Rmu_sc0002764.1_g000028

VQ motif

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002764.1
Physical Location & Seq
Forward (+)
104184 .. 105539
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002764.1_g000028.1.cds

Sequence Viewer

Length: 1356 bp
atggattccggtaacagcggaagtatgcagtcctcgagcggcggcgacgacgagtcgtacgactcacgcgcggagtcgatctcggccttgctgggtcccgccatgactaaccaccaccaccaccacccaccgcaagtaccgcaacaacaacaacaacaccaccgccatcatcctcatgttgagttcgacaccttatccaacatcttcgattcgaggctcacaaacccgaacccgctcctcaacctcgacatggtgtggtccaagacgttgagatctgacccgagtatgtccgatcttggcggccagaacgagctcagccaatcctttttgaccaatagtcaactaggaggacaagtcagcagaacaggagtcggcggcggcggaggagggtcatctacttttactcagatcccatcctcgtcagctccgaacgaccagacccacagcaacaacaacaacgtcggcggcgttcggaacagcaacccaaaaaagaggtcgagagcgtcgaggcgtgcacccactacggttctcaccacagacacaacaaacttccgagccatggttcaagaatttacaggtattcctgcacccccatttacgagttcgccttttcctagaagcaggttggatttgttcgggtcttcggcttcatctatggttagatcgggcccgggtcccaatcatatggatccttcttctcttcctccttatctgttgagaccatttgctcataaagctccactactaccttctcctccatctccatctttgttgccctctagtaattcaaatactaatagtaatattggtggttctaatctacaacagtctcagagtcttttgaacatgaacaacatgcaaaactcctcctcttcatcagttctgaattttcagtccctctttcaaaaccagcagcctcagccgaatttaccaaaatacccattacccggttcaggcaatattcttggctcctccaagtctcagggctctttgggtgtgcttgaagatcagtttggtttgagccatgggctaaatgtgcagcagcttcctaacatcgtgtcgtcgtcgtcctcggatggtggccgtacgcttcagcagcagcaacctaggcacgacaataaccagaggacgacagcgacgacaatgaactgggttgacaacaacaacaagaacgacggcaatgtcgatcttctgaggtccgtcaatgggaattacagtaatggcaaactaaactacgcggcttcttcttcgtcgaatgttgtcgataaagctggggtgcagctggagaataatgtgagtactactacagctagaagtgaaggtatggtggaatcatggatttgctcttcagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

48.24

Weight (kDa)

6.95

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012018)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1181
Acc36I ACCTGC 1 cut(s) 612
AccBSI CCGCTC 2 cut(s) 39, 235
AccII CGCG 3 cut(s) 69, 71, 1238
AclWI GGATC 3 cut(s) 403, 683, 696
AcoI YGGCCR 2 cut(s) 301, 1081
AcsI RAATTY 3 cut(s) 569, 886, 925
AcuI CTGAAG 2 cut(s) 1076, 1332
AfaI GTAC 4 cut(s) 59, 138, 1087, 1300
AfiI CCNNNNNNNGG 5 cut(s) 250, 559, 947, 953, 1206
AgsI TTSAA 5 cut(s) 566, 789, 844, 905, 1004
AhdI GACNNNNNGTC 2 cut(s) 52, 336
AjuI GAANNNNNNNTTGG 2 cut(s) 996, 1028
AluBI AGCT 7 cut(s) 313, 425, 737, 1045, 1271, 1282, 1310
AluI AGCT 7 cut(s) 313, 425, 737, 1045, 1271, 1282, 1310
Alw21I GWGCWC 2 cut(s) 315, 517
Alw26I GTCTC 3 cut(s) 712, 834, 984
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 3 cut(s) 403, 683, 696
Ama87I CYCGRG 3 cut(s) 34, 280, 670
AoxI GGCC 4 cut(s) 84, 301, 667, 1081
ApaI GGGCCC 1 cut(s) 671
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 6 cut(s) 913, 1039, 1042, 1096, 1099, 1279
ApoI RAATTY 3 cut(s) 569, 886, 925
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AspA2I CCTAGG 1 cut(s) 1106
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 6 cut(s) 95, 258, 667, 668, 674, 1197
AsuC2I CCSGG 3 cut(s) 671, 672, 948
AsuHPI GGTGA 1 cut(s) 523
AvaI CYCGRG 3 cut(s) 34, 280, 670
AvaII GGWCC 4 cut(s) 95, 258, 674, 1197
AvrII CCTAGG 1 cut(s) 1106
BaeGI GKGCMC 2 cut(s) 517, 671
BamHI GGATCC 1 cut(s) 688
BanII GRGCYC 3 cut(s) 315, 671, 989
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 2 cut(s) 315, 517
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 6 cut(s) 925, 1051, 1054, 1108, 1111, 1291
BccI CCATC 5 cut(s) 174, 421, 766, 772, 1070
BceAI ACGGC 2 cut(s) 1068, 1192
BcnI CCSGG 3 cut(s) 671, 672, 948
BcoDI GTCTC 3 cut(s) 712, 834, 984
BfaI CTAG 5 cut(s) 344, 615, 780, 1107, 1311
BfmI CTRYAG 1 cut(s) 1305
BfuAI ACCTGC 1 cut(s) 612
BglII AGATCT 1 cut(s) 272
BlnI CCTAGG 1 cut(s) 1106
BlpI GCTNAGC 1 cut(s) 314
BmcAI AGTACT 1 cut(s) 1300
Bme1390I CCNGG 3 cut(s) 671, 672, 948
Bme18I GGWCC 4 cut(s) 95, 258, 674, 1197
BmeRI GACNNNNNGTC 2 cut(s) 52, 336
BmeT110I CYCGRG 3 cut(s) 34, 280, 670
BmgT120I GGNCC 6 cut(s) 95, 258, 667, 668, 674, 1197
BmiI GGNNCC 7 cut(s) 96, 97, 669, 675, 676, 690, 970
BmrFI CCNGG 3 cut(s) 671, 672, 948
BmrI ACTGGG 1 cut(s) 1159
BmuI ACTGGG 1 cut(s) 1159
BpiI GAAGAC 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 1304
Bpu10I CCTNAGC 1 cut(s) 918
Bpu1102I GCTNAGC 1 cut(s) 314
BpuMI CCSGG 3 cut(s) 671, 672, 948
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 5 cut(s) 558, 670, 1024, 1071, 1106
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 559, 947, 953, 1206
Bse1I ACTGG 1 cut(s) 1154
Bse3DI GCAATG 1 cut(s) 1186
BseDI CCNNGG 5 cut(s) 558, 670, 1024, 1071, 1106
BseGI GGATG 3 cut(s) 169, 413, 1081
BseLI CCNNNNNNNGG 5 cut(s) 250, 559, 947, 953, 1206
BseMI GCAATG 1 cut(s) 1186
BseMII CTCAG 6 cut(s) 328, 419, 845, 932, 995, 1184
BseNI ACTGG 1 cut(s) 1154
BseRI GAGGAG 6 cut(s) 227, 399, 744, 856, 859, 961
BseSI GKGCMC 2 cut(s) 517, 671
BseXI GCAGC 6 cut(s) 925, 1051, 1054, 1108, 1111, 1291
BseYI CCCAGC 2 cut(s) 91, 1271
BsgI GTGCAG 3 cut(s) 570, 1058, 1298
Bsh1236I CGCG 3 cut(s) 69, 71, 1238
BshFI GGCC 4 cut(s) 86, 303, 669, 1083
BsiHKAI GWGCWC 2 cut(s) 315, 517
BsiHKCI CYCGRG 3 cut(s) 34, 280, 670
BsiSI CCGG 3 cut(s) 9, 671, 948
BsiWI CGTACG 2 cut(s) 57, 1085
BslFI GGGAC 3 cut(s) 81, 660, 880
BslI CCNNNNNNNGG 5 cut(s) 250, 559, 947, 953, 1206
BsmAI GTCTC 3 cut(s) 712, 834, 984
BsmFI GGGAC 3 cut(s) 81, 660, 880
BsnI GGCC 4 cut(s) 86, 303, 669, 1083
Bso31I GGTCTC 1 cut(s) 712
BsoBI CYCGRG 3 cut(s) 34, 280, 670
Bsp120I GGGCCC 1 cut(s) 667
Bsp1286I GDGCHC 4 cut(s) 315, 517, 671, 989
Bsp143I GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
Bsp1720I GCTNAGC 1 cut(s) 314
Bsp19I CCATGG 2 cut(s) 558, 1024
BspANI GGCC 4 cut(s) 86, 303, 669, 1083
BspCNI CTCAG 6 cut(s) 327, 418, 844, 931, 994, 1185
BspFNI CGCG 3 cut(s) 69, 71, 1238
BspLI GGNNCC 7 cut(s) 96, 97, 669, 675, 676, 690, 970
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 3 cut(s) 403, 683, 696
BspQI GCTCTTC 1 cut(s) 1351
BspTNI GGTCTC 1 cut(s) 712
BsrBI CCGCTC 2 cut(s) 39, 235
BsrDI GCAATG 1 cut(s) 1186
BsrI ACTGG 1 cut(s) 1154
BssECI CCNNGG 5 cut(s) 558, 670, 1024, 1071, 1106
BssMI GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
BssT1I CCWWGG 3 cut(s) 558, 1024, 1106
Bst4CI ACNGT 3 cut(s) 526, 828, 1217
Bst6I CTCTTC 3 cut(s) 705, 877, 1351
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 6 cut(s) 314, 405, 831, 918, 981, 1193
BstDSI CCRYGG 2 cut(s) 558, 1024
BstF5I GGATG 3 cut(s) 169, 413, 1081
BstFNI CGCG 3 cut(s) 69, 71, 1238
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 8 cut(s) 81, 275, 295, 411, 665, 691, 1009, 1189
BstMAI GTCTC 3 cut(s) 712, 834, 984
BstMBI GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
BstMWI GCNNNNNNNGC 6 cut(s) 139, 734, 919, 1036, 1096, 1108
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 3 cut(s) 669, 670, 946
BstSFI CTRYAG 1 cut(s) 1305
BstSLI GKGCMC 2 cut(s) 517, 671
BstUI CGCG 3 cut(s) 69, 71, 1238
BstV1I GCAGC 6 cut(s) 925, 1051, 1054, 1108, 1111, 1291
BstV2I GAAGAC 1 cut(s) 633
BstX2I RGATCY 3 cut(s) 272, 408, 688
BstXI CCANNNNNNTGG 1 cut(s) 685
BstYI RGATCY 3 cut(s) 272, 408, 688
BsuRI GGCC 4 cut(s) 86, 303, 669, 1083
BtgI CCRYGG 2 cut(s) 558, 1024
BtsCI GGATG 3 cut(s) 169, 413, 1081
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 6 cut(s) 95, 258, 667, 668, 674, 1197
Cfr9I CCCGGG 1 cut(s) 670
CseI GACGC 1 cut(s) 492
Csp6I GTAC 4 cut(s) 58, 137, 1086, 1299
CviAII CATG 8 cut(s) 103, 176, 250, 559, 847, 856, 1025, 1335
CviQI GTAC 4 cut(s) 58, 137, 1086, 1299
DdeI CTNAG 6 cut(s) 314, 405, 831, 918, 981, 1193
DpnI GATC 8 cut(s) 80, 274, 294, 410, 664, 690, 1008, 1188
DpnII GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
DrdI GACNNNNNNGTC 1 cut(s) 1181
DriI GACNNNNNGTC 2 cut(s) 52, 336
DseDI GACNNNNNNGTC 1 cut(s) 1181
EaeI YGGCCR 2 cut(s) 301, 1081
Eam1104I CTCTTC 3 cut(s) 705, 877, 1351
Eam1105I GACNNNNNGTC 2 cut(s) 52, 336
EarI CTCTTC 3 cut(s) 705, 877, 1351
EciI GGCGGA 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 3 cut(s) 558, 1024, 1106
Eco24I GRGCYC 3 cut(s) 315, 671, 989
Eco31I GGTCTC 1 cut(s) 712
Eco47I GGWCC 4 cut(s) 95, 258, 674, 1197
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 1076, 1332
Eco88I CYCGRG 3 cut(s) 34, 280, 670
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 2 cut(s) 95, 674
EcoT14I CCWWGG 3 cut(s) 558, 1024, 1106
EcoT38I GRGCYC 3 cut(s) 315, 671, 989
ErhI CCWWGG 3 cut(s) 558, 1024, 1106
FaeI CATG 8 cut(s) 106, 179, 253, 562, 850, 859, 1028, 1338
FaqI GGGAC 3 cut(s) 81, 660, 880
FatI CATG 8 cut(s) 102, 175, 249, 558, 846, 855, 1024, 1334
FauI CCCGC 2 cut(s) 106, 240
FauNDI CATATG 1 cut(s) 684
FokI GGATG 3 cut(s) 156, 400, 1088
FriOI GRGCYC 3 cut(s) 315, 671, 989
FspBI CTAG 5 cut(s) 344, 615, 780, 1107, 1311
GlaI GCGC 1 cut(s) 70
GsaI CCCAGC 2 cut(s) 95, 1275
GsuI CTGGAG 1 cut(s) 1304
HaeIII GGCC 4 cut(s) 86, 303, 669, 1083
HapII CCGG 3 cut(s) 9, 671, 948
HgaI GACGC 1 cut(s) 492
HhaI GCGC 1 cut(s) 71
Hin1II CATG 8 cut(s) 106, 179, 253, 562, 850, 859, 1028, 1338
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 2 cut(s) 341, 1156
HindII GTYRAC 2 cut(s) 341, 1156
HinfI GANTC 8 cut(s) 5, 53, 62, 74, 209, 369, 835, 1331
HpaII CCGG 3 cut(s) 9, 671, 948
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 3 cut(s) 341, 515, 1156
Hpy188III TCNNGA 2 cut(s) 498, 566
Hpy8I GTNNAC 3 cut(s) 341, 515, 1156
Hpy99I CGWCG 9 cut(s) 50, 53, 464, 508, 1066, 1069, 1141, 1178, 1255
HpyAV CCTTC 3 cut(s) 702, 759, 1313
HpyCH4III ACNGT 3 cut(s) 526, 828, 1217
HpyCH4IV ACGT 2 cut(s) 266, 459
HpyCH4V TGCA 6 cut(s) 28, 515, 587, 859, 1039, 1279
HpyF10VI GCNNNNNNNGC 6 cut(s) 139, 734, 919, 1036, 1096, 1108
HpyF3I CTNAG 6 cut(s) 314, 405, 831, 918, 981, 1193
HpySE526I ACGT 2 cut(s) 266, 459
Hsp92II CATG 8 cut(s) 106, 179, 253, 562, 850, 859, 1028, 1338
HspAI GCGC 1 cut(s) 69
KflI GGGWCCC 2 cut(s) 95, 674
Kzo9I GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
LguI GCTCTTC 1 cut(s) 1351
LmnI GCTCC 4 cut(s) 240, 430, 742, 974
Lsp1109I GCAGC 6 cut(s) 925, 1051, 1054, 1108, 1111, 1291
MaeI CTAG 5 cut(s) 344, 615, 780, 1107, 1311
MaeII ACGT 2 cut(s) 266, 459
MaeIII GTNAC 1 cut(s) 11
MalI GATC 8 cut(s) 80, 274, 294, 410, 664, 690, 1008, 1188
MbiI CCGCTC 2 cut(s) 39, 235
MboI GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
MflI RGATCY 3 cut(s) 272, 408, 688
MhlI GDGCHC 4 cut(s) 315, 517, 671, 989
MluCI AATT 5 cut(s) 569, 784, 886, 925, 1210
MlyI GAGTC 5 cut(s) 56, 62, 83, 378, 844
MmeI TCCRAC 2 cut(s) 222, 606
MseI TTAA 1 cut(s) 1354
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 18, 1282
MspI CCGG 3 cut(s) 9, 671, 948
MspR9I CCNGG 3 cut(s) 671, 672, 948
MvnI CGCG 3 cut(s) 69, 71, 1238
MwoI GCNNNNNNNGC 6 cut(s) 139, 734, 919, 1036, 1096, 1108
NciI CCSGG 3 cut(s) 671, 672, 948
NcoI CCATGG 2 cut(s) 558, 1024
NdeI CATATG 1 cut(s) 684
NdeII GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
NlaIII CATG 8 cut(s) 106, 179, 253, 562, 850, 859, 1028, 1338
NlaIV GGNNCC 7 cut(s) 96, 97, 669, 675, 676, 690, 970
NmeAIII GCCGAG 1 cut(s) 62
NspI RCATGY 1 cut(s) 859
PaeR7I CTCGAG 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 1351
PcsI WCGNNNNNNNCGW 6 cut(s) 57, 425, 465, 503, 1136, 1182
PfeI GAWTC 3 cut(s) 5, 209, 1331
Pfl23II CGTACG 2 cut(s) 57, 1085
PleI GAGTC 5 cut(s) 56, 61, 82, 377, 843
PpsI GAGTC 5 cut(s) 56, 61, 82, 377, 843
PpuMI RGGWCCY 2 cut(s) 95, 674
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 2 cut(s) 95, 674
PspFI CCCAGC 2 cut(s) 91, 1271
PspLI CGTACG 2 cut(s) 57, 1085
PspN4I GGNNCC 7 cut(s) 96, 97, 669, 675, 676, 690, 970
PspOMI GGGCCC 1 cut(s) 667
PspPI GGNCC 6 cut(s) 95, 258, 667, 668, 674, 1197
PspPPI RGGWCCY 2 cut(s) 95, 674
PspXI VCTCGAGB 1 cut(s) 34
PsuI RGATCY 3 cut(s) 272, 408, 688
PvuII CAGCTG 1 cut(s) 1282
RsaI GTAC 4 cut(s) 59, 138, 1087, 1300
RsaNI GTAC 4 cut(s) 58, 137, 1086, 1299
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 1351
SaqAI TTAA 1 cut(s) 1354
Sau3AI GATC 8 cut(s) 78, 272, 292, 408, 662, 688, 1006, 1186
Sau96I GGNCC 6 cut(s) 95, 258, 667, 668, 674, 1197
ScaI AGTACT 1 cut(s) 1300
SchI GAGTC 5 cut(s) 56, 62, 83, 378, 844
ScrFI CCNGG 3 cut(s) 671, 672, 948
SduI GDGCHC 4 cut(s) 315, 517, 671, 989
SfcI CTRYAG 1 cut(s) 1305
Sfr274I CTCGAG 1 cut(s) 34
SinI GGWCC 4 cut(s) 95, 258, 674, 1197
SlaI CTCGAG 1 cut(s) 34
SmaI CCCGGG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 5 cut(s) 569, 784, 886, 925, 1210
SspI AATATT 2 cut(s) 805, 961
SspMI CTAG 5 cut(s) 344, 615, 780, 1107, 1311
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 3 cut(s) 669, 670, 946
StyI CCWWGG 3 cut(s) 558, 1024, 1106
TaaI ACNGT 3 cut(s) 526, 828, 1217
TaiI ACGT 2 cut(s) 269, 462
TasI AATT 5 cut(s) 569, 784, 886, 925, 1210
TatI WGTACW 1 cut(s) 1298
TauI GCSGC 7 cut(s) 42, 45, 303, 378, 381, 468, 1241
TfiI GAWTC 3 cut(s) 5, 209, 1331
Tru1I TTAA 1 cut(s) 1354
Tru9I TTAA 1 cut(s) 1354
TseI GCWGC 6 cut(s) 913, 1039, 1042, 1096, 1099, 1279
TspDTI ATGAA 4 cut(s) 639, 863, 864, 1160
TspGWI ACGGA 1 cut(s) 1189
TspMI CCCGGG 1 cut(s) 670
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 4 cut(s) 95, 258, 674, 1197
XapI RAATTY 3 cut(s) 569, 886, 925
XceI RCATGY 1 cut(s) 859
XhoI CTCGAG 1 cut(s) 34
XmaI CCCGGG 1 cut(s) 670
XmaJI CCTAGG 1 cut(s) 1106
XspI CTAG 5 cut(s) 344, 615, 780, 1107, 1311
ZrmI AGTACT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.