Rorug02G0191400

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012018
Physical Location & Seq
Forward (+)
17877454 .. 17879724
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0191400.1

Sequence Viewer

Length: 990 bp
ATGGAGGACTCTGAGTTCTCTAGCCTTCTGTGCCGAGAAGATGAGACTTGCTTGATGAATCAAGTGGAAGTTGATGATGAAGAATTAGAAAGTTTCTACCCGTTTTTGGTTTCTGAGAATGAGGACGAGTATATTGAGAATTTGGTTCAGAAGGAAAGTTATTGCTTTGGATCCAAAGGCTTTGTACCCTTTACTCATTGCTCTGCCACAAGCTGGTTCAAAGCTGCTCGCTTGGATTCTATTGATTGGATTTTCAATGCAAGGGCAGAATTTGGTTTCCGGTTGCAAACAGCATATTTATCTATCACATACTATGATCTGTTTCTTTCAAAGCGATCCATTGATGATGGGAAACTGTGGGCGTTTAGACTATTATCAGTGGCATGTTTATCCTTGGCGGCCAAGATGGAAGAAATCAAAGTACCATCTTTGTCAGAATTTCAGGTTCAAGATTATGATTTTGAAGGCAGAACGATTCAGAGAATGGAGCTAATGGTGTTAAGTACATTGGAATGGAAGTTGGGTTCAATCACTCCTTTTTCTTATCTGCATAACTTCGTTTATAAGTTCTGCTGTGAATGTGAATCCAGACCAAAAGGACTAGTCTCTGGTGCTATAAGACTCATCGTGGCAATGACAAAAGAGATTGATTTAATAGATACTCGGCCATCTGTTATTGCAGCAGCTGCAATATTAGCACTAGTTGATGGTCAGTTAACTAGAAAGCTTCTGGAGCTTAAGATAAGCTCGATCTCATTCTGGCATTCCCAAGATTATGAACATATATATTCGTGTTATAATCTTATGCAGGAAATTATGGAAAGAAAAGATAAGACACCACCCAAGTTTTCACTCTCTTCCCCTAATGTGTTACCAACACAATCAAGCTCAATCGATGTGCTTGAAATCTCAGTGGGCACAAAGAGAAGGCTTACCTTCAGTGACTCTGATGACCTCAGTTGCCCAACAAAGAAAATTCACATGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

329

Amino Acids

37.76

Weight (kDa)

4.88

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 74 - 174 9.3e-23 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65170 AT5G65170
fragaria_vesca FvH4_1g21110
malus_domestica MD01G1027700.v1.1 MD15G1325900.v1.1
prunus_persica Prupe.6G183200_v2.0.a1 Prupe.6G183200_v2.0.a1
pyrus_communis pycom01g05580 pycom15g28700
rosa_chinensis RchiOBHm_Chr2g0114891
rosa_laevigata RLG00000018131
rosa_multiflora Rmu_sc0002764.1_g000028
rosa_roxburghii Rroxscaffold_2G00130390
rosa_rugosa Rorug02G0191400
rosa_samantha Rh2AG250000 Rh2BG259600 Rh2CG254400 Rh2DG258200
rosa_wichuraiana Rw2G019500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 564, 798
AccB7I CCANNNNNTGG 1 cut(s) 213
AciI CCGC 1 cut(s) 398
AclWI GGATC 3 cut(s) 165, 178, 330
AcoI YGGCCR 2 cut(s) 399, 665
AcsI RAATTY 4 cut(s) 139, 269, 437, 975
AcuI CTGAAG 1 cut(s) 922
AfaI GTAC 3 cut(s) 186, 423, 505
AfiI CCNNNNNNNGG 2 cut(s) 106, 213
AflII CTTAAG 1 cut(s) 737
AgsI TTSAA 7 cut(s) 220, 256, 330, 449, 464, 528, 905
AhlI ACTAGT 2 cut(s) 601, 700
AloI GAACNNNNNNTCC 3 cut(s) 31, 508, 540
AluBI AGCT 8 cut(s) 213, 224, 490, 686, 727, 736, 747, 888
AluI AGCT 8 cut(s) 213, 224, 490, 686, 727, 736, 747, 888
Alw26I GTCTC 2 cut(s) 38, 610
AlwI GGATC 3 cut(s) 165, 178, 330
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 2 cut(s) 399, 665
ApeKI GCWGC 4 cut(s) 224, 680, 683, 686
ApoI RAATTY 4 cut(s) 139, 269, 437, 975
BaeGI GKGCMC 1 cut(s) 920
BamHI GGATCC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 211, 673, 692, 695
BccI CCATC 5 cut(s) 341, 400, 433, 676, 701
BcoDI GTCTC 2 cut(s) 38, 610
BcuI ACTAGT 2 cut(s) 601, 700
BfaI CTAG 4 cut(s) 21, 602, 701, 720
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 5 cut(s) 225, 399, 681, 684, 687
BlsI GCNGC 5 cut(s) 226, 400, 682, 685, 688
BmiI GGNNCC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 894
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 213
Bse3DI GCAATG 2 cut(s) 196, 639
BseCI ATCGAT 1 cut(s) 894
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 106, 213
BseMI GCAATG 2 cut(s) 196, 639
BseMII CTCAG 3 cut(s) 105, 924, 970
BseSI GKGCMC 1 cut(s) 920
BseXI GCAGC 4 cut(s) 211, 673, 692, 695
BshFI GGCC 2 cut(s) 401, 667
BshVI ATCGAT 1 cut(s) 894
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 106, 213
BsmAI GTCTC 2 cut(s) 38, 610
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 2 cut(s) 401, 667
Bsp1286I GDGCHC 1 cut(s) 920
Bsp143I GATC 4 cut(s) 170, 316, 335, 750
BspACI CCGC 1 cut(s) 398
BspANI GGCC 2 cut(s) 401, 667
BspCNI CTCAG 4 cut(s) 4, 106, 923, 969
BspDI ATCGAT 1 cut(s) 894
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 3 cut(s) 165, 178, 330
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 196, 639
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 4 cut(s) 170, 316, 335, 750
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 862
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 4 cut(s) 12, 114, 910, 956
BstKTI GATC 4 cut(s) 173, 319, 338, 753
BstMAI GTCTC 2 cut(s) 38, 610
BstMBI GATC 4 cut(s) 170, 316, 335, 750
BstMWI GCNNNNNNNGC 4 cut(s) 30, 686, 695, 733
BstNSI RCATGY 2 cut(s) 387, 985
BstSLI GKGCMC 1 cut(s) 920
BstV1I GCAGC 4 cut(s) 211, 673, 692, 695
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 894
BsuRI GGCC 2 cut(s) 401, 667
BsuTUI ATCGAT 1 cut(s) 894
BtsIMutI CAGTG 3 cut(s) 384, 918, 946
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 686
ClaI ATCGAT 1 cut(s) 894
Csp6I GTAC 3 cut(s) 185, 422, 504
CviAII CATG 2 cut(s) 384, 982
CviQI GTAC 3 cut(s) 185, 422, 504
DdeI CTNAG 4 cut(s) 12, 114, 910, 956
DpnI GATC 4 cut(s) 172, 318, 337, 752
DpnII GATC 4 cut(s) 170, 316, 335, 750
EaeI YGGCCR 2 cut(s) 399, 665
Eam1104I CTCTTC 1 cut(s) 862
EarI CTCTTC 1 cut(s) 862
Eco130I CCWWGG 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 2 cut(s) 387, 985
FatI CATG 2 cut(s) 383, 981
Fnu4HI GCNGC 5 cut(s) 225, 399, 681, 684, 687
Fsp4HI GCNGC 5 cut(s) 225, 399, 681, 684, 687
FspBI CTAG 4 cut(s) 21, 602, 701, 720
GluI GCNGC 5 cut(s) 225, 399, 681, 684, 687
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 2 cut(s) 401, 667
HapII CCGG 1 cut(s) 280
Hin1II CATG 2 cut(s) 387, 985
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 7 cut(s) 8, 58, 236, 475, 584, 621, 944
HpaI GTTAAC 1 cut(s) 717
HpaII CCGG 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 717
Hpy188I TCNGA 6 cut(s) 13, 115, 150, 436, 480, 949
Hpy188III TCNNGA 3 cut(s) 449, 588, 731
Hpy8I GTNNAC 1 cut(s) 717
HpyAV CCTTC 5 cut(s) 35, 145, 458, 921, 946
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 6 cut(s) 260, 286, 550, 680, 689, 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 686, 695, 733
HpyF3I CTNAG 4 cut(s) 12, 114, 910, 956
Hsp92II CATG 2 cut(s) 387, 985
KspAI GTTAAC 1 cut(s) 717
Kzo9I GATC 4 cut(s) 170, 316, 335, 750
LmnI GCTCC 2 cut(s) 487, 733
LpnPI CCDG 8 cut(s) 199, 293, 428, 594, 601, 716, 745, 794
Lsp1109I GCAGC 4 cut(s) 211, 673, 692, 695
MaeI CTAG 4 cut(s) 21, 602, 701, 720
MaeIII GTNAC 2 cut(s) 870, 941
MalI GATC 4 cut(s) 172, 318, 337, 752
MboI GATC 4 cut(s) 170, 316, 335, 750
MboII GAAGA 4 cut(s) 50, 92, 422, 849
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 920
MluCI AATT 6 cut(s) 83, 139, 269, 437, 813, 975
MlyI GAGTC 3 cut(s) 2, 615, 938
MnlI CCTC 2 cut(s) 115, 965
MseI TTAA 4 cut(s) 500, 653, 716, 738
MslI CAYNNNNRTG 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 686
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 763
MwoI GCNNNNNNNGC 4 cut(s) 30, 686, 695, 733
NdeII GATC 4 cut(s) 170, 316, 335, 750
NlaIII CATG 2 cut(s) 387, 985
NlaIV GGNNCC 1 cut(s) 172
NmeAIII GCCGAG 2 cut(s) 59, 643
NmuCI GTSAC 1 cut(s) 941
NspI RCATGY 2 cut(s) 387, 985
PctI GAATGC 1 cut(s) 763
PfeI GAWTC 4 cut(s) 58, 236, 475, 584
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 5 cut(s) 226, 400, 682, 685, 688
PleI GAGTC 3 cut(s) 2, 615, 938
PpsI GAGTC 3 cut(s) 2, 615, 938
PsiI TTATAA 2 cut(s) 564, 798
PspN4I GGNNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 3 cut(s) 186, 423, 505
RsaNI GTAC 3 cut(s) 185, 422, 504
RseI CAYNNNNRTG 1 cut(s) 511
SaqAI TTAA 4 cut(s) 500, 653, 716, 738
SatI GCNGC 5 cut(s) 225, 399, 681, 684, 687
Sau3AI GATC 4 cut(s) 170, 316, 335, 750
SchI GAGTC 3 cut(s) 2, 615, 938
SduI GDGCHC 1 cut(s) 920
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SpeI ACTAGT 2 cut(s) 601, 700
Sse9I AATT 6 cut(s) 83, 139, 269, 437, 813, 975
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 693
SspMI CTAG 4 cut(s) 21, 602, 701, 720
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 2 cut(s) 749, 894
TasI AATT 6 cut(s) 83, 139, 269, 437, 813, 975
TatI WGTACW 1 cut(s) 503
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 4 cut(s) 58, 236, 475, 584
Tru1I TTAA 4 cut(s) 500, 653, 716, 738
Tru9I TTAA 4 cut(s) 500, 653, 716, 738
TscAI CASTG 3 cut(s) 384, 918, 946
TseFI GTSAC 1 cut(s) 941
TseI GCWGC 4 cut(s) 224, 680, 683, 686
Tsp45I GTSAC 1 cut(s) 941
TspDTI ATGAA 3 cut(s) 71, 93, 792
TspRI CASTG 3 cut(s) 384, 918, 946
Van91I CCANNNNNTGG 1 cut(s) 213
Vha464I CTTAAG 1 cut(s) 737
XapI RAATTY 4 cut(s) 139, 269, 437, 975
XceI RCATGY 2 cut(s) 387, 985
XspI CTAG 4 cut(s) 21, 602, 701, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.