Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010422

Physical Location & Seq

Genomic Coordinates Forward (+)

24644415 .. 24645715

Gene Structure 1301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCCCTAAATCCACCGCAAATTCCAGAGGCCGAGGCCGATTACCAGGGCTCCGACAAACTTCACGACCAGCGCATCGTTGTTCCTACCAAACACATCACTATAGCCGGTAGCTTCGAAAAGAAACAACTGTCACGGTTTATCAATTCTCATGTCCCGACAGACCTAACCATTCAAGTTCAAGGCATCACCTTCGACGTCCACAAGTATCCTTTGGTATCGAAATGTGGCTACCTAGGTCGATTGGAAATTCATCCTTCACCTTCAAATTTCGGCTATGACCTCAAGCTTGAAAACTTCCCCGGCGGATCAGAAACCTTTGAAATCATTTTAAAATTCTGTTATGGTCTTCCAGTGGACTTGAACCCTAACAATGTAGCTCTGTTAAGATGCGCCTCGGAATTTCTAGAAATGACTGAAGAAGTTCAAGATGGAAATCTCATTTCTAAGACTGAAGCTTTTCTCACCTTGGTTGTCCTTTCTTCACGGAAAGACACCATTTCTGTGCTTAAATCTTGTGAAACTCTCTCTCCGTGGGCTGAAAATCTTCAAATTGTCAGACGCTGCTGTGACTCAATCGCTTGGAAGGCTTCCAGAGAAAACGCCATTGGGGATGCAGACGGTCAAGAAGGCTGGTGGCTTAACGAAGTGTCTACCTTTCGAATAGATCATTTCATGAGGACTATAGCAGCAATAAAGGCAAAGAGTAACAGACCAGAGTTTGTTGGTAAATGTATCGTGCACTATGCAGAAAGATGGTTGACAGGCGTGGATATAGAGTTTGAAGGACTAAGAGGATATGGGCCTGGAAAAAATGACATGCAGTTCAGTGTATTGAATAGGAGGAAGGAGGACGGGGGTTACGAATACAGCAAGGAGCAAAAAGCAATTATTGAAAGCATAGTAAGCATACTACCTCCTCAAAACAAAGCTCTTCCATGTAAGTTCTTATTGCAGATGTTAAAGTTGGCCATGCTGTACTCTGCATCACCAGCGTTGATTTCAGAGCTTGAAAAGAGAGCCGGGATGATGTTAGAAGATGCCAATGTGAACGATTTGCTGATTCCTAGGTACTACAATGCAGATCAAGGGAAACTGGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0080022 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

369

Amino Acids

41.46

Weight (kDa)

5.65

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	212 - 357	5.2e-36	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10250 AT5G10250
malus_domestica	MD01G1030300.v1.1 MD15G1323900.v1.1
prunus_persica	Prupe.6G187200_v2.0.a1
pyrus_communis	pycom01g05810 pycom15g28570 pycom15g28590
rosa_chinensis	RchiOBHm_Chr2g0113481
rosa_laevigata	RLG00000018068
rosa_multiflora	Rmu_sc0000929.1_g000050 Rmu_sc0007415.1_g000020
rosa_roxburghii	Rroxscaffold_2G00129210
rosa_rugosa	Rorug02G0187800 Rorug02G0187800
rosa_samantha	Rh2AG242300 Rh2BG256300 Rh2CG246500 Rh2DG250300
rosa_wichuraiana	Rw0G018880 Rw2G018940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	653
AciI	CCGC	2 cut(s)	17, 306
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	5 cut(s)	21, 249, 268, 335, 401
AcuI	CTGAAG	2 cut(s)	438, 474
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	980, 1073
AjnI	CCWGG	2 cut(s)	45, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	6 cut(s)	114, 289, 380, 458, 932, 1009
AluI	AGCT	6 cut(s)	114, 289, 380, 458, 932, 1009
Alw21I	GWGCWC	1 cut(s)	744
Alw44I	GTGCAC	1 cut(s)	740
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	564
AoxI	GGCC	4 cut(s)	30, 36, 803, 969
ApaLI	GTGCAC	1 cut(s)	740
ApeKI	GCWGC	2 cut(s)	564, 689
ApoI	RAATTY	5 cut(s)	21, 249, 268, 335, 401
Asp700I	GAANNNNTTC	3 cut(s)	423, 459, 546
AspA2I	CCTAGG	2 cut(s)	235, 1067
AspLEI	GCGC	2 cut(s)	75, 395
AspS9I	GGNCC	1 cut(s)	803
AsuC2I	CCSGG	2 cut(s)	303, 1024
AsuHPI	GGTGA	4 cut(s)	181, 252, 457, 981
AsuII	TTCGAA	2 cut(s)	117, 661
AvrII	CCTAGG	2 cut(s)	235, 1067
BaeGI	GKGCMC	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	551, 701
BccI	CCATC	2 cut(s)	425, 750
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	47, 807
BciVI	GTATCC	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	303, 1024
BfaI	CTAG	3 cut(s)	236, 407, 1068
BfmI	CTRYAG	2 cut(s)	102, 684
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	2 cut(s)	565, 690
BlnI	CCTAGG	2 cut(s)	235, 1067
BlsI	GCNGC	2 cut(s)	566, 691
Bme1390I	CCNGG	4 cut(s)	47, 303, 807, 1024
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	4 cut(s)	47, 303, 807, 1024
BmsI	GCATC	6 cut(s)	84, 195, 380, 604, 995, 1030
BpiI	GAAGAC	1 cut(s)	341
Bpu14I	TTCGAA	2 cut(s)	117, 661
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	303, 1024
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	8 cut(s)	33, 46, 235, 301, 396, 468, 533, 1067
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 514, 544
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	353, 1101
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	47, 807
BseDI	CCNNGG	8 cut(s)	33, 46, 235, 301, 396, 468, 533, 1067
BseGI	GGATG	3 cut(s)	253, 619, 1032
BseJI	GATNNNNATC	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	353, 1101
BseRI	GAGGAG	1 cut(s)	909
BseSI	GKGCMC	1 cut(s)	744
BseXI	GCAGC	2 cut(s)	551, 701
BshFI	GGCC	4 cut(s)	32, 38, 805, 971
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	3 cut(s)	108, 303, 1023
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	4 cut(s)	32, 38, 805, 971
Bsp119I	TTCGAA	2 cut(s)	117, 661
Bsp1286I	GDGCHC	2 cut(s)	53, 744
Bsp143I	GATC	3 cut(s)	308, 667, 1084
BspACI	CCGC	2 cut(s)	17, 306
BspANI	GGCC	4 cut(s)	32, 38, 805, 971
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	939
BspT104I	TTCGAA	2 cut(s)	117, 661
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	353, 1101
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	8 cut(s)	33, 46, 235, 301, 396, 468, 533, 1067
BssMI	GATC	3 cut(s)	308, 667, 1084
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	3 cut(s)	235, 468, 1067
Bst2UI	CCWGG	2 cut(s)	47, 807
Bst4CI	ACNGT	3 cut(s)	132, 138, 623
Bst6I	CTCTTC	1 cut(s)	939
BstACI	GRCGYC	1 cut(s)	198
BstBI	TTCGAA	2 cut(s)	117, 661
BstDEI	CTNAG	2 cut(s)	447, 791
BstDSI	CCRYGG	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	253, 619, 1032
BstHHI	GCGC	2 cut(s)	75, 395
BstKTI	GATC	3 cut(s)	311, 670, 1087
BstMBI	GATC	3 cut(s)	308, 667, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	587, 698, 906, 992
BstNI	CCWGG	2 cut(s)	47, 807
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	4 cut(s)	45, 301, 805, 1022
BstSFI	CTRYAG	2 cut(s)	102, 684
BstSLI	GKGCMC	1 cut(s)	744
BstV1I	GCAGC	2 cut(s)	551, 701
BstV2I	GAAGAC	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	4 cut(s)	32, 38, 805, 971
BtgI	CCRYGG	1 cut(s)	533
BtsCI	GGATG	3 cut(s)	253, 619, 1032
BtsIMutI	CAGTG	2 cut(s)	360, 835
CaiI	CAGNNNCTG	1 cut(s)	564
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	2 cut(s)	75, 395
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	803
CseI	GACGC	1 cut(s)	570
Csp6I	GTAC	2 cut(s)	979, 1072
CviAII	CATG	5 cut(s)	152, 676, 820, 939, 973
CviQI	GTAC	2 cut(s)	979, 1072
DdeI	CTNAG	2 cut(s)	447, 791
DpnI	GATC	3 cut(s)	310, 669, 1086
DpnII	GATC	3 cut(s)	308, 667, 1084
DraI	TTTAAA	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	969
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	3 cut(s)	235, 468, 1067
Eco24I	GRGCYC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	438, 474
EcoRII	CCWGG	2 cut(s)	45, 805
EcoT14I	CCWWGG	3 cut(s)	235, 468, 1067
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	3 cut(s)	235, 468, 1067
FaeI	CATG	5 cut(s)	155, 679, 823, 942, 976
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	151, 675, 819, 938, 972
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	2 cut(s)	565, 690
FokI	GGATG	3 cut(s)	240, 626, 1039
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	565, 690
FspBI	CTAG	3 cut(s)	236, 407, 1068
GlaI	GCGC	2 cut(s)	74, 394
GluI	GCNGC	2 cut(s)	565, 690
HaeIII	GGCC	4 cut(s)	32, 38, 805, 971
HapII	CCGG	3 cut(s)	108, 303, 1023
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	2 cut(s)	75, 395
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	5 cut(s)	155, 679, 823, 942, 976
Hin6I	GCGC	2 cut(s)	73, 393
HinP1I	GCGC	2 cut(s)	73, 393
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	2 cut(s)	287, 456
HinfI	GANTC	2 cut(s)	572, 1063
HpaII	CCGG	3 cut(s)	108, 303, 1023
HphI	GGTGA	4 cut(s)	181, 252, 457, 981
Hpy166II	GTNNAC	6 cut(s)	202, 358, 654, 742, 762, 1051
Hpy188I	TCNGA	5 cut(s)	55, 313, 400, 560, 1006
Hpy188III	TCNNGA	8 cut(s)	26, 65, 157, 407, 428, 594, 626, 676
Hpy8I	GTNNAC	6 cut(s)	202, 358, 654, 742, 762, 1051
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	7 cut(s)	202, 267, 273, 580, 623, 779, 841
HpyCH4III	ACNGT	3 cut(s)	132, 138, 623
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	7 cut(s)	617, 742, 749, 823, 955, 986, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	587, 698, 906, 992
HpyF3I	CTNAG	2 cut(s)	447, 791
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	155, 679, 823, 942, 976
HspAI	GCGC	2 cut(s)	73, 393
Kzo9I	GATC	3 cut(s)	308, 667, 1084
LguI	GCTCTTC	1 cut(s)	939
LmnI	GCTCC	2 cut(s)	56, 877
Lsp1109I	GCAGC	2 cut(s)	551, 701
LweI	GCATC	6 cut(s)	84, 195, 380, 604, 995, 1030
MaeI	CTAG	3 cut(s)	236, 407, 1068
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	132, 569, 707, 860
MalI	GATC	3 cut(s)	310, 669, 1086
MboI	GATC	3 cut(s)	308, 667, 1084
MboII	GAAGA	6 cut(s)	341, 431, 474, 539, 926, 1049
MhlI	GDGCHC	2 cut(s)	53, 744
MlsI	TGGCCA	1 cut(s)	971
MluCI	AATT	8 cut(s)	21, 145, 249, 268, 335, 401, 552, 888
MluNI	TGGCCA	1 cut(s)	971
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	971
MroXI	GAANNNNTTC	3 cut(s)	423, 459, 546
MscI	TGGCCA	1 cut(s)	971
MseI	TTAA	5 cut(s)	332, 386, 510, 642, 962
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	971
MspI	CCGG	3 cut(s)	108, 303, 1023
MspR9I	CCNGG	4 cut(s)	47, 303, 807, 1024
MvaI	CCWGG	2 cut(s)	47, 807
MwoI	GCNNNNNNNGC	4 cut(s)	587, 698, 906, 992
NciI	CCSGG	2 cut(s)	303, 1024
NdeII	GATC	3 cut(s)	308, 667, 1084
NlaIII	CATG	5 cut(s)	155, 679, 823, 942, 976
NlaIV	GGNNCC	1 cut(s)	52
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	132, 569
NspI	RCATGY	1 cut(s)	823
NspV	TTCGAA	2 cut(s)	117, 661
PagI	TCATGA	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PdmI	GAANNNNTTC	3 cut(s)	423, 459, 546
PfeI	GAWTC	1 cut(s)	1063
PkrI	GCNGC	2 cut(s)	566, 691
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Psp6I	CCWGG	2 cut(s)	45, 805
PspGI	CCWGG	2 cut(s)	45, 805
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	803
PstNI	CAGNNNCTG	1 cut(s)	564
RsaI	GTAC	2 cut(s)	980, 1073
RsaNI	GTAC	2 cut(s)	979, 1072
RseI	CAYNNNNRTG	1 cut(s)	503
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	5 cut(s)	332, 386, 510, 642, 962
SatI	GCNGC	2 cut(s)	565, 690
Sau3AI	GATC	3 cut(s)	308, 667, 1084
Sau96I	GGNCC	1 cut(s)	803
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	4 cut(s)	47, 303, 807, 1024
SduI	GDGCHC	2 cut(s)	53, 744
SfaNI	GCATC	6 cut(s)	84, 195, 380, 604, 995, 1030
SfcI	CTRYAG	2 cut(s)	102, 684
SfuI	TTCGAA	2 cut(s)	117, 661
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	8 cut(s)	21, 145, 249, 268, 335, 401, 552, 888
SsiI	CCGC	2 cut(s)	17, 306
SspMI	CTAG	3 cut(s)	236, 407, 1068
StyD4I	CCNGG	4 cut(s)	45, 301, 805, 1022
StyI	CCWWGG	3 cut(s)	235, 468, 1067
TaaI	ACNGT	3 cut(s)	132, 138, 623
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	5 cut(s)	117, 195, 221, 241, 661
TasI	AATT	8 cut(s)	21, 145, 249, 268, 335, 401, 552, 888
TatI	WGTACW	1 cut(s)	978
TfiI	GAWTC	1 cut(s)	1063
Tru1I	TTAA	5 cut(s)	332, 386, 510, 642, 962
Tru9I	TTAA	5 cut(s)	332, 386, 510, 642, 962
TscAI	CASTG	2 cut(s)	360, 835
TseFI	GTSAC	2 cut(s)	132, 569
TseI	GCWGC	2 cut(s)	564, 689
Tsp45I	GTSAC	2 cut(s)	132, 569
TspDTI	ATGAA	2 cut(s)	242, 664
TspGWI	ACGGA	2 cut(s)	502, 522
TspRI	CASTG	2 cut(s)	360, 835
VneI	GTGCAC	1 cut(s)	740
XapI	RAATTY	5 cut(s)	21, 249, 268, 335, 401
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	823
XmaJI	CCTAGG	2 cut(s)	235, 1067
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	3 cut(s)	423, 459, 546
XspI	CTAG	3 cut(s)	236, 407, 1068
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.