s)	120, 664
BstC8I	GCNNGC	1 cut(s)	996
BstDEI	CTNAG	6 cut(s)	389, 543, 794, 839, 908, 1242
BstDSI	CCRYGG	1 cut(s)	536
BstEII	GGTNACC	1 cut(s)	1363
BstF5I	GGATG	4 cut(s)	622, 781, 862, 1035
BstKTI	GATC	4 cut(s)	58, 267, 401, 673
BstMAI	GTCTC	3 cut(s)	356, 1113, 1248
BstMBI	GATC	4 cut(s)	55, 264, 398, 670
BstMWI	GCNNNNNNNGC	5 cut(s)	590, 909, 995, 1186, 1247
BstNI	CCWGG	6 cut(s)	33, 139, 306, 768, 878, 1238
BstNSI	RCATGY	1 cut(s)	1323
BstPI	GGTNACC	1 cut(s)	1363
BstSCI	CCNGG	6 cut(s)	31, 137, 304, 766, 876, 1236
BstSFI	CTRYAG	3 cut(s)	824, 1047, 1383
BstV1I	GCAGC	1 cut(s)	557
BsuI	GTATCC	2 cut(s)	222, 845
BsuRI	GGCC	2 cut(s)	656, 718
BtgI	CCRYGG	1 cut(s)	536
BtgZI	GCGATG	1 cut(s)	975
BtsCI	GGATG	4 cut(s)	622, 781, 862, 1035
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	58, 356, 504
BveI	ACCTGC	1 cut(s)	831
Cac8I	GCNNGC	1 cut(s)	996
CciI	TCATGA	1 cut(s)	678
Cfr13I	GGNCC	2 cut(s)	166, 311
Csp6I	GTAC	3 cut(s)	509, 914, 982
CviQI	GTAC	3 cut(s)	509, 914, 982
DdeI	CTNAG	6 cut(s)	389, 543, 794, 839, 908, 1242
DpnI	GATC	4 cut(s)	57, 266, 400, 672
DpnII	GATC	4 cut(s)	55, 264, 398, 670
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	654
Eco130I	CCWWGG	2 cut(s)	536, 1090
Eco31I	GGTCTC	2 cut(s)	356, 1248
Eco47I	GGWCC	2 cut(s)	166, 311
Eco57I	CTGAAG	2 cut(s)	441, 1379
Eco88I	CYCGRG	1 cut(s)	1314
Eco91I	GGTNACC	1 cut(s)	1363
EcoO65I	GGTNACC	1 cut(s)	1363
EcoRII	CCWGG	6 cut(s)	31, 137, 304, 766, 876, 1236
EcoT14I	CCWWGG	2 cut(s)	536, 1090
EcoT22I	ATGCAT	1 cut(s)	1176
ErhI	CCWWGG	2 cut(s)	536, 1090
FaqI	GGGAC	1 cut(s)	143
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	90, 571
FokI	GGATG	4 cut(s)	629, 788, 869, 1042
Fsp4HI	GCNGC	2 cut(s)	90, 571
FspBI	CTAG	2 cut(s)	107, 597
GluI	GCNGC	2 cut(s)	90, 571
GsuI	CTGGAG	1 cut(s)	1095
HaeIII	GGCC	2 cut(s)	656, 718
HindIII	AAGCTT	2 cut(s)	290, 636
HinfI	GANTC	6 cut(s)	82, 331, 458, 547, 575, 1066
HphI	GGTGA	2 cut(s)	184, 1114
Hpy166II	GTNNAC	2 cut(s)	205, 311
Hpy188I	TCNGA	6 cut(s)	403, 444, 468, 563, 1009, 1359
Hpy188III	TCNNGA	9 cut(s)	65, 185, 629, 647, 679, 838, 1112, 1168, 1267
Hpy8I	GTNNAC	2 cut(s)	205, 311
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	5 cut(s)	205, 270, 583, 782, 1354
HpyCH4III	ACNGT	3 cut(s)	508, 626, 1051
HpyCH4V	TGCA	8 cut(s)	584, 745, 826, 958, 1085, 1129, 1174, 1250
HpyF10VI	GCNNNNNNNGC	5 cut(s)	590, 909, 995, 1186, 1247
HpyF3I	CTNAG	6 cut(s)	389, 543, 794, 839, 908, 1242
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	55, 264, 398, 670
LmnI	GCTCC	2 cut(s)	388, 880
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	7 cut(s)	383, 557, 607, 998, 1033, 1116, 1161
MaeI	CTAG	2 cut(s)	107, 597
MaeIII	GTNAC	2 cut(s)	842, 1363
MalI	GATC	4 cut(s)	57, 266, 400, 672
MboI	GATC	4 cut(s)	55, 264, 398, 670
MboII	GAAGA	8 cut(s)	16, 434, 477, 542, 576, 825, 1052, 1127
MfeI	CAATTG	2 cut(s)	245, 579
MlsI	TGGCCA	1 cut(s)	656
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	1 cut(s)	569
MnlI	CCTC	5 cut(s)	675, 791, 847, 914, 930
Mox20I	TGGCCA	1 cut(s)	656
Mph1103I	ATGCAT	1 cut(s)	1176
MroXI	GAANNNNTTC	4 cut(s)	330, 426, 462, 936
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	2 cut(s)	365, 965
MslI	CAYNNNNRTG	2 cut(s)	391, 776
Msp20I	TGGCCA	1 cut(s)	656
MspR9I	CCNGG	6 cut(s)	33, 139, 306, 768, 878, 1238
MunI	CAATTG	2 cut(s)	245, 579
MvaI	CCWGG	6 cut(s)	33, 139, 306, 768, 878, 1238
MwoI	GCNNNNNNNGC	5 cut(s)	590, 909, 995, 1186, 1247
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	4 cut(s)	55, 264, 398, 670
NmeAIII	GCCGAG	1 cut(s)	965
NsiI	ATGCAT	1 cut(s)	1176
NspI	RCATGY	1 cut(s)	1323
NspV	TTCGAA	2 cut(s)	120, 664
PaeR7I	CTCGAG	1 cut(s)	1314
PagI	TCATGA	1 cut(s)	678
PdmI	GAANNNNTTC	4 cut(s)	330, 426, 462, 936
PfeI	GAWTC	5 cut(s)	82, 331, 458, 547, 1066
PkrI	GCNGC	2 cut(s)	91, 572
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	1077
Psp6I	CCWGG	6 cut(s)	31, 137, 304, 766, 876, 1236
PspEI	GGTNACC	1 cut(s)	1363
PspGI	CCWGG	6 cut(s)	31, 137, 304, 766, 876, 1236
PspPI	GGNCC	2 cut(s)	166, 311
PspXI	VCTCGAGB	1 cut(s)	1314
PstI	CTGCAG	1 cut(s)	828
RsaI	GTAC	3 cut(s)	510, 915, 983
RsaNI	GTAC	3 cut(s)	509, 914, 982
RseI	CAYNNNNRTG	2 cut(s)	391, 776
SaqAI	TTAA	2 cut(s)	365, 965
SatI	GCNGC	2 cut(s)	90, 571
Sau3AI	GATC	4 cut(s)	55, 264, 398, 670
Sau96I	GGNCC	2 cut(s)	166, 311
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	6 cut(s)	33, 139, 306, 768, 878, 1238
SfaNI	GCATC	7 cut(s)	383, 557, 607, 998, 1033, 1116, 1161
SfcI	CTRYAG	3 cut(s)	824, 1047, 1383
Sfr274I	CTCGAG	1 cut(s)	1314
SfuI	TTCGAA	2 cut(s)	120, 664
SinI	GGWCC	2 cut(s)	166, 311
SlaI	CTCGAG	1 cut(s)	1314
SmiMI	CAYNNNNRTG	2 cut(s)	391, 776
SmlI	CTYRAG	1 cut(s)	1314
SmoI	CTYRAG	1 cut(s)	1314
SsiI	CCGC	3 cut(s)	87, 90, 396
SspI	AATATT	2 cut(s)	1081, 1163
SspMI	CTAG	2 cut(s)	107, 597
StyD4I	CCNGG	6 cut(s)	31, 137, 304, 766, 876, 1236
StyI	CCWWGG	2 cut(s)	536, 1090
TaaI	ACNGT	3 cut(s)	508, 626, 1051
TaqI	TCGA	7 cut(s)	120, 178, 263, 664, 692, 1268, 1315
TatI	WGTACW	2 cut(s)	508, 981
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	5 cut(s)	82, 331, 458, 547, 1066
Tru1I	TTAA	2 cut(s)	365, 965
Tru9I	TTAA	2 cut(s)	365, 965
TscAI	CASTG	3 cut(s)	58, 363, 511
TseI	GCWGC	1 cut(s)	570
TspDTI	ATGAA	4 cut(s)	17, 133, 667, 945
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	3 cut(s)	58, 363, 511
VpaK11BI	GGWCC	2 cut(s)	166, 311
XapI	RAATTY	5 cut(s)	251, 271, 338, 947, 1295
XceI	RCATGY	1 cut(s)	1323
XhoI	CTCGAG	1 cut(s)	1314
XmnI	GAANNNNTTC	4 cut(s)	330, 426, 462, 936
XspI	CTAG	2 cut(s)	107, 597
Zsp2I	ATGCAT	1 cut(s)	1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.