Prupe.6G183200_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012018
Physical Location & Seq
Forward (+)
19037459 .. 19040864
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G183200.2

Sequence Viewer

Length: 1422 bp
ATGGATTCTGGTAGTGGAAGTATGCAGTCCTCCAGCGGCGGCGATGACGAGTACGACTCGCGGGCCGAGTCAATCTCCGCTCTACTGAGTAACCCACCGAGTCAACTCGGCCACATGTCTAGCCACGCACCGCCACACCACCACCACCACCACCACCACCAACAAACCCATCACCACCTAGACCCTCTATCAAACATGTTCGATCCATTATCCTCCAGGCTCACGAACCCGAACCCGCTTCTCAATTTCGACATGGCGTGGTCCAAAACCCTAAGATCCGACCCGAATCCCACCGATCTCGGTGGCCTAAGCCAACCCTTTTTGACCAACCCCAATATTAATCAATTAGGACAAAGCAGAGGCGGCGGCGGCGGCGGAGGCGGCTCGTCTACTTTTGCGGCTCTTCAGATCCCGCATGATCACCAAAACGTTTCGGCTTCTTCTTCGGCTCCAAACAACCAAACCCACAACATCAACAGTAACAGCAACAACAACAACAGCAACAGCAACGGAGTCGTTCGGAACCCGAAGAAGAGGTCGAGAGCGTCGAGGCGCGCACCGACGACTGTGCTGACAACAGACACCACAAATTTCAGAGCCATGGTTCAGGAATTTACAGGTATCCCTGCTCCTCCATTTACATCCTCCTCGCCTTTCCCGAGAAGCAGACTGGATCTCTTTAGCTCAGCTGCTGCCGCCTCTGCCCTCATGAGATCAGCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGTTTGGGTTTGGAGCCTTCACCTCCTTCTTACCTTTTGAGGCCTTTTGCTCACAAAGTCTCTCACCAACCACCATCTTCTTCTTCCATTCTTGATCATCCAAACTTACCCTCAACTAATTCAAGTGCCACTAACCACCACAATAATCTCCTCAATATGCAGCAAAACCCATCACCCTCCTCCTCCGCAGTTCTTAATTTCCAGTCCCTCTTTCAACCCCAACATCAGCAGCAGCAGCCTAAATACTCACTGCCCATTAATTCTCCGAATGATCTCCTTGCCTCCAAGACACCTCACCACCACCATCACCAAGGCTCTTTGGACCATTTTGGCTTGACCCAGCAGCAGCTCAATGTGCTTCCCAACAACATCGTATCCTCCTCGGATGCCGCGCTCTCGAGGCACGACAGTAATTCCAACTGGGGTAACGGAACAGGGCCCAGCAACAACAACAAGACCAACATTGACAACAACAATGTTGATCATCAAGGTCTGATGAGATCCATCAATGGGAATTACGGCAACGGGAAGCTAAACTACTCTGCTGGTTCTTCGTCCAATAATATTATCCATGGCGATAAGGCGCAGGATCAGAATGTGGCTGCCGCTGCTGCTAGAAGTGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAAAATCTACCAAATGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

474

Amino Acids

50.52

Weight (kDa)

6.77

Isoelectric Point (pI)

67.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65170 AT5G65170
fragaria_vesca FvH4_1g21110
malus_domestica MD01G1027700.v1.1 MD15G1325900.v1.1
prunus_persica Prupe.6G183200_v2.0.a1 Prupe.6G183200_v2.0.a1
pyrus_communis pycom01g05580 pycom15g28700
rosa_chinensis RchiOBHm_Chr2g0114891
rosa_laevigata RLG00000018131
rosa_multiflora Rmu_sc0002764.1_g000028
rosa_roxburghii Rroxscaffold_2G00130390
rosa_rugosa Rorug02G0191400
rosa_samantha Rh2AG250000 Rh2BG259600 Rh2CG254400 Rh2DG258200
rosa_wichuraiana Rw2G019500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 389
AccII CGCG 3 cut(s) 61, 555, 1142
AclI AACGTT 1 cut(s) 429
AclWI GGATC 6 cut(s) 197, 270, 403, 681, 1245, 1347
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 2 cut(s) 589, 611
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 1260
AflIII ACRYGT 2 cut(s) 114, 195
AgsI TTSAA 2 cut(s) 873, 965
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 5 cut(s) 684, 689, 719, 1099, 1282
AluI AGCT 5 cut(s) 684, 689, 719, 1099, 1282
Alw26I GTCTC 1 cut(s) 814
AlwI GGATC 6 cut(s) 197, 270, 403, 681, 1245, 1347
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 2 cut(s) 658, 1147
AoxI GGCC 5 cut(s) 63, 109, 304, 791, 1187
ApaI GGGCCC 1 cut(s) 1191
ApoI RAATTY 2 cut(s) 589, 611
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AseI ATTAAT 2 cut(s) 339, 1008
AspLEI GCGC 4 cut(s) 555, 557, 1144, 1336
AspS9I GGNCC 5 cut(s) 63, 261, 1072, 1187, 1188
AsuHPI GGTGA 7 cut(s) 164, 413, 762, 806, 915, 1037, 1049
AvaI CYCGRG 2 cut(s) 658, 1147
AvaII GGWCC 2 cut(s) 261, 1072
BaeGI GKGCMC 1 cut(s) 1191
BanII GRGCYC 1 cut(s) 1191
BarI GAAGNNNNNNTAC 2 cut(s) 1271, 1303
BccI CCATC 5 cut(s) 177, 832, 928, 1062, 1262
BceAI ACGGC 1 cut(s) 1285
BcgI CGANNNNNNTGC 4 cut(s) 496, 530, 550, 584
BciT130I CCWGG 1 cut(s) 217
BciVI GTATCC 2 cut(s) 632, 1135
BclI TGATCA 3 cut(s) 418, 844, 1231
BcoDI GTCTC 1 cut(s) 814
BfaI CTAG 3 cut(s) 120, 179, 1365
BfuI GTATCC 2 cut(s) 632, 1135
BlpI GCTNAGC 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 2 cut(s) 261, 1072
BmeT110I CYCGRG 2 cut(s) 658, 1147
BmgT120I GGNCC 5 cut(s) 63, 261, 1072, 1187, 1188
BmiI GGNNCC 4 cut(s) 450, 524, 765, 1189
BmrFI CCNGG 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 1180
BmsI GCATC 1 cut(s) 1126
BmuI ACTGGG 1 cut(s) 1180
BplI GAGNNNNNCTC 4 cut(s) 41, 73, 59, 91
BpmI CTGGAG 3 cut(s) 16, 199, 741
Bpu10I CCTNAGC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 685
BsaJI CCNNGG 4 cut(s) 600, 1060, 1131, 1321
Bsc4I CCNNNNNNNGG 1 cut(s) 1260
Bse1I ACTGG 3 cut(s) 675, 952, 1175
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 4 cut(s) 600, 1060, 1131, 1321
BseGI GGATG 3 cut(s) 641, 847, 1141
BseLI CCNNNNNNNGG 1 cut(s) 1260
BseMII CTCAG 2 cut(s) 77, 699
BseNI ACTGG 3 cut(s) 675, 952, 1175
BsePI GCGCGC 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 1191
BseYI CCCAGC 2 cut(s) 1089, 1190
Bsh1236I CGCG 3 cut(s) 61, 555, 1142
BshFI GGCC 5 cut(s) 65, 111, 306, 793, 1189
BsiHKCI CYCGRG 2 cut(s) 658, 1147
BslFI GGGAC 1 cut(s) 940
BslI CCNNNNNNNGG 1 cut(s) 1260
BsmAI GTCTC 1 cut(s) 814
BsmFI GGGAC 1 cut(s) 940
BsnI GGCC 5 cut(s) 65, 111, 306, 793, 1189
BsoBI CYCGRG 2 cut(s) 658, 1147
Bsp120I GGGCCC 1 cut(s) 1187
Bsp1286I GDGCHC 1 cut(s) 1191
Bsp1720I GCTNAGC 1 cut(s) 685
Bsp19I CCATGG 2 cut(s) 600, 1321
BspANI GGCC 5 cut(s) 65, 111, 306, 793, 1189
BspCNI CTCAG 2 cut(s) 78, 698
BspFNI CGCG 3 cut(s) 61, 555, 1142
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 4 cut(s) 450, 524, 765, 1189
BspPI GGATC 6 cut(s) 197, 270, 403, 681, 1245, 1347
BspQI GCTCTTC 1 cut(s) 408
BsrBI CCGCTC 1 cut(s) 80
BsrI ACTGG 3 cut(s) 675, 952, 1175
BssECI CCNNGG 4 cut(s) 600, 1060, 1131, 1321
BssHII GCGCGC 1 cut(s) 553
BssT1I CCWWGG 3 cut(s) 600, 1060, 1321
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 3 cut(s) 479, 568, 1160
Bst6I CTCTTC 2 cut(s) 408, 527
BstC8I GCNNGC 2 cut(s) 63, 555
BstDEI CTNAG 4 cut(s) 86, 272, 308, 685
BstDSI CCRYGG 2 cut(s) 600, 1321
BstF5I GGATG 3 cut(s) 641, 847, 1141
BstFNI CGCG 3 cut(s) 61, 555, 1142
BstHHI GCGC 4 cut(s) 555, 557, 1144, 1336
BstMAI GTCTC 1 cut(s) 814
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 118, 199
BstSCI CCNGG 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 1191
BstUI CGCG 3 cut(s) 61, 555, 1142
BstX2I RGATCY 4 cut(s) 275, 408, 673, 1250
BstYI RGATCY 4 cut(s) 275, 408, 673, 1250
BsuI GTATCC 2 cut(s) 632, 1135
BsuRI GGCC 5 cut(s) 65, 111, 306, 793, 1189
BtgI CCRYGG 2 cut(s) 600, 1321
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 3 cut(s) 641, 847, 1141
BtsI GCAGTG 1 cut(s) 998
BtsIMutI CAGTG 1 cut(s) 998
Cac8I GCNNGC 2 cut(s) 63, 555
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 708
CfoI GCGC 4 cut(s) 555, 557, 1144, 1336
Cfr13I GGNCC 5 cut(s) 63, 261, 1072, 1187, 1188
CseI GACGC 1 cut(s) 534
Csp6I GTAC 1 cut(s) 52
CviAII CATG 7 cut(s) 115, 196, 253, 416, 601, 709, 1322
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 4 cut(s) 86, 272, 308, 685
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 408, 527
EarI CTCTTC 2 cut(s) 408, 527
EciI GGCGGA 1 cut(s) 390
Eco130I CCWWGG 3 cut(s) 600, 1060, 1321
Eco147I AGGCCT 1 cut(s) 793
Eco24I GRGCYC 1 cut(s) 1191
Eco47I GGWCC 2 cut(s) 261, 1072
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 658, 1147
EcoO109I RGGNCCY 1 cut(s) 1187
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 3 cut(s) 600, 1060, 1321
EcoT38I GRGCYC 1 cut(s) 1191
ErhI CCWWGG 3 cut(s) 600, 1060, 1321
FaeI CATG 7 cut(s) 118, 199, 256, 419, 604, 712, 1325
FaiI YATR 9 cut(s) 23, 116, 197, 254, 417, 602, 710, 908, 1323
FaqI GGGAC 1 cut(s) 940
FatI CATG 7 cut(s) 114, 195, 252, 415, 600, 708, 1321
FauI CCCGC 3 cut(s) 54, 243, 420
FbaI TGATCA 3 cut(s) 418, 844, 1231
FblI GTMKAC 1 cut(s) 389
FokI GGATG 3 cut(s) 628, 834, 1148
FriOI GRGCYC 1 cut(s) 1191
FspBI CTAG 3 cut(s) 120, 179, 1365
GlaI GCGC 4 cut(s) 554, 556, 1143, 1335
GsaI CCCAGC 2 cut(s) 1093, 1194
GsuI CTGGAG 3 cut(s) 16, 199, 741
HaeIII GGCC 5 cut(s) 65, 111, 306, 793, 1189
HgaI GACGC 1 cut(s) 534
HhaI GCGC 4 cut(s) 555, 557, 1144, 1336
Hin1II CATG 7 cut(s) 118, 199, 256, 419, 604, 712, 1325
Hin6I GCGC 4 cut(s) 553, 555, 1142, 1334
HinP1I GCGC 4 cut(s) 553, 555, 1142, 1334
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 6 cut(s) 5, 56, 68, 100, 286, 513
HphI GGTGA 7 cut(s) 164, 413, 762, 806, 915, 1037, 1049
Hpy166II GTNNAC 2 cut(s) 104, 390
Hpy188I TCNGA 9 cut(s) 280, 408, 522, 596, 1017, 1135, 1245, 1344, 1421
Hpy188III TCNNGA 7 cut(s) 223, 540, 608, 658, 709, 842, 1147
Hpy8I GTNNAC 2 cut(s) 104, 390
Hpy99I CGWCG 2 cut(s) 550, 565
HpyAV CCTTC 2 cut(s) 777, 786
HpyCH4III ACNGT 3 cut(s) 479, 568, 1160
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 2 cut(s) 25, 910
HpyF3I CTNAG 4 cut(s) 86, 272, 308, 685
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 7 cut(s) 118, 199, 256, 419, 604, 712, 1325
HspAI GCGC 4 cut(s) 553, 555, 1142, 1334
Ksp22I TGATCA 3 cut(s) 418, 844, 1231
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 3 cut(s) 454, 634, 763
LweI GCATC 1 cut(s) 1126
MaeI CTAG 3 cut(s) 120, 179, 1365
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 3 cut(s) 89, 479, 1175
MbiI CCGCTC 1 cut(s) 80
MflI RGATCY 4 cut(s) 275, 408, 673, 1250
MhlI GDGCHC 1 cut(s) 1191
MluCI AATT 9 cut(s) 244, 344, 589, 611, 868, 946, 1009, 1162, 1264
MlyI GAGTC 4 cut(s) 50, 77, 109, 522
MmeI TCCRAC 2 cut(s) 303, 1191
MseI TTAA 3 cut(s) 339, 945, 1008
MspA1I CMGCKG 4 cut(s) 36, 689, 719, 1358
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 3 cut(s) 61, 555, 1142
NcoI CCATGG 2 cut(s) 600, 1321
NlaIII CATG 7 cut(s) 118, 199, 256, 419, 604, 712, 1325
NlaIV GGNNCC 4 cut(s) 450, 524, 765, 1189
NmeAIII GCCGAG 2 cut(s) 87, 91
NspI RCATGY 2 cut(s) 118, 199
PaeR7I CTCGAG 1 cut(s) 1147
PagI TCATGA 1 cut(s) 708
PauI GCGCGC 1 cut(s) 553
PceI AGGCCT 1 cut(s) 793
PciI ACATGT 2 cut(s) 114, 195
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 2 cut(s) 545, 656
PfeI GAWTC 2 cut(s) 5, 286
PleI GAGTC 4 cut(s) 50, 76, 108, 521
PpsI GAGTC 4 cut(s) 50, 76, 108, 521
PscI ACATGT 2 cut(s) 114, 195
PshBI ATTAAT 2 cut(s) 339, 1008
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 215
PspFI CCCAGC 2 cut(s) 1089, 1190
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 4 cut(s) 450, 524, 765, 1189
PspOMI GGGCCC 1 cut(s) 1187
PspPI GGNCC 5 cut(s) 63, 261, 1072, 1187, 1188
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 4 cut(s) 275, 408, 673, 1250
PteI GCGCGC 1 cut(s) 553
PvuII CAGCTG 2 cut(s) 689, 719
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 339, 945, 1008
Sau96I GGNCC 5 cut(s) 63, 261, 1072, 1187, 1188
SchI GAGTC 4 cut(s) 50, 77, 109, 522
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 1 cut(s) 1191
SfaNI GCATC 1 cut(s) 1126
Sfr274I CTCGAG 1 cut(s) 1147
SinI GGWCC 2 cut(s) 261, 1072
SlaI CTCGAG 1 cut(s) 1147
SmlI CTYRAG 1 cut(s) 1147
SmoI CTYRAG 1 cut(s) 1147
Sse9I AATT 9 cut(s) 244, 344, 589, 611, 868, 946, 1009, 1162, 1264
SseBI AGGCCT 1 cut(s) 793
SspI AATATT 2 cut(s) 337, 1315
SspMI CTAG 3 cut(s) 120, 179, 1365
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 3 cut(s) 600, 1060, 1321
TaaI ACNGT 3 cut(s) 479, 568, 1160
TaiI ACGT 1 cut(s) 432
TaqI TCGA 5 cut(s) 201, 249, 539, 548, 1148
TasI AATT 9 cut(s) 244, 344, 589, 611, 868, 946, 1009, 1162, 1264
TfiI GAWTC 2 cut(s) 5, 286
Tru1I TTAA 3 cut(s) 339, 945, 1008
Tru9I TTAA 3 cut(s) 339, 945, 1008
TscAI CASTG 1 cut(s) 1005
TspGWI ACGGA 2 cut(s) 525, 1194
TspRI CASTG 1 cut(s) 1005
VpaK11BI GGWCC 2 cut(s) 261, 1072
VspI ATTAAT 2 cut(s) 339, 1008
XapI RAATTY 2 cut(s) 589, 611
XceI RCATGY 2 cut(s) 118, 199
XhoI CTCGAG 1 cut(s) 1147
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 3 cut(s) 120, 179, 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.