pycom01g05580

VQ motif

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
5418951 .. 5420318
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05580.1

Sequence Viewer

Length: 1368 bp
ATGGATTCTGGCAACAGTGGGAGTATGCAATCCTCCAGCGGCGGCGATGACGAGTACGATTCGCGCGCTGAGTCAATCTCCGCCGTGCTCAGTAACCCACCGAGTCAACTCGGTCCCATGTCTAACCCACCACCACATCACCATCACCATCACCACCACCACCAAATGGACCCTCTATCAAACATGTTCGATCGGTTATCATCCAGGCTCACCAACCCAAATCCGCTCCTCAATTTCGACATGATGTGGTCCAAAACCTTAAGATCCGACCCCAATCCCACCGATCTAGCCGGTCTCAGCCAACCCATATTGACCAGTCCCTGTATCAACCAATTAGGACAAAGCAGAGGCGGCGCAGTCGCCGGCGGAGGAGGAGGCGGGTCGTCTACTTTTGCGGCGCTTCAGATTCCACAAGACATTCAAAACGTTTCTGCCTCTTTTTCGGCTCCCAACAACCAAACCCACAACAACAACAACAACGGTGTTGTGCGGAATCCGAAAAAGAGGTCGAGAGCGTCGAGGCGAGCACCAACGACGGTGCTGACAACGGACACCACAAATTTCAGAGCCATGGTTCAGGAATTTACAGGTATCCCTGCTCCTCCATTTTCTTCTTCCTCACCTTTCGCGAGGAGCAGATTGGACCTTTTTGGCAGTGCTGCTGCTGCCTCTTCATTGATGAGATCAGCAGGAGGCGGAGGAGGAGGAGGAGGGGGTCTAGGTTTGGACGCTACTCCTCCATACCTTTTGAGGCCTTTTGCGCAAAAAGTGACGCACCAACCACCATCTTCATTGCTTGATCCTATTAATTCATCCTCCACAAATCACAATCTCCTCAATGTGCAAAACCAAAACCCTTCATCATCATCATCTTCCTCACAAGTTCTCAATTTCCAATCCCTTTTTCAGTCCCAACAACAAAGTCCTAAATACCCATTAATGTCCGTTACTTCACCACCTCATCATCATCAAGCAGGCTCTTTGGGGGGTCCTCCTCATCAACATTTTGGTTTGACTCATCAGCAGCAGCAGCAGGTTAATGTTAATGCGCTTTCCAACAACATTGTATCTTCCTCGGACGCCGCGCTTTCCATGCACGACACTAGTAATGGTCCAAGCTGGGGTACTGACAGAACAGGGTCCAACAAGAACATTGACAACAGCGACAATATCGTTGATCATCAAAGACTAATGAGTTCTATCAATGGCAATTACGGCAATGGGAAACTCAACTACTCGGCTGCTGGTCCTTCGTCGAATATTGTACTTCATGCCGGCAATGTGCCTTCATCTACTGCTGCTGCTGCTACTACTACCACTCCTCGAAGCGAAGGTATGGTGGAATCATGGATTTGCTCCTCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

47.85

Weight (kDa)

7.08

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 175 - 202 1.2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012018)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 762
Acc36I ACCTGC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 166
AccBSI CCGCTC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 386
AccII CGCG 4 cut(s) 64, 66, 629, 1085
AclI AACGTT 1 cut(s) 426
AclWI GGATC 2 cut(s) 258, 794
AcsI RAATTY 2 cut(s) 559, 581
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 1080
AfaI GTAC 3 cut(s) 56, 1126, 1266
AfiI CCNNNNNNNGG 2 cut(s) 166, 1121
AflII CTTAAG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 1 cut(s) 422
AhlI ACTAGT 1 cut(s) 1103
AjnI CCWGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AluBI AGCT 1 cut(s) 1119
AluI AGCT 1 cut(s) 1119
Alw21I GWGCWC 2 cut(s) 90, 529
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 2 cut(s) 258, 794
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 1 cut(s) 752
ApoI RAATTY 2 cut(s) 559, 581
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AseI ATTAAT 2 cut(s) 807, 938
AspLEI GCGC 7 cut(s) 66, 68, 356, 400, 763, 1051, 1087
AspS9I GGNCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
AsuHPI GGTGA 6 cut(s) 131, 137, 143, 202, 612, 945
AvaII GGWCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
Bbv12I GWGCWC 2 cut(s) 90, 529
BccI CCATC 3 cut(s) 150, 156, 793
BceAI ACGGC 2 cut(s) 68, 1231
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 602
BclI TGATCA 1 cut(s) 1177
BcoDI GTCTC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 1103
BfaI CTAG 3 cut(s) 287, 719, 1104
BfoI RGCGCY 1 cut(s) 401
BfrI CTTAAG 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 1024
BfuI GTATCC 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
BmgT120I GGNCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
BmiI GGNNCC 5 cut(s) 115, 171, 447, 990, 1141
BmrFI CCNGG 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 1080
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 570, 1074
BsaXI ACNNNNNCTCC 2 cut(s) 1303, 1333
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 1121
Bse118I RCCGGY 3 cut(s) 290, 362, 1274
Bse1I ACTGG 1 cut(s) 315
Bse3DI GCAATG 3 cut(s) 791, 1225, 1285
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 570, 1074
BseGI GGATG 2 cut(s) 200, 812
BseLI CCNNNNNNNGG 2 cut(s) 166, 1121
BseMI GCAATG 3 cut(s) 791, 1225, 1285
BseMII CTCAG 3 cut(s) 60, 103, 310
BseNI ACTGG 1 cut(s) 315
BsePI GCGCGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 1119
Bsh1236I CGCG 4 cut(s) 64, 66, 629, 1085
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 754
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 90, 529
BsiSI CCGG 3 cut(s) 291, 363, 1275
BslFI GGGAC 3 cut(s) 99, 303, 895
BslI CCNNNNNNNGG 2 cut(s) 166, 1121
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 3 cut(s) 99, 303, 895
BsnI GGCC 1 cut(s) 754
Bso31I GGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 90, 529
Bsp143I GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
Bsp19I CCATGG 1 cut(s) 570
Bsp68I TCGCGA 1 cut(s) 629
BspANI GGCC 1 cut(s) 754
BspCNI CTCAG 3 cut(s) 61, 102, 309
BspFNI CGCG 4 cut(s) 64, 66, 629, 1085
BspLI GGNNCC 5 cut(s) 115, 171, 447, 990, 1141
BspMI ACCTGC 1 cut(s) 1024
BspPI GGATC 2 cut(s) 258, 794
BspTI CTTAAG 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 3 cut(s) 791, 1225, 1285
BsrFI RCCGGY 3 cut(s) 290, 362, 1274
BsrI ACTGG 1 cut(s) 315
BssAI RCCGGY 3 cut(s) 290, 362, 1274
BssECI CCNNGG 2 cut(s) 570, 1074
BssHII GCGCGC 1 cut(s) 64
BssMI GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
BssNI GRCGYC 1 cut(s) 1080
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 3 cut(s) 17, 482, 538
Bst6I CTCTTC 1 cut(s) 676
BstACI GRCGYC 1 cut(s) 1080
BstAFI CTTAAG 1 cut(s) 259
BstC8I GCNNGC 5 cut(s) 66, 364, 525, 976, 1276
BstDEI CTNAG 4 cut(s) 69, 89, 296, 1360
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 2 cut(s) 200, 812
BstFNI CGCG 4 cut(s) 64, 66, 629, 1085
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 7 cut(s) 66, 68, 356, 400, 763, 1051, 1087
BstKTI GATC 6 cut(s) 193, 266, 286, 686, 802, 1180
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 7 cut(s) 351, 665, 760, 1030, 1093, 1215, 1304
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 4 cut(s) 64, 66, 629, 1085
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuI GTATCC 1 cut(s) 602
BsuRI GGCC 1 cut(s) 754
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 200, 812
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 2 cut(s) 22, 661
BtuMI TCGCGA 1 cut(s) 629
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 5 cut(s) 66, 364, 525, 976, 1276
CaiI CAGNNNCTG 1 cut(s) 321
CfoI GCGC 7 cut(s) 66, 68, 356, 400, 763, 1051, 1087
Cfr10I RCCGGY 3 cut(s) 290, 362, 1274
Cfr13I GGNCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
CseI GACGC 4 cut(s) 504, 737, 781, 1088
Csp6I GTAC 3 cut(s) 55, 1125, 1265
CviAII CATG 7 cut(s) 118, 184, 241, 571, 1093, 1271, 1347
CviJI RGCY 9 cut(s) 208, 290, 300, 446, 569, 754, 978, 1119, 1241
CviKI_1 RGCY 9 cut(s) 208, 290, 300, 446, 569, 754, 978, 1119, 1241
CviQI GTAC 3 cut(s) 55, 1125, 1265
DdeI CTNAG 4 cut(s) 69, 89, 296, 1360
DpnI GATC 6 cut(s) 192, 265, 285, 685, 801, 1179
DpnII GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
Eam1104I CTCTTC 1 cut(s) 676
EarI CTCTTC 1 cut(s) 676
EciI GGCGGA 3 cut(s) 70, 381, 711
Eco130I CCWWGG 1 cut(s) 570
Eco147I AGGCCT 1 cut(s) 754
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
Eco57I CTGAAG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 989
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 7 cut(s) 121, 187, 244, 574, 1096, 1274, 1350
FaqI GGGAC 3 cut(s) 99, 303, 895
FatI CATG 7 cut(s) 117, 183, 240, 570, 1092, 1270, 1346
FauI CCCGC 1 cut(s) 371
FbaI TGATCA 1 cut(s) 1177
FblI GTMKAC 1 cut(s) 386
FokI GGATG 2 cut(s) 187, 799
FspBI CTAG 3 cut(s) 287, 719, 1104
FspI TGCGCA 1 cut(s) 762
GlaI GCGC 7 cut(s) 65, 67, 355, 399, 762, 1050, 1086
GsaI CCCAGC 1 cut(s) 1123
GsuI CTGGAG 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 1 cut(s) 754
HapII CCGG 3 cut(s) 291, 363, 1275
HgaI GACGC 4 cut(s) 504, 737, 781, 1088
HhaI GCGC 7 cut(s) 66, 68, 356, 400, 763, 1051, 1087
Hin1I GRCGYC 1 cut(s) 1080
Hin1II CATG 7 cut(s) 121, 187, 244, 574, 1096, 1274, 1350
Hin6I GCGC 7 cut(s) 64, 66, 354, 398, 761, 1049, 1085
HinP1I GCGC 7 cut(s) 64, 66, 354, 398, 761, 1049, 1085
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 8 cut(s) 5, 59, 71, 103, 406, 493, 1015, 1343
HpaII CCGG 3 cut(s) 291, 363, 1275
HphI GGTGA 6 cut(s) 131, 137, 143, 202, 612, 945
Hpy166II GTNNAC 2 cut(s) 107, 387
Hpy188I TCNGA 6 cut(s) 268, 405, 498, 566, 1078, 1363
Hpy188III TCNNGA 3 cut(s) 510, 578, 628
Hpy8I GTNNAC 2 cut(s) 107, 387
Hpy99I CGWCG 3 cut(s) 520, 538, 1258
HpyAV CCTTC 4 cut(s) 867, 1260, 1296, 1325
HpyCH4III ACNGT 3 cut(s) 17, 482, 538
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 28, 844, 1096
HpyF10VI GCNNNNNNNGC 7 cut(s) 351, 665, 760, 1030, 1093, 1215, 1304
HpyF3I CTNAG 4 cut(s) 69, 89, 296, 1360
HpySE526I ACGT 1 cut(s) 426
Hsp92I GRCGYC 1 cut(s) 1080
Hsp92II CATG 7 cut(s) 121, 187, 244, 574, 1096, 1274, 1350
HspAI GCGC 7 cut(s) 64, 66, 354, 398, 761, 1049, 1085
KroI GCCGGC 2 cut(s) 362, 1274
KroNI GCCGGC 2 cut(s) 364, 1276
Ksp22I TGATCA 1 cut(s) 1177
Kzo9I GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
LmnI GCTCC 5 cut(s) 231, 451, 604, 633, 1361
MaeI CTAG 3 cut(s) 287, 719, 1104
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 3 cut(s) 92, 769, 946
MalI GATC 6 cut(s) 192, 265, 285, 685, 801, 1179
MbiI CCGCTC 1 cut(s) 226
MboI GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
MboII GAAGA 6 cut(s) 603, 606, 663, 780, 864, 1062
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 2 cut(s) 90, 529
MluCI AATT 7 cut(s) 232, 332, 559, 581, 808, 889, 1210
MlyI GAGTC 3 cut(s) 80, 112, 1009
MmeI TCCRAC 3 cut(s) 291, 1080, 1167
MreI CGCCGGCG 1 cut(s) 362
MroNI GCCGGC 2 cut(s) 362, 1274
MseI TTAA 5 cut(s) 260, 807, 938, 1038, 1044
MspA1I CMGCKG 1 cut(s) 39
MspCI CTTAAG 1 cut(s) 259
MspI CCGG 3 cut(s) 291, 363, 1275
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 4 cut(s) 64, 66, 629, 1085
MwoI GCNNNNNNNGC 7 cut(s) 351, 665, 760, 1030, 1093, 1215, 1304
NaeI GCCGGC 2 cut(s) 364, 1276
NcoI CCATGG 1 cut(s) 570
NdeII GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
NgoMIV GCCGGC 2 cut(s) 362, 1274
NlaIII CATG 7 cut(s) 121, 187, 244, 574, 1096, 1274, 1350
NlaIV GGNNCC 5 cut(s) 115, 171, 447, 990, 1141
NmeAIII GCCGAG 1 cut(s) 1217
NmuCI GTSAC 1 cut(s) 769
NruI TCGCGA 1 cut(s) 629
NsbI TGCGCA 1 cut(s) 762
NspI RCATGY 1 cut(s) 187
PauI GCGCGC 1 cut(s) 64
PceI AGGCCT 1 cut(s) 754
PciI ACATGT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PdiI GCCGGC 2 cut(s) 364, 1276
PfeI GAWTC 5 cut(s) 5, 59, 406, 493, 1343
PflMI CCANNNNNTGG 1 cut(s) 166
Ple19I CGATCG 1 cut(s) 193
PleI GAGTC 3 cut(s) 79, 111, 1009
PpsI GAGTC 3 cut(s) 79, 111, 1009
PpuMI RGGWCCY 1 cut(s) 989
PscI ACATGT 1 cut(s) 183
PshBI ATTAAT 2 cut(s) 807, 938
Psp1406I AACGTT 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 1119
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 5 cut(s) 115, 171, 447, 990, 1141
PspPI GGNCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
PspPPI RGGWCCY 1 cut(s) 989
PstNI CAGNNNCTG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 263
PteI GCGCGC 1 cut(s) 64
PvuI CGATCG 1 cut(s) 193
RruI TCGCGA 1 cut(s) 629
RsaI GTAC 3 cut(s) 56, 1126, 1266
RsaNI GTAC 3 cut(s) 55, 1125, 1265
SaqAI TTAA 5 cut(s) 260, 807, 938, 1038, 1044
Sau3AI GATC 6 cut(s) 190, 263, 283, 683, 799, 1177
Sau96I GGNCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
SchI GAGTC 3 cut(s) 80, 112, 1009
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 2 cut(s) 90, 529
SgrAI CRCCGGYG 1 cut(s) 362
SinI GGWCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 1103
Sse9I AATT 7 cut(s) 232, 332, 559, 581, 808, 889, 1210
SseBI AGGCCT 1 cut(s) 754
SspI AATATT 1 cut(s) 1261
SspMI CTAG 3 cut(s) 287, 719, 1104
StuI AGGCCT 1 cut(s) 754
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 17, 482, 538
TaiI ACGT 1 cut(s) 429
TaqI TCGA 6 cut(s) 189, 237, 509, 518, 1256, 1324
TaqII GACCGA 1 cut(s) 101
TasI AATT 7 cut(s) 232, 332, 559, 581, 808, 889, 1210
TatI WGTACW 1 cut(s) 1264
TauI GCSGC 5 cut(s) 42, 45, 354, 398, 1085
TfiI GAWTC 5 cut(s) 5, 59, 406, 493, 1343
Tru1I TTAA 5 cut(s) 260, 807, 938, 1038, 1044
Tru9I TTAA 5 cut(s) 260, 807, 938, 1038, 1044
TscAI CASTG 2 cut(s) 22, 661
TseFI GTSAC 1 cut(s) 769
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 6 cut(s) 663, 780, 801, 849, 1259, 1278
TspGWI ACGGA 2 cut(s) 563, 934
TspRI CASTG 2 cut(s) 22, 661
Van91I CCANNNNNTGG 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 259
VpaK11BI GGWCC 8 cut(s) 113, 169, 249, 643, 989, 1112, 1140, 1247
VspI ATTAAT 2 cut(s) 807, 938
XapI RAATTY 2 cut(s) 559, 581
XceI RCATGY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 3 cut(s) 287, 719, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.