MD15G1325900.v1.1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012018
Physical Location & Seq
Reverse (-)
34850997 .. 34852340
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1325900.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGATTCTGGTAATAGTGGGAGTTTGCAATCCTCCAGCGGCGGCGATGACGAGTACGACTCGCGCGCCGAGTCAATCTCCGCCTTGCTCAGTAACCCACCGAGTCAACTCGGTCCCATGTCTAACCCACCACCACATCACCACCACCACATGGACCCTTTATCAAATATGTTCGATCCGTTATCATCCAGGCTCACCAACCCAAACCCACTCCTCAATTTCGACATGATGTGGTCCAAAACCCTAAGATCCGACCCCAATCCCATCGATCTCGGCGGCCTCAGCCAACCCTTTTTGACCAATCCCAGTATCAACCAATTAGGACAAAACAGAGGCGCCGCCGCCGCCGGCGGAGGAGGAGGCGGGTCGTCTACATTTGCGGCGCTTCAGATCCCACATGATCATCAAAACATTTCGGCCTCTTCTTCGGCTCCCGACAACCAAACCCACAACAACAACGGCGTCGTTCGGAATCCGAAGAAGAGGTCGAGAGCGTCGAGGCGAGCACCGACGACGGTGCTGACAACAGACACCACAAATTTCAGAGCCATGGTTCAGGAATTTACAGGTATCCCTGCTCCTCCATTTTCTTCTTCCTCGCCGTTCCCGAGGAGCAGATTGGACCTTTTTGGCAGTGCTGCGGCTGCCTCTTCATTGATGAGATCAGCACCCGGAGGAGGAGGAGGTGGTGGTTTGGGTTTGGACGCTCCTTCTTCATACCTTTTGAGGCCTTTTGCTCAAAAAGTGACGCACCAACCACCATCTTCATTGCTTGATCCCGTTAGTTCAACCTCCACAAATCACAATCTCCTCAATCTGCACAACCAAAACCCTTCATCATCATCTTCTTCACAAGTTCTCAATTTCCAATCCCTTTTTCAATCCCAGCAACAAAATCCTAAATACCCATTAATGTCCATTAATTCACCACCTCATCATCATCAAGCAGGCTCTTTGGGGGGGCCTCATCATCAACATTTTGGCTTGACTCAGCAGCAGCAGCAACAGCTTAATGTTAATGCGCTTTCCAACAACATCATCGTATCCTCCTCGGACGCCGCGCTTTCCAGGCACGACATTAGTAATGGTCCAAGTTGGGGTACTGACGGAACAGGGTCCAACAAGAACATCGACAACAACAATGTGGTTGATCATCAAAGACTAATGAGTTCTATCAATGGAAATTACGGCAATGGGAAACTCAACTACTCGGCTGCTGGTTCTTCGTCGAATATTGTGCTTAATGGCGGTAATGTGCCTCCAACTACTACTGCCGCTGCTACTACTACTACCGCCACTCGAAGCGAAGGTATGGTGGAATCATGGATTTGCTCCTCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

448

Amino Acids

46.95

Weight (kDa)

6.83

Isoelectric Point (pI)

61.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 168 - 195 1.2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65170 AT5G65170
fragaria_vesca FvH4_1g21110
malus_domestica MD01G1027700.v1.1 MD15G1325900.v1.1
prunus_persica Prupe.6G183200_v2.0.a1 Prupe.6G183200_v2.0.a1
pyrus_communis pycom01g05580 pycom15g28700
rosa_chinensis RchiOBHm_Chr2g0114891
rosa_laevigata RLG00000018131
rosa_multiflora Rmu_sc0002764.1_g000028
rosa_roxburghii Rroxscaffold_2G00130390
rosa_rugosa Rorug02G0191400
rosa_samantha Rh2AG250000 Rh2BG259600 Rh2CG254400 Rh2DG258200
rosa_wichuraiana Rw2G019500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 371
AccII CGCG 3 cut(s) 64, 66, 1061
AclWI GGATC 4 cut(s) 170, 243, 385, 770
AcsI RAATTY 2 cut(s) 538, 560
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 3 cut(s) 336, 462, 1056
AfaI GTAC 2 cut(s) 56, 1102
AfiI CCNNNNNNNGG 3 cut(s) 151, 677, 1097
AgsI TTSAA 2 cut(s) 789, 881
AjnI CCWGG 2 cut(s) 188, 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 861, 893
AluBI AGCT 1 cut(s) 1009
AluI AGCT 1 cut(s) 1009
Alw21I GWGCWC 1 cut(s) 508
AlwI GGATC 4 cut(s) 170, 243, 385, 770
Ama87I CYCGRG 1 cut(s) 607
AoxI GGCC 4 cut(s) 277, 417, 728, 962
ApeKI GCWGC 7 cut(s) 638, 644, 994, 997, 1000, 1214, 1277
ApoI RAATTY 2 cut(s) 538, 560
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AseI ATTAAT 2 cut(s) 911, 921
AspLEI GCGC 6 cut(s) 66, 68, 338, 385, 1024, 1063
AspS9I GGNCC 7 cut(s) 113, 154, 234, 622, 962, 1088, 1116
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 3 cut(s) 131, 187, 918
AvaI CYCGRG 1 cut(s) 607
AvaII GGWCC 6 cut(s) 113, 154, 234, 622, 1088, 1116
BanI GGYRCC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 508
BbvCI CCTCAGC 1 cut(s) 281
BbvI GCAGC 7 cut(s) 625, 631, 1006, 1009, 1012, 1201, 1264
BccI CCATC 2 cut(s) 272, 769
BceAI ACGGC 3 cut(s) 475, 586, 1204
BcgI CGANNNNNNTGC 4 cut(s) 499, 533, 1219, 1253
BciT130I CCWGG 2 cut(s) 190, 1069
BciVI GTATCC 2 cut(s) 581, 1054
BclI TGATCA 2 cut(s) 400, 1150
BcnI CCSGG 1 cut(s) 672
BfoI RGCGCY 2 cut(s) 339, 386
BfuI GTATCC 2 cut(s) 581, 1054
Bme1390I CCNGG 3 cut(s) 190, 672, 1069
Bme18I GGWCC 6 cut(s) 113, 154, 234, 622, 1088, 1116
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 7 cut(s) 113, 154, 234, 622, 962, 1088, 1116
BmiI GGNNCC 6 cut(s) 115, 156, 337, 432, 963, 1117
BmrFI CCNGG 3 cut(s) 190, 672, 1069
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
BplI GAGNNNNNCTC 4 cut(s) 44, 76, 62, 94
BpmI CTGGAG 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 672
Bsa29I ATCGAT 1 cut(s) 267
BsaHI GRCGYC 3 cut(s) 336, 462, 1056
BsaJI CCNNGG 3 cut(s) 549, 608, 1050
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 677, 1097
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 767, 1198
BseBI CCWGG 2 cut(s) 190, 1069
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 549, 608, 1050
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 151, 677, 1097
BseMI GCAATG 2 cut(s) 767, 1198
BseMII CTCAG 3 cut(s) 103, 295, 1004
BseNI ACTGG 1 cut(s) 306
BsePI GCGCGC 1 cut(s) 64
BseXI GCAGC 7 cut(s) 625, 631, 1006, 1009, 1012, 1201, 1264
BseYI CCCAGC 1 cut(s) 885
BsgI GTGCAG 1 cut(s) 803
Bsh1236I CGCG 3 cut(s) 64, 66, 1061
BshFI GGCC 4 cut(s) 279, 419, 730, 964
BshNI GGYRCC 1 cut(s) 335
BshVI ATCGAT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 2 cut(s) 348, 672
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 151, 677, 1097
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 4 cut(s) 279, 419, 730, 964
BsoBI CYCGRG 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
Bsp19I CCATGG 1 cut(s) 549
BspANI GGCC 4 cut(s) 279, 419, 730, 964
BspCNI CTCAG 3 cut(s) 102, 294, 1003
BspDI ATCGAT 1 cut(s) 267
BspFNI CGCG 3 cut(s) 64, 66, 1061
BspLI GGNNCC 6 cut(s) 115, 156, 337, 432, 963, 1117
BspPI GGATC 4 cut(s) 170, 243, 385, 770
BspT107I GGYRCC 1 cut(s) 335
BsrDI GCAATG 2 cut(s) 767, 1198
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 549, 608, 1050
BssHII GCGCGC 1 cut(s) 64
BssMI GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
BssNI GRCGYC 3 cut(s) 336, 462, 1056
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 2 cut(s) 190, 1069
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 3 cut(s) 427, 476, 655
BstACI GRCGYC 3 cut(s) 336, 462, 1056
BstC8I GCNNGC 4 cut(s) 66, 349, 504, 949
BstDEI CTNAG 5 cut(s) 89, 245, 281, 990, 1336
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 3 cut(s) 64, 66, 1061
BstH2I RGCGCY 2 cut(s) 339, 386
BstHHI GCGC 6 cut(s) 66, 68, 338, 385, 1024, 1063
BstKTI GATC 8 cut(s) 178, 251, 271, 393, 403, 665, 778, 1153
BstMBI GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
BstMWI GCNNNNNNNGC 6 cut(s) 282, 344, 644, 1000, 1006, 1069
BstNI CCWGG 2 cut(s) 190, 1069
BstSCI CCNGG 3 cut(s) 188, 670, 1067
BstUI CGCG 3 cut(s) 64, 66, 1061
BstV1I GCAGC 7 cut(s) 625, 631, 1006, 1009, 1012, 1201, 1264
BstX2I RGATCY 2 cut(s) 248, 390
BstYI RGATCY 2 cut(s) 248, 390
Bsu15I ATCGAT 1 cut(s) 267
BsuI GTATCC 2 cut(s) 581, 1054
BsuRI GGCC 4 cut(s) 279, 419, 730, 964
BsuTUI ATCGAT 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 549
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 640
Cac8I GCNNGC 4 cut(s) 66, 349, 504, 949
CfoI GCGC 6 cut(s) 66, 68, 338, 385, 1024, 1063
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 7 cut(s) 113, 154, 234, 622, 962, 1088, 1116
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 5 cut(s) 451, 483, 713, 757, 1064
Csp6I GTAC 2 cut(s) 55, 1101
CviAII CATG 6 cut(s) 118, 151, 226, 398, 550, 1323
CviQI GTAC 2 cut(s) 55, 1101
DdeI CTNAG 5 cut(s) 89, 245, 281, 990, 1336
DinI GGCGCC 1 cut(s) 337
DpnI GATC 8 cut(s) 177, 250, 270, 392, 402, 664, 777, 1152
DpnII GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
Eam1104I CTCTTC 3 cut(s) 427, 476, 655
EarI CTCTTC 3 cut(s) 427, 476, 655
EciI GGCGGA 2 cut(s) 70, 366
Eco130I CCWWGG 1 cut(s) 549
Eco147I AGGCCT 1 cut(s) 730
Eco47I GGWCC 6 cut(s) 113, 154, 234, 622, 1088, 1116
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 962
EcoRII CCWGG 2 cut(s) 188, 1067
EcoT14I CCWWGG 1 cut(s) 549
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 6 cut(s) 121, 154, 229, 401, 553, 1326
FaiI YATR 9 cut(s) 119, 152, 170, 227, 399, 551, 718, 1313, 1324
FaqI GGGAC 1 cut(s) 99
FatI CATG 6 cut(s) 117, 150, 225, 397, 549, 1322
FauI CCCGC 1 cut(s) 356
FbaI TGATCA 2 cut(s) 400, 1150
FblI GTMKAC 1 cut(s) 371
FokI GGATG 1 cut(s) 172
GlaI GCGC 6 cut(s) 65, 67, 337, 384, 1023, 1062
GsaI CCCAGC 1 cut(s) 889
GsuI CTGGAG 1 cut(s) 19
HaeII RGCGCY 2 cut(s) 339, 386
HaeIII GGCC 4 cut(s) 279, 419, 730, 964
HapII CCGG 2 cut(s) 348, 672
HgaI GACGC 5 cut(s) 451, 483, 713, 757, 1064
HhaI GCGC 6 cut(s) 66, 68, 338, 385, 1024, 1063
Hin1I GRCGYC 3 cut(s) 336, 462, 1056
Hin1II CATG 6 cut(s) 121, 154, 229, 401, 553, 1326
Hin6I GCGC 6 cut(s) 64, 66, 336, 383, 1022, 1061
HinP1I GCGC 6 cut(s) 64, 66, 336, 383, 1022, 1061
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 7 cut(s) 5, 59, 71, 103, 472, 988, 1319
HpaII CCGG 2 cut(s) 348, 672
HphI GGTGA 3 cut(s) 131, 187, 918
Hpy166II GTNNAC 2 cut(s) 107, 372
Hpy188I TCNGA 7 cut(s) 253, 390, 471, 477, 545, 1054, 1339
Hpy188III TCNNGA 4 cut(s) 434, 489, 557, 607
Hpy8I GTNNAC 2 cut(s) 107, 372
Hpy99I CGWCG 5 cut(s) 467, 499, 514, 517, 1231
HpyAV CCTTC 3 cut(s) 720, 843, 1301
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 2 cut(s) 28, 820
HpyF10VI GCNNNNNNNGC 6 cut(s) 282, 344, 644, 1000, 1006, 1069
HpyF3I CTNAG 5 cut(s) 89, 245, 281, 990, 1336
Hsp92I GRCGYC 3 cut(s) 336, 462, 1056
Hsp92II CATG 6 cut(s) 121, 154, 229, 401, 553, 1326
HspAI GCGC 6 cut(s) 64, 66, 336, 383, 1022, 1061
KasI GGCGCC 1 cut(s) 335
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Ksp22I TGATCA 2 cut(s) 400, 1150
Kzo9I GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
LmnI GCTCC 5 cut(s) 436, 583, 612, 712, 1337
Lsp1109I GCAGC 7 cut(s) 625, 631, 1006, 1009, 1012, 1201, 1264
MaeIII GTNAC 2 cut(s) 92, 745
MalI GATC 8 cut(s) 177, 250, 270, 392, 402, 664, 777, 1152
MboI GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
MflI RGATCY 2 cut(s) 248, 390
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 7 cut(s) 217, 317, 538, 560, 862, 922, 1183
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 4 cut(s) 53, 80, 112, 982
MmeI TCCRAC 4 cut(s) 276, 1053, 1143, 1286
MreI CGCCGGCG 1 cut(s) 347
MroNI GCCGGC 1 cut(s) 347
MseI TTAA 5 cut(s) 911, 921, 1011, 1017, 1242
MspA1I CMGCKG 2 cut(s) 39, 1277
MspI CCGG 2 cut(s) 348, 672
MspR9I CCNGG 3 cut(s) 190, 672, 1069
MvaI CCWGG 2 cut(s) 190, 1069
MvnI CGCG 3 cut(s) 64, 66, 1061
MwoI GCNNNNNNNGC 6 cut(s) 282, 344, 644, 1000, 1006, 1069
NaeI GCCGGC 1 cut(s) 349
NarI GGCGCC 1 cut(s) 336
NciI CCSGG 1 cut(s) 672
NcoI CCATGG 1 cut(s) 549
NdeII GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 6 cut(s) 121, 154, 229, 401, 553, 1326
NlaIV GGNNCC 6 cut(s) 115, 156, 337, 432, 963, 1117
NmeAIII GCCGAG 3 cut(s) 94, 252, 1190
NmuCI GTSAC 1 cut(s) 745
PauI GCGCGC 1 cut(s) 64
PceI AGGCCT 1 cut(s) 730
PcsI WCGNNNNNNNCGW 2 cut(s) 494, 605
PdiI GCCGGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 5, 472, 1319
PflMI CCANNNNNTGG 1 cut(s) 151
PleI GAGTC 4 cut(s) 53, 79, 111, 982
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 4 cut(s) 53, 79, 111, 982
PshBI ATTAAT 2 cut(s) 911, 921
Psp6I CCWGG 2 cut(s) 188, 1067
PspFI CCCAGC 1 cut(s) 885
PspGI CCWGG 2 cut(s) 188, 1067
PspN4I GGNNCC 6 cut(s) 115, 156, 337, 432, 963, 1117
PspPI GGNCC 7 cut(s) 113, 154, 234, 622, 962, 1088, 1116
PsuI RGATCY 2 cut(s) 248, 390
PteI GCGCGC 1 cut(s) 64
RsaI GTAC 2 cut(s) 56, 1102
RsaNI GTAC 2 cut(s) 55, 1101
SaqAI TTAA 5 cut(s) 911, 921, 1011, 1017, 1242
Sau3AI GATC 8 cut(s) 175, 248, 268, 390, 400, 662, 775, 1150
Sau96I GGNCC 7 cut(s) 113, 154, 234, 622, 962, 1088, 1116
SchI GAGTC 4 cut(s) 53, 80, 112, 982
ScrFI CCNGG 3 cut(s) 190, 672, 1069
SduI GDGCHC 1 cut(s) 508
SetI ASST 9 cut(s) 488, 571, 627, 688, 723, 794, 934, 1011, 1312
SfoI GGCGCC 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 347
SinI GGWCC 6 cut(s) 113, 154, 234, 622, 1088, 1116
Sse9I AATT 7 cut(s) 217, 317, 538, 560, 862, 922, 1183
SseBI AGGCCT 1 cut(s) 730
SspDI GGCGCC 1 cut(s) 335
SspI AATATT 1 cut(s) 1234
StuI AGGCCT 1 cut(s) 730
StyD4I CCNGG 3 cut(s) 188, 670, 1067
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 517
TaqI TCGA 8 cut(s) 174, 222, 267, 488, 497, 1131, 1229, 1300
TaqII GACCGA 1 cut(s) 101
TasI AATT 7 cut(s) 217, 317, 538, 560, 862, 922, 1183
TfiI GAWTC 3 cut(s) 5, 472, 1319
Tru1I TTAA 5 cut(s) 911, 921, 1011, 1017, 1242
Tru9I TTAA 5 cut(s) 911, 921, 1011, 1017, 1242
TscAI CASTG 1 cut(s) 640
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 7 cut(s) 638, 644, 994, 997, 1000, 1214, 1277
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 4 cut(s) 642, 705, 756, 825
TspGWI ACGGA 2 cut(s) 168, 1122
TspRI CASTG 1 cut(s) 640
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 6 cut(s) 113, 154, 234, 622, 1088, 1116
VspI ATTAAT 2 cut(s) 911, 921
XapI RAATTY 2 cut(s) 538, 560
XmiI GTMKAC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.