pycom15g28700

VQ motif

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
24821610 .. 24822974
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g28700.1

Sequence Viewer

Length: 1365 bp
ATGGATTCTGGTAATAGTGGGAGTTTGCAATCCTCCAGCGGCGGCGATGACGAGTACGACTCGCGCGCCGAGTCAATCTCCGCCTTGCTCAGTAACCCACCGAGTCAACTCGGTCCCATGTCTAACCCACCACCACATCACCCCCACCACCACATGGACCCTTTGTCAAACATGTTCGATCCGTTATCATCCAGGCTCACCAACCCAAACCCACTCCTCAATTTCGACATGATGTGGTCCAAAACCCTAAGATCTGACCCCAATCCCATCGATCTCGGCGGCCTCAGCCAACCCTTTTTGACCAATCCCAGTATCAACCAATTAGGACAAAACAGAGGCGGCGCCGCCGCCGGCGGAGGAGGAGGCGGGTCGTCTACATTTGCGGCGCTTCAGATCCCACATGATCATCAAAACATTTCGGCCTCTTCTTCGGCTCCCGACAACCAAACCCACAACAACAACATGAATAACAACGGCGTCGTTCGGAATCCGAAGAAGAGGTCGAGAGCGTCGAGGCGAGCACCGACGACGGTCCTGACAACAGACACCACAAATTTCAGAGCCATGGTTCAGGAATTTACAGGTATCCCTGCTCCTCCATTTTCTTCTTCCTCGCCTTTCCCGAGGAGCAGATTGGACCTTTTTGGCAGTGCTGCGGCTGCCTCTTCATTGATGAGATCAGCAGGAGGGGGAGGAGGAGGAGGAGGTGGTGGTTTGGGTTTGGACGCTCCTCCTTCATACCTTTTGAGGCCTTTTGCTCAAAAAGTGACACACCAACCGCCATCTTCATTGCTTGATCCCGTTAGTTCAACCTCCACAAATCACAATCTCCTCAATCTGCACAACCAAAACCCTTCATCATCATCTTCTTCACAAGTTCTCAATTTCCAATCCCTTTTTCAATCCCAGCAACAAAATCCTAAATACCCATTAATTTCCATTAATTCACCACCTCATCATCATCAAGCAGGCTCTTTGGGGGGCCCTCATCATCAACATTTTGGCTTGACTCAACAGCAGCAGCAACAGCTTAATGTTAATGCGCTTTCCAACAACAATATCGTATCCTCCTCGGACGCCGCGCTTTCCAGGCACGACATTAGTAATGGTCCAAGTTGGGGTACTGGCGGAACTGGGTCCAACAAGAACATCGACAACAACAATGTGGTTGATCATCAAAGACTAATGAGTTCTATCAATGGAAATTACGGCAATGGGAAACTCAACTACTCGGCTACTGGTTCTTCGTCGAATATTGTGCTTCATGGCGGTAATGTGCCTCCAACAACAATTGCCGCTGCTACTACTACTACCGCCACTCGAAGCGAAGGTATGGTGGAATCATGGATTTGCTCCTCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

47.59

Weight (kDa)

7.06

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 173 - 200 1.2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012018)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 154
AccI GTMKAC 1 cut(s) 374
AccII CGCG 3 cut(s) 64, 66, 1082
AclWI GGATC 3 cut(s) 173, 388, 791
AcsI RAATTY 2 cut(s) 553, 575
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 3 cut(s) 342, 477, 1077
AfaI GTAC 2 cut(s) 56, 1123
AfiI CCNNNNNNNGG 2 cut(s) 154, 1118
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 810, 902
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 191, 1088
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AluBI AGCT 1 cut(s) 1030
AluI AGCT 1 cut(s) 1030
Alw21I GWGCWC 1 cut(s) 523
AlwI GGATC 3 cut(s) 173, 388, 791
Ama87I CYCGRG 1 cut(s) 622
AoxI GGCC 4 cut(s) 280, 420, 749, 982
ApaI GGGCCC 1 cut(s) 986
ApeKI GCWGC 5 cut(s) 653, 659, 1018, 1021, 1298
ApoI RAATTY 2 cut(s) 553, 575
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AseI ATTAAT 2 cut(s) 932, 942
AspLEI GCGC 6 cut(s) 66, 68, 344, 388, 1045, 1084
AspS9I GGNCC 9 cut(s) 113, 157, 237, 532, 637, 982, 983, 1109, 1137
AsuHPI GGTGA 3 cut(s) 131, 190, 939
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 7 cut(s) 113, 157, 237, 532, 637, 1109, 1137
BaeGI GKGCMC 1 cut(s) 986
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 986
Bbv12I GWGCWC 1 cut(s) 523
BbvCI CCTCAGC 1 cut(s) 284
BbvI GCAGC 5 cut(s) 640, 646, 1030, 1033, 1285
BccI CCATC 2 cut(s) 275, 790
BceAI ACGGC 2 cut(s) 490, 1225
BcgI CGANNNNNNTGC 2 cut(s) 1240, 1274
BciT130I CCWGG 2 cut(s) 193, 1090
BciVI GTATCC 2 cut(s) 596, 1075
BclI TGATCA 2 cut(s) 403, 1171
BfoI RGCGCY 2 cut(s) 345, 389
BfuI GTATCC 2 cut(s) 596, 1075
BglII AGATCT 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 193, 1090
Bme18I GGWCC 7 cut(s) 113, 157, 237, 532, 637, 1109, 1137
BmeRI GACNNNNNGTC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 9 cut(s) 113, 157, 237, 532, 637, 982, 983, 1109, 1137
BmiI GGNNCC 7 cut(s) 115, 159, 343, 435, 983, 984, 1138
BmrFI CCNGG 2 cut(s) 193, 1090
BmrI ACTGGG 2 cut(s) 303, 1143
BmuI ACTGGG 2 cut(s) 303, 1143
BoxI GACNNNNGTC 1 cut(s) 530
BplI GAGNNNNNCTC 4 cut(s) 44, 76, 62, 94
BpmI CTGGAG 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 284
Bsa29I ATCGAT 1 cut(s) 270
BsaHI GRCGYC 3 cut(s) 342, 477, 1077
BsaJI CCNNGG 3 cut(s) 564, 623, 1071
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 1118
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 4 cut(s) 309, 1129, 1138, 1243
Bse3DI GCAATG 2 cut(s) 788, 1219
BseBI CCWGG 2 cut(s) 193, 1090
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 564, 623, 1071
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 154, 1118
BseMI GCAATG 2 cut(s) 788, 1219
BseMII CTCAG 2 cut(s) 103, 298
BseNI ACTGG 4 cut(s) 309, 1129, 1138, 1243
BsePI GCGCGC 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 986
BseXI GCAGC 5 cut(s) 640, 646, 1030, 1033, 1285
BseYI CCCAGC 1 cut(s) 906
BsgI GTGCAG 1 cut(s) 824
Bsh1236I CGCG 3 cut(s) 64, 66, 1082
BshFI GGCC 4 cut(s) 282, 422, 751, 984
BshNI GGYRCC 1 cut(s) 341
BshVI ATCGAT 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 622
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 154, 1118
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 4 cut(s) 282, 422, 751, 984
BsoBI CYCGRG 1 cut(s) 622
Bsp120I GGGCCC 1 cut(s) 982
Bsp1286I GDGCHC 2 cut(s) 523, 986
Bsp143I GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
Bsp19I CCATGG 1 cut(s) 564
BspANI GGCC 4 cut(s) 282, 422, 751, 984
BspCNI CTCAG 2 cut(s) 102, 297
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 3 cut(s) 64, 66, 1082
BspLI GGNNCC 7 cut(s) 115, 159, 343, 435, 983, 984, 1138
BspPI GGATC 3 cut(s) 173, 388, 791
BspT107I GGYRCC 1 cut(s) 341
BsrDI GCAATG 2 cut(s) 788, 1219
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 4 cut(s) 309, 1129, 1138, 1243
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 3 cut(s) 564, 623, 1071
BssHII GCGCGC 1 cut(s) 64
BssMI GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
BssNI GRCGYC 3 cut(s) 342, 477, 1077
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 2 cut(s) 193, 1090
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 3 cut(s) 430, 491, 670
BstACI GRCGYC 3 cut(s) 342, 477, 1077
BstC8I GCNNGC 4 cut(s) 66, 352, 519, 970
BstDEI CTNAG 4 cut(s) 89, 248, 284, 1357
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 188
BstFNI CGCG 3 cut(s) 64, 66, 1082
BstH2I RGCGCY 2 cut(s) 345, 389
BstHHI GCGC 6 cut(s) 66, 68, 344, 388, 1045, 1084
BstKTI GATC 8 cut(s) 181, 254, 274, 396, 406, 680, 799, 1174
BstMBI GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
BstMWI GCNNNNNNNGC 4 cut(s) 285, 659, 1027, 1090
BstNI CCWGG 2 cut(s) 193, 1090
BstNSI RCATGY 1 cut(s) 175
BstPAI GACNNNNGTC 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 191, 1088
BstSLI GKGCMC 1 cut(s) 986
BstUI CGCG 3 cut(s) 64, 66, 1082
BstV1I GCAGC 5 cut(s) 640, 646, 1030, 1033, 1285
BstX2I RGATCY 2 cut(s) 251, 393
BstYI RGATCY 2 cut(s) 251, 393
Bsu15I ATCGAT 1 cut(s) 270
BsuI GTATCC 2 cut(s) 596, 1075
BsuRI GGCC 4 cut(s) 282, 422, 751, 984
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 564
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 655
Cac8I GCNNGC 4 cut(s) 66, 352, 519, 970
CfoI GCGC 6 cut(s) 66, 68, 344, 388, 1045, 1084
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 9 cut(s) 113, 157, 237, 532, 637, 982, 983, 1109, 1137
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 4 cut(s) 466, 498, 734, 1085
Csp6I GTAC 2 cut(s) 55, 1122
CviAII CATG 9 cut(s) 118, 154, 172, 229, 401, 463, 565, 1265, 1344
CviQI GTAC 2 cut(s) 55, 1122
DdeI CTNAG 4 cut(s) 89, 248, 284, 1357
DinI GGCGCC 1 cut(s) 343
DpnI GATC 8 cut(s) 180, 253, 273, 395, 405, 679, 798, 1173
DpnII GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
DriI GACNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 430, 491, 670
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 3 cut(s) 430, 491, 670
EciI GGCGGA 3 cut(s) 70, 369, 1143
Eco130I CCWWGG 1 cut(s) 564
Eco147I AGGCCT 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 986
Eco47I GGWCC 7 cut(s) 113, 157, 237, 532, 637, 1109, 1137
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 622
EcoO109I RGGNCCY 2 cut(s) 982, 983
EcoRII CCWGG 2 cut(s) 191, 1088
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 986
EgeI GGCGCC 1 cut(s) 343
EheI GGCGCC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 9 cut(s) 121, 157, 175, 232, 404, 466, 568, 1268, 1347
FaqI GGGAC 1 cut(s) 99
FatI CATG 9 cut(s) 117, 153, 171, 228, 400, 462, 564, 1264, 1343
FauI CCCGC 1 cut(s) 359
FbaI TGATCA 2 cut(s) 403, 1171
FblI GTMKAC 1 cut(s) 374
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 986
GlaI GCGC 6 cut(s) 65, 67, 343, 387, 1044, 1083
GsaI CCCAGC 1 cut(s) 910
GsuI CTGGAG 1 cut(s) 19
HaeII RGCGCY 2 cut(s) 345, 389
HaeIII GGCC 4 cut(s) 282, 422, 751, 984
HapII CCGG 1 cut(s) 351
HgaI GACGC 4 cut(s) 466, 498, 734, 1085
HhaI GCGC 6 cut(s) 66, 68, 344, 388, 1045, 1084
Hin1I GRCGYC 3 cut(s) 342, 477, 1077
Hin1II CATG 9 cut(s) 121, 157, 175, 232, 404, 466, 568, 1268, 1347
Hin6I GCGC 6 cut(s) 64, 66, 342, 386, 1043, 1082
HinP1I GCGC 6 cut(s) 64, 66, 342, 386, 1043, 1082
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 7 cut(s) 5, 59, 71, 103, 487, 1009, 1340
HpaII CCGG 1 cut(s) 351
HphI GGTGA 3 cut(s) 131, 190, 939
Hpy166II GTNNAC 2 cut(s) 107, 375
Hpy188I TCNGA 7 cut(s) 256, 393, 486, 492, 560, 1075, 1360
Hpy188III TCNNGA 5 cut(s) 437, 504, 535, 572, 622
Hpy8I GTNNAC 2 cut(s) 107, 375
Hpy99I CGWCG 5 cut(s) 482, 514, 529, 532, 1252
HpyAV CCTTC 3 cut(s) 744, 864, 1322
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4V TGCA 2 cut(s) 28, 841
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 659, 1027, 1090
HpyF3I CTNAG 4 cut(s) 89, 248, 284, 1357
Hsp92I GRCGYC 3 cut(s) 342, 477, 1077
Hsp92II CATG 9 cut(s) 121, 157, 175, 232, 404, 466, 568, 1268, 1347
HspAI GCGC 6 cut(s) 64, 66, 342, 386, 1043, 1082
KasI GGCGCC 1 cut(s) 341
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Ksp22I TGATCA 2 cut(s) 403, 1171
Kzo9I GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
LmnI GCTCC 5 cut(s) 439, 598, 627, 733, 1358
Lsp1109I GCAGC 5 cut(s) 640, 646, 1030, 1033, 1285
MaeIII GTNAC 2 cut(s) 92, 766
MalI GATC 8 cut(s) 180, 253, 273, 395, 405, 679, 798, 1173
MboI GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
MfeI CAATTG 1 cut(s) 1290
MflI RGATCY 2 cut(s) 251, 393
MhlI GDGCHC 2 cut(s) 523, 986
MluCI AATT 9 cut(s) 220, 320, 553, 575, 883, 933, 943, 1204, 1290
Mly113I GGCGCC 1 cut(s) 342
MlyI GAGTC 4 cut(s) 53, 80, 112, 1003
MmeI TCCRAC 3 cut(s) 1074, 1164, 1307
MreI CGCCGGCG 1 cut(s) 350
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 4 cut(s) 932, 942, 1032, 1038
MspA1I CMGCKG 2 cut(s) 39, 1298
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 193, 1090
MunI CAATTG 1 cut(s) 1290
MvaI CCWGG 2 cut(s) 193, 1090
MvnI CGCG 3 cut(s) 64, 66, 1082
MwoI GCNNNNNNNGC 4 cut(s) 285, 659, 1027, 1090
NaeI GCCGGC 1 cut(s) 352
NarI GGCGCC 1 cut(s) 342
NcoI CCATGG 1 cut(s) 564
NdeII GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 9 cut(s) 121, 157, 175, 232, 404, 466, 568, 1268, 1347
NlaIV GGNNCC 7 cut(s) 115, 159, 343, 435, 983, 984, 1138
NmeAIII GCCGAG 3 cut(s) 94, 255, 1211
NmuCI GTSAC 1 cut(s) 766
NspI RCATGY 1 cut(s) 175
PauI GCGCGC 1 cut(s) 64
PceI AGGCCT 1 cut(s) 751
PciI ACATGT 1 cut(s) 171
PcsI WCGNNNNNNNCGW 2 cut(s) 509, 620
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 3 cut(s) 5, 487, 1340
PflMI CCANNNNNTGG 1 cut(s) 154
PleI GAGTC 4 cut(s) 53, 79, 111, 1003
PluTI GGCGCC 1 cut(s) 345
PpsI GAGTC 4 cut(s) 53, 79, 111, 1003
PscI ACATGT 1 cut(s) 171
PshAI GACNNNNGTC 1 cut(s) 530
PshBI ATTAAT 2 cut(s) 932, 942
Psp6I CCWGG 2 cut(s) 191, 1088
PspFI CCCAGC 1 cut(s) 906
PspGI CCWGG 2 cut(s) 191, 1088
PspN4I GGNNCC 7 cut(s) 115, 159, 343, 435, 983, 984, 1138
PspOMI GGGCCC 1 cut(s) 982
PspPI GGNCC 9 cut(s) 113, 157, 237, 532, 637, 982, 983, 1109, 1137
PsuI RGATCY 2 cut(s) 251, 393
PteI GCGCGC 1 cut(s) 64
RsaI GTAC 2 cut(s) 56, 1123
RsaNI GTAC 2 cut(s) 55, 1122
SaqAI TTAA 4 cut(s) 932, 942, 1032, 1038
Sau3AI GATC 8 cut(s) 178, 251, 271, 393, 403, 677, 796, 1171
Sau96I GGNCC 9 cut(s) 113, 157, 237, 532, 637, 982, 983, 1109, 1137
SchI GAGTC 4 cut(s) 53, 80, 112, 1003
ScrFI CCNGG 2 cut(s) 193, 1090
SduI GDGCHC 2 cut(s) 523, 986
SetI ASST 9 cut(s) 503, 586, 642, 709, 744, 815, 955, 1032, 1333
SfoI GGCGCC 1 cut(s) 343
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 7 cut(s) 113, 157, 237, 532, 637, 1109, 1137
Sse9I AATT 9 cut(s) 220, 320, 553, 575, 883, 933, 943, 1204, 1290
SseBI AGGCCT 1 cut(s) 751
SspDI GGCGCC 1 cut(s) 341
SspI AATATT 1 cut(s) 1255
StuI AGGCCT 1 cut(s) 751
StyD4I CCNGG 2 cut(s) 191, 1088
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 532
TaqI TCGA 8 cut(s) 177, 225, 270, 503, 512, 1152, 1250, 1321
TaqII GACCGA 1 cut(s) 101
TasI AATT 9 cut(s) 220, 320, 553, 575, 883, 933, 943, 1204, 1290
TfiI GAWTC 3 cut(s) 5, 487, 1340
Tru1I TTAA 4 cut(s) 932, 942, 1032, 1038
Tru9I TTAA 4 cut(s) 932, 942, 1032, 1038
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 5 cut(s) 653, 659, 1018, 1021, 1298
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 6 cut(s) 479, 657, 726, 777, 846, 1253
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 7 cut(s) 113, 157, 237, 532, 637, 1109, 1137
VspI ATTAAT 2 cut(s) 932, 942
XapI RAATTY 2 cut(s) 553, 575
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.