RchiOBHm_Chr2g0114891

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012018
Physical Location & Seq
Reverse (-)
26778561 .. 26780644
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48810

Sequence Viewer

Length: 756 bp
ATGGATTCCGGTAACAGCGGAAGTATGCAGTCCTCGAGTGGCGGCGACGACGAGTCGTACGACTCACGCGCGGAGTCGATCTCGGCCTTGCTGGGTCCCGCCATGACTAACCACCACCACCACCACCACCCACCGCAAGTACCGCAACAACAACAACAACACCACCGCCATCATCCTCATGTTGAGTTCGACACCTTATCCAACATCTTCGATTCGAGGCTCACAAACCCGAACCCGCTCCTCAACCTCGACATGGTGTGGTCCAAGACGCTGAGATCCGACCCGAGTATGTCCGATCTTGGCGGCCAGAACGAGCTCAGCCAATCCTTTTTGACCAATAGTCAACTAGGAGGACAAGTCAGCAGAACAGGAGTCGGCGGCGGCGGAGGAGGGTCATCTACTTTTACTCAGATCCCATCCTCGTCAGCTCCGAACGACCAGACCAACAACAACAACAACAACGTCGGCGGCGTTCGGAACAGCAACCCAAAAAAGAGGTCGAGAGCGTCGAGGCGTGCACCCACTACGGTTCTCACCACAGACACAACAAACTTCCGAGCCATGGTTCAAGAATTTACAGTCTCAGAGTCTTTTGAACATGAACAACATGCAAAACTCCTCCTCTTCATCAGTTCTGAATTTTCAGTCCCTCTTTCAAAACCAGCAGCCTCAGCCGAATTTACCAAAATACCCATTACCCGGTTCAGGCAATATTCTTGGCTCCTCCAAGTCTCAAGGCTCTTTGGGTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

251

Amino Acids

27.47

Weight (kDa)

6.9

Isoelectric Point (pI)

55.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 172 - 193 8.1e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65170 AT5G65170
fragaria_vesca FvH4_1g21110
malus_domestica MD01G1027700.v1.1 MD15G1325900.v1.1
prunus_persica Prupe.6G183200_v2.0.a1 Prupe.6G183200_v2.0.a1
pyrus_communis pycom01g05580 pycom15g28700
rosa_chinensis RchiOBHm_Chr2g0114891
rosa_laevigata RLG00000018131
rosa_multiflora Rmu_sc0002764.1_g000028
rosa_roxburghii Rroxscaffold_2G00130390
rosa_rugosa Rorug02G0191400
rosa_samantha Rh2AG250000 Rh2BG259600 Rh2CG254400 Rh2DG258200
rosa_wichuraiana Rw2G019500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 238
AccII CGCG 2 cut(s) 69, 71
AclWI GGATC 2 cut(s) 270, 406
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 3 cut(s) 572, 638, 677
AfaI GTAC 2 cut(s) 59, 141
AfiI CCNNNNNNNGG 4 cut(s) 253, 562, 699, 705
AgsI TTSAA 3 cut(s) 569, 596, 657
AhdI GACNNNNNGTC 2 cut(s) 52, 339
AluBI AGCT 2 cut(s) 316, 428
AluI AGCT 2 cut(s) 316, 428
Alw21I GWGCWC 2 cut(s) 318, 520
Alw26I GTCTC 2 cut(s) 586, 736
Alw44I GTGCAC 1 cut(s) 516
AlwI GGATC 2 cut(s) 270, 406
Ama87I CYCGRG 2 cut(s) 34, 283
AoxI GGCC 2 cut(s) 84, 304
ApaLI GTGCAC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 665
ApoI RAATTY 3 cut(s) 572, 638, 677
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 95, 261
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 2 cut(s) 34, 283
AvaII GGWCC 2 cut(s) 95, 261
BaeGI GKGCMC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 2 cut(s) 318, 520
BbvCI CCTCAGC 1 cut(s) 670
BbvI GCAGC 1 cut(s) 677
BccI CCATC 2 cut(s) 177, 424
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 586, 736
BfaI CTAG 1 cut(s) 347
BisI GCNGC 6 cut(s) 43, 304, 379, 382, 469, 666
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 6 cut(s) 44, 305, 380, 383, 470, 667
Bme1390I CCNGG 1 cut(s) 700
Bme18I GGWCC 2 cut(s) 95, 261
BmeRI GACNNNNNGTC 2 cut(s) 52, 339
BmeT110I CYCGRG 2 cut(s) 34, 283
BmgT120I GGNCC 2 cut(s) 95, 261
BmiI GGNNCC 3 cut(s) 96, 97, 722
BmrFI CCNGG 1 cut(s) 700
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 670
Bpu1102I GCTNAGC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 718
BpuMI CCSGG 1 cut(s) 700
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 562, 699, 705
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 2 cut(s) 172, 416
BseLI CCNNNNNNNGG 4 cut(s) 253, 562, 699, 705
BseMII CTCAG 5 cut(s) 263, 331, 422, 597, 684
BseRI GAGGAG 5 cut(s) 230, 402, 608, 611, 713
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 1 cut(s) 677
BseYI CCCAGC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 69, 71
BshFI GGCC 2 cut(s) 86, 306
BsiHKAI GWGCWC 2 cut(s) 318, 520
BsiHKCI CYCGRG 2 cut(s) 34, 283
BsiSI CCGG 2 cut(s) 9, 700
BsiWI CGTACG 1 cut(s) 57
BslFI GGGAC 2 cut(s) 81, 632
BslI CCNNNNNNNGG 4 cut(s) 253, 562, 699, 705
BsmAI GTCTC 2 cut(s) 586, 736
BsmFI GGGAC 2 cut(s) 81, 632
BsnI GGCC 2 cut(s) 86, 306
BsoBI CYCGRG 2 cut(s) 34, 283
Bsp1286I GDGCHC 2 cut(s) 318, 520
Bsp143I GATC 4 cut(s) 78, 275, 295, 411
Bsp1720I GCTNAGC 1 cut(s) 317
Bsp19I CCATGG 1 cut(s) 561
BspANI GGCC 2 cut(s) 86, 306
BspCNI CTCAG 5 cut(s) 264, 330, 421, 596, 683
BspFNI CGCG 2 cut(s) 69, 71
BspLI GGNNCC 3 cut(s) 96, 97, 722
BspPI GGATC 2 cut(s) 270, 406
BsrBI CCGCTC 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 4 cut(s) 78, 275, 295, 411
BssT1I CCWWGG 1 cut(s) 561
Bst4CI ACNGT 2 cut(s) 529, 580
Bst6I CTCTTC 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 5 cut(s) 272, 317, 408, 583, 670
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 2 cut(s) 172, 416
BstFNI CGCG 2 cut(s) 69, 71
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 4 cut(s) 81, 278, 298, 414
BstMAI GTCTC 2 cut(s) 586, 736
BstMBI GATC 4 cut(s) 78, 275, 295, 411
BstMWI GCNNNNNNNGC 2 cut(s) 142, 671
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 698
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 2 cut(s) 69, 71
BstV1I GCAGC 1 cut(s) 677
BstX2I RGATCY 2 cut(s) 275, 411
BstYI RGATCY 2 cut(s) 275, 411
BsuRI GGCC 2 cut(s) 86, 306
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 2 cut(s) 172, 416
Cac8I GCNNGC 1 cut(s) 516
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 95, 261
CseI GACGC 2 cut(s) 277, 495
Csp6I GTAC 2 cut(s) 58, 140
CviAII CATG 6 cut(s) 103, 179, 253, 562, 599, 608
CviQI GTAC 2 cut(s) 58, 140
DdeI CTNAG 5 cut(s) 272, 317, 408, 583, 670
DpnI GATC 4 cut(s) 80, 277, 297, 413
DpnII GATC 4 cut(s) 78, 275, 295, 411
DriI GACNNNNNGTC 2 cut(s) 52, 339
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 629
Eam1105I GACNNNNNGTC 2 cut(s) 52, 339
EarI CTCTTC 1 cut(s) 629
EciI GGCGGA 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 95, 261
Eco53kI GAGCTC 1 cut(s) 316
Eco88I CYCGRG 2 cut(s) 34, 283
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 6 cut(s) 106, 182, 256, 565, 602, 611
FaiI YATR 8 cut(s) 26, 104, 180, 254, 290, 563, 600, 609
FaqI GGGAC 2 cut(s) 81, 632
FatI CATG 6 cut(s) 102, 178, 252, 561, 598, 607
FauI CCCGC 2 cut(s) 106, 243
Fnu4HI GCNGC 6 cut(s) 43, 304, 379, 382, 469, 666
FokI GGATG 2 cut(s) 159, 403
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 6 cut(s) 43, 304, 379, 382, 469, 666
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 70
GluI GCNGC 6 cut(s) 43, 304, 379, 382, 469, 666
GsaI CCCAGC 1 cut(s) 95
HaeIII GGCC 2 cut(s) 86, 306
HapII CCGG 2 cut(s) 9, 700
HgaI GACGC 2 cut(s) 277, 495
HhaI GCGC 1 cut(s) 71
Hin1II CATG 6 cut(s) 106, 182, 256, 565, 602, 611
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 344
HindII GTYRAC 1 cut(s) 344
HinfI GANTC 7 cut(s) 5, 53, 62, 74, 212, 372, 587
HpaII CCGG 2 cut(s) 9, 700
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 2 cut(s) 344, 518
Hpy188I TCNGA 8 cut(s) 280, 295, 411, 432, 477, 557, 586, 637
Hpy188III TCNNGA 2 cut(s) 501, 569
Hpy8I GTNNAC 2 cut(s) 344, 518
Hpy99I CGWCG 4 cut(s) 50, 53, 467, 511
HpyCH4III ACNGT 2 cut(s) 529, 580
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 3 cut(s) 28, 518, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 671
HpyF3I CTNAG 5 cut(s) 272, 317, 408, 583, 670
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 6 cut(s) 106, 182, 256, 565, 602, 611
HspAI GCGC 1 cut(s) 69
KflI GGGWCCC 1 cut(s) 95
Kzo9I GATC 4 cut(s) 78, 275, 295, 411
LmnI GCTCC 3 cut(s) 243, 433, 726
LpnPI CCDG 8 cut(s) 22, 77, 320, 354, 452, 675, 691, 713
Lsp1109I GCAGC 1 cut(s) 677
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 11
MalI GATC 4 cut(s) 80, 277, 297, 413
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 78, 275, 295, 411
MboII GAAGA 2 cut(s) 199, 616
MflI RGATCY 2 cut(s) 275, 411
MhlI GDGCHC 2 cut(s) 318, 520
MluCI AATT 3 cut(s) 572, 638, 677
MlyI GAGTC 5 cut(s) 56, 62, 83, 381, 596
MmeI TCCRAC 2 cut(s) 225, 303
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 2 cut(s) 9, 700
MspR9I CCNGG 1 cut(s) 700
MvnI CGCG 2 cut(s) 69, 71
MwoI GCNNNNNNNGC 2 cut(s) 142, 671
NciI CCSGG 1 cut(s) 700
NcoI CCATGG 1 cut(s) 561
NdeII GATC 4 cut(s) 78, 275, 295, 411
NlaIII CATG 6 cut(s) 106, 182, 256, 565, 602, 611
NlaIV GGNNCC 3 cut(s) 96, 97, 722
NmeAIII GCCGAG 1 cut(s) 62
NspI RCATGY 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 34
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 428, 468, 506
PfeI GAWTC 2 cut(s) 5, 212
Pfl23II CGTACG 1 cut(s) 57
PkrI GCNGC 6 cut(s) 44, 305, 380, 383, 470, 667
PleI GAGTC 5 cut(s) 56, 61, 82, 380, 595
PpsI GAGTC 5 cut(s) 56, 61, 82, 380, 595
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 91
PspLI CGTACG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 96, 97, 722
PspPI GGNCC 2 cut(s) 95, 261
PspPPI RGGWCCY 1 cut(s) 95
PspXI VCTCGAGB 1 cut(s) 34
PsuI RGATCY 2 cut(s) 275, 411
RsaI GTAC 2 cut(s) 59, 141
RsaNI GTAC 2 cut(s) 58, 140
RseI CAYNNNNRTG 1 cut(s) 177
SacI GAGCTC 1 cut(s) 318
SatI GCNGC 6 cut(s) 43, 304, 379, 382, 469, 666
Sau3AI GATC 4 cut(s) 78, 275, 295, 411
Sau96I GGNCC 2 cut(s) 95, 261
SchI GAGTC 5 cut(s) 56, 62, 83, 381, 596
ScrFI CCNGG 1 cut(s) 700
SduI GDGCHC 2 cut(s) 318, 520
SetI ASST 6 cut(s) 197, 249, 318, 430, 465, 500
Sfr274I CTCGAG 1 cut(s) 34
SinI GGWCC 2 cut(s) 95, 261
SlaI CTCGAG 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 34, 733
SmoI CTYRAG 2 cut(s) 34, 733
Sse9I AATT 3 cut(s) 572, 638, 677
SspI AATATT 1 cut(s) 713
SspMI CTAG 1 cut(s) 347
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 698
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 2 cut(s) 529, 580
TaiI ACGT 1 cut(s) 465
TaqI TCGA 8 cut(s) 35, 77, 189, 210, 215, 249, 500, 509
TasI AATT 3 cut(s) 572, 638, 677
TauI GCSGC 5 cut(s) 45, 306, 381, 384, 471
TfiI GAWTC 2 cut(s) 5, 212
TseI GCWGC 1 cut(s) 665
TspDTI ATGAA 2 cut(s) 615, 616
VneI GTGCAC 1 cut(s) 516
VpaK11BI GGWCC 2 cut(s) 95, 261
XapI RAATTY 3 cut(s) 572, 638, 677
XceI RCATGY 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 34
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.