VQ motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G65170 AT5G65170 |
| fragaria_vesca | FvH4_1g21110 |
| malus_domestica | MD01G1027700.v1.1 MD15G1325900.v1.1 |
| prunus_persica | Prupe.6G183200_v2.0.a1 Prupe.6G183200_v2.0.a1 |
| pyrus_communis | pycom01g05580 pycom15g28700 |
| rosa_chinensis | RchiOBHm_Chr2g0114891 |
| rosa_laevigata | RLG00000018131 |
| rosa_multiflora | Rmu_sc0002764.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00130390 |
| rosa_rugosa | Rorug02G0191400 |
| rosa_samantha | Rh2AG250000 Rh2BG259600 Rh2CG254400 Rh2DG258200 |
| rosa_wichuraiana | Rw2G019500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1181 |
| Acc36I | ACCTGC | 1 cut(s) | 612 |
| AccBSI | CCGCTC | 2 cut(s) | 39, 235 |
| AccII | CGCG | 3 cut(s) | 69, 71, 1238 |
| AclWI | GGATC | 3 cut(s) | 403, 683, 696 |
| AcoI | YGGCCR | 2 cut(s) | 301, 1081 |
| AcsI | RAATTY | 3 cut(s) | 569, 886, 925 |
| AcuI | CTGAAG | 2 cut(s) | 1076, 1332 |
| AfaI | GTAC | 4 cut(s) | 59, 138, 1087, 1300 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 250, 559, 947, 953, 1206 |
| AgsI | TTSAA | 5 cut(s) | 566, 789, 844, 905, 1004 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 52, 336 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 996, 1028 |
| AluBI | AGCT | 7 cut(s) | 313, 425, 737, 1045, 1271, 1282, 1310 |
| AluI | AGCT | 7 cut(s) | 313, 425, 737, 1045, 1271, 1282, 1310 |
| Alw21I | GWGCWC | 2 cut(s) | 315, 517 |
| Alw26I | GTCTC | 3 cut(s) | 712, 834, 984 |
| Alw44I | GTGCAC | 1 cut(s) | 513 |
| AlwI | GGATC | 3 cut(s) | 403, 683, 696 |
| Ama87I | CYCGRG | 3 cut(s) | 34, 280, 670 |
| AoxI | GGCC | 4 cut(s) | 84, 301, 667, 1081 |
| ApaI | GGGCCC | 1 cut(s) | 671 |
| ApaLI | GTGCAC | 1 cut(s) | 513 |
| ApeKI | GCWGC | 6 cut(s) | 913, 1039, 1042, 1096, 1099, 1279 |
| ApoI | RAATTY | 3 cut(s) | 569, 886, 925 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| AspA2I | CCTAGG | 1 cut(s) | 1106 |
| AspLEI | GCGC | 1 cut(s) | 71 |
| AspS9I | GGNCC | 6 cut(s) | 95, 258, 667, 668, 674, 1197 |
| AsuC2I | CCSGG | 3 cut(s) | 671, 672, 948 |
| AsuHPI | GGTGA | 1 cut(s) | 523 |
| AvaI | CYCGRG | 3 cut(s) | 34, 280, 670 |
| AvaII | GGWCC | 4 cut(s) | 95, 258, 674, 1197 |
| AvrII | CCTAGG | 1 cut(s) | 1106 |
| BaeGI | GKGCMC | 2 cut(s) | 517, 671 |
| BamHI | GGATCC | 1 cut(s) | 688 |
| BanII | GRGCYC | 3 cut(s) | 315, 671, 989 |
| BbsI | GAAGAC | 1 cut(s) | 633 |
| Bbv12I | GWGCWC | 2 cut(s) | 315, 517 |
| BbvCI | CCTCAGC | 1 cut(s) | 918 |
| BbvI | GCAGC | 6 cut(s) | 925, 1051, 1054, 1108, 1111, 1291 |
| BccI | CCATC | 5 cut(s) | 174, 421, 766, 772, 1070 |
| BceAI | ACGGC | 2 cut(s) | 1068, 1192 |
| BcnI | CCSGG | 3 cut(s) | 671, 672, 948 |
| BcoDI | GTCTC | 3 cut(s) | 712, 834, 984 |
| BfaI | CTAG | 5 cut(s) | 344, 615, 780, 1107, 1311 |
| BfmI | CTRYAG | 1 cut(s) | 1305 |
| BfuAI | ACCTGC | 1 cut(s) | 612 |
| BglII | AGATCT | 1 cut(s) | 272 |
| BlnI | CCTAGG | 1 cut(s) | 1106 |
| BlpI | GCTNAGC | 1 cut(s) | 314 |
| BmcAI | AGTACT | 1 cut(s) | 1300 |
| Bme1390I | CCNGG | 3 cut(s) | 671, 672, 948 |
| Bme18I | GGWCC | 4 cut(s) | 95, 258, 674, 1197 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 52, 336 |
| BmeT110I | CYCGRG | 3 cut(s) | 34, 280, 670 |
| BmgT120I | GGNCC | 6 cut(s) | 95, 258, 667, 668, 674, 1197 |
| BmiI | GGNNCC | 7 cut(s) | 96, 97, 669, 675, 676, 690, 970 |
| BmrFI | CCNGG | 3 cut(s) | 671, 672, 948 |
| BmrI | ACTGGG | 1 cut(s) | 1159 |
| BmuI | ACTGGG | 1 cut(s) | 1159 |
| BpiI | GAAGAC | 1 cut(s) | 633 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 65, 97 |
| BpmI | CTGGAG | 1 cut(s) | 1304 |
| Bpu10I | CCTNAGC | 1 cut(s) | 918 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 314 |
| BpuMI | CCSGG | 3 cut(s) | 671, 672, 948 |
| BsaI | GGTCTC | 1 cut(s) | 712 |
| BsaJI | CCNNGG | 5 cut(s) | 558, 670, 1024, 1071, 1106 |
| BsaWI | WCCGGW | 1 cut(s) | 8 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 339, 369 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 250, 559, 947, 953, 1206 |
| Bse1I | ACTGG | 1 cut(s) | 1154 |
| Bse3DI | GCAATG | 1 cut(s) | 1186 |
| BseDI | CCNNGG | 5 cut(s) | 558, 670, 1024, 1071, 1106 |
| BseGI | GGATG | 3 cut(s) | 169, 413, 1081 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 250, 559, 947, 953, 1206 |
| BseMI | GCAATG | 1 cut(s) | 1186 |
| BseMII | CTCAG | 6 cut(s) | 328, 419, 845, 932, 995, 1184 |
| BseNI | ACTGG | 1 cut(s) | 1154 |
| BseRI | GAGGAG | 6 cut(s) | 227, 399, 744, 856, 859, 961 |
| BseSI | GKGCMC | 2 cut(s) | 517, 671 |
| BseXI | GCAGC | 6 cut(s) | 925, 1051, 1054, 1108, 1111, 1291 |
| BseYI | CCCAGC | 2 cut(s) | 91, 1271 |
| BsgI | GTGCAG | 3 cut(s) | 570, 1058, 1298 |
| Bsh1236I | CGCG | 3 cut(s) | 69, 71, 1238 |
| BshFI | GGCC | 4 cut(s) | 86, 303, 669, 1083 |
| BsiHKAI | GWGCWC | 2 cut(s) | 315, 517 |
| BsiHKCI | CYCGRG | 3 cut(s) | 34, 280, 670 |
| BsiSI | CCGG | 3 cut(s) | 9, 671, 948 |
| BsiWI | CGTACG | 2 cut(s) | 57, 1085 |
| BslFI | GGGAC | 3 cut(s) | 81, 660, 880 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 250, 559, 947, 953, 1206 |
| BsmAI | GTCTC | 3 cut(s) | 712, 834, 984 |
| BsmFI | GGGAC | 3 cut(s) | 81, 660, 880 |
| BsnI | GGCC | 4 cut(s) | 86, 303, 669, 1083 |
| Bso31I | GGTCTC | 1 cut(s) | 712 |
| BsoBI | CYCGRG | 3 cut(s) | 34, 280, 670 |
| Bsp120I | GGGCCC | 1 cut(s) | 667 |
| Bsp1286I | GDGCHC | 4 cut(s) | 315, 517, 671, 989 |
| Bsp143I | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 314 |
| Bsp19I | CCATGG | 2 cut(s) | 558, 1024 |
| BspANI | GGCC | 4 cut(s) | 86, 303, 669, 1083 |
| BspCNI | CTCAG | 6 cut(s) | 327, 418, 844, 931, 994, 1185 |
| BspFNI | CGCG | 3 cut(s) | 69, 71, 1238 |
| BspLI | GGNNCC | 7 cut(s) | 96, 97, 669, 675, 676, 690, 970 |
| BspMI | ACCTGC | 1 cut(s) | 612 |
| BspPI | GGATC | 3 cut(s) | 403, 683, 696 |
| BspQI | GCTCTTC | 1 cut(s) | 1351 |
| BspTNI | GGTCTC | 1 cut(s) | 712 |
| BsrBI | CCGCTC | 2 cut(s) | 39, 235 |
| BsrDI | GCAATG | 1 cut(s) | 1186 |
| BsrI | ACTGG | 1 cut(s) | 1154 |
| BssECI | CCNNGG | 5 cut(s) | 558, 670, 1024, 1071, 1106 |
| BssMI | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| BssT1I | CCWWGG | 3 cut(s) | 558, 1024, 1106 |
| Bst4CI | ACNGT | 3 cut(s) | 526, 828, 1217 |
| Bst6I | CTCTTC | 3 cut(s) | 705, 877, 1351 |
| BstC8I | GCNNGC | 1 cut(s) | 513 |
| BstDEI | CTNAG | 6 cut(s) | 314, 405, 831, 918, 981, 1193 |
| BstDSI | CCRYGG | 2 cut(s) | 558, 1024 |
| BstF5I | GGATG | 3 cut(s) | 169, 413, 1081 |
| BstFNI | CGCG | 3 cut(s) | 69, 71, 1238 |
| BstHHI | GCGC | 1 cut(s) | 71 |
| BstKTI | GATC | 8 cut(s) | 81, 275, 295, 411, 665, 691, 1009, 1189 |
| BstMAI | GTCTC | 3 cut(s) | 712, 834, 984 |
| BstMBI | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 139, 734, 919, 1036, 1096, 1108 |
| BstNSI | RCATGY | 1 cut(s) | 859 |
| BstSCI | CCNGG | 3 cut(s) | 669, 670, 946 |
| BstSFI | CTRYAG | 1 cut(s) | 1305 |
| BstSLI | GKGCMC | 2 cut(s) | 517, 671 |
| BstUI | CGCG | 3 cut(s) | 69, 71, 1238 |
| BstV1I | GCAGC | 6 cut(s) | 925, 1051, 1054, 1108, 1111, 1291 |
| BstV2I | GAAGAC | 1 cut(s) | 633 |
| BstX2I | RGATCY | 3 cut(s) | 272, 408, 688 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 685 |
| BstYI | RGATCY | 3 cut(s) | 272, 408, 688 |
| BsuRI | GGCC | 4 cut(s) | 86, 303, 669, 1083 |
| BtgI | CCRYGG | 2 cut(s) | 558, 1024 |
| BtsCI | GGATG | 3 cut(s) | 169, 413, 1081 |
| BveI | ACCTGC | 1 cut(s) | 612 |
| Cac8I | GCNNGC | 1 cut(s) | 513 |
| CfoI | GCGC | 1 cut(s) | 71 |
| Cfr13I | GGNCC | 6 cut(s) | 95, 258, 667, 668, 674, 1197 |
| Cfr9I | CCCGGG | 1 cut(s) | 670 |
| CseI | GACGC | 1 cut(s) | 492 |
| Csp6I | GTAC | 4 cut(s) | 58, 137, 1086, 1299 |
| CviAII | CATG | 8 cut(s) | 103, 176, 250, 559, 847, 856, 1025, 1335 |
| CviQI | GTAC | 4 cut(s) | 58, 137, 1086, 1299 |
| DdeI | CTNAG | 6 cut(s) | 314, 405, 831, 918, 981, 1193 |
| DpnI | GATC | 8 cut(s) | 80, 274, 294, 410, 664, 690, 1008, 1188 |
| DpnII | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1181 |
| DriI | GACNNNNNGTC | 2 cut(s) | 52, 336 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1181 |
| EaeI | YGGCCR | 2 cut(s) | 301, 1081 |
| Eam1104I | CTCTTC | 3 cut(s) | 705, 877, 1351 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 52, 336 |
| EarI | CTCTTC | 3 cut(s) | 705, 877, 1351 |
| EciI | GGCGGA | 1 cut(s) | 396 |
| Ecl136II | GAGCTC | 1 cut(s) | 313 |
| Eco130I | CCWWGG | 3 cut(s) | 558, 1024, 1106 |
| Eco24I | GRGCYC | 3 cut(s) | 315, 671, 989 |
| Eco31I | GGTCTC | 1 cut(s) | 712 |
| Eco47I | GGWCC | 4 cut(s) | 95, 258, 674, 1197 |
| Eco53kI | GAGCTC | 1 cut(s) | 313 |
| Eco57I | CTGAAG | 2 cut(s) | 1076, 1332 |
| Eco88I | CYCGRG | 3 cut(s) | 34, 280, 670 |
| EcoICRI | GAGCTC | 1 cut(s) | 313 |
| EcoO109I | RGGNCCY | 2 cut(s) | 95, 674 |
| EcoT14I | CCWWGG | 3 cut(s) | 558, 1024, 1106 |
| EcoT38I | GRGCYC | 3 cut(s) | 315, 671, 989 |
| ErhI | CCWWGG | 3 cut(s) | 558, 1024, 1106 |
| FaeI | CATG | 8 cut(s) | 106, 179, 253, 562, 850, 859, 1028, 1338 |
| FaqI | GGGAC | 3 cut(s) | 81, 660, 880 |
| FatI | CATG | 8 cut(s) | 102, 175, 249, 558, 846, 855, 1024, 1334 |
| FauI | CCCGC | 2 cut(s) | 106, 240 |
| FauNDI | CATATG | 1 cut(s) | 684 |
| FokI | GGATG | 3 cut(s) | 156, 400, 1088 |
| FriOI | GRGCYC | 3 cut(s) | 315, 671, 989 |
| FspBI | CTAG | 5 cut(s) | 344, 615, 780, 1107, 1311 |
| GlaI | GCGC | 1 cut(s) | 70 |
| GsaI | CCCAGC | 2 cut(s) | 95, 1275 |
| GsuI | CTGGAG | 1 cut(s) | 1304 |
| HaeIII | GGCC | 4 cut(s) | 86, 303, 669, 1083 |
| HapII | CCGG | 3 cut(s) | 9, 671, 948 |
| HgaI | GACGC | 1 cut(s) | 492 |
| HhaI | GCGC | 1 cut(s) | 71 |
| Hin1II | CATG | 8 cut(s) | 106, 179, 253, 562, 850, 859, 1028, 1338 |
| Hin6I | GCGC | 1 cut(s) | 69 |
| HinP1I | GCGC | 1 cut(s) | 69 |
| HincII | GTYRAC | 2 cut(s) | 341, 1156 |
| HindII | GTYRAC | 2 cut(s) | 341, 1156 |
| HinfI | GANTC | 8 cut(s) | 5, 53, 62, 74, 209, 369, 835, 1331 |
| HpaII | CCGG | 3 cut(s) | 9, 671, 948 |
| HphI | GGTGA | 1 cut(s) | 523 |
| Hpy166II | GTNNAC | 3 cut(s) | 341, 515, 1156 |
| Hpy188III | TCNNGA | 2 cut(s) | 498, 566 |
| Hpy8I | GTNNAC | 3 cut(s) | 341, 515, 1156 |
| Hpy99I | CGWCG | 9 cut(s) | 50, 53, 464, 508, 1066, 1069, 1141, 1178, 1255 |
| HpyAV | CCTTC | 3 cut(s) | 702, 759, 1313 |
| HpyCH4III | ACNGT | 3 cut(s) | 526, 828, 1217 |
| HpyCH4IV | ACGT | 2 cut(s) | 266, 459 |
| HpyCH4V | TGCA | 6 cut(s) | 28, 515, 587, 859, 1039, 1279 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 139, 734, 919, 1036, 1096, 1108 |
| HpyF3I | CTNAG | 6 cut(s) | 314, 405, 831, 918, 981, 1193 |
| HpySE526I | ACGT | 2 cut(s) | 266, 459 |
| Hsp92II | CATG | 8 cut(s) | 106, 179, 253, 562, 850, 859, 1028, 1338 |
| HspAI | GCGC | 1 cut(s) | 69 |
| KflI | GGGWCCC | 2 cut(s) | 95, 674 |
| Kzo9I | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| LguI | GCTCTTC | 1 cut(s) | 1351 |
| LmnI | GCTCC | 4 cut(s) | 240, 430, 742, 974 |
| Lsp1109I | GCAGC | 6 cut(s) | 925, 1051, 1054, 1108, 1111, 1291 |
| MaeI | CTAG | 5 cut(s) | 344, 615, 780, 1107, 1311 |
| MaeII | ACGT | 2 cut(s) | 266, 459 |
| MaeIII | GTNAC | 1 cut(s) | 11 |
| MalI | GATC | 8 cut(s) | 80, 274, 294, 410, 664, 690, 1008, 1188 |
| MbiI | CCGCTC | 2 cut(s) | 39, 235 |
| MboI | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| MflI | RGATCY | 3 cut(s) | 272, 408, 688 |
| MhlI | GDGCHC | 4 cut(s) | 315, 517, 671, 989 |
| MluCI | AATT | 5 cut(s) | 569, 784, 886, 925, 1210 |
| MlyI | GAGTC | 5 cut(s) | 56, 62, 83, 378, 844 |
| MmeI | TCCRAC | 2 cut(s) | 222, 606 |
| MseI | TTAA | 1 cut(s) | 1354 |
| MslI | CAYNNNNRTG | 1 cut(s) | 174 |
| MspA1I | CMGCKG | 2 cut(s) | 18, 1282 |
| MspI | CCGG | 3 cut(s) | 9, 671, 948 |
| MspR9I | CCNGG | 3 cut(s) | 671, 672, 948 |
| MvnI | CGCG | 3 cut(s) | 69, 71, 1238 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 139, 734, 919, 1036, 1096, 1108 |
| NciI | CCSGG | 3 cut(s) | 671, 672, 948 |
| NcoI | CCATGG | 2 cut(s) | 558, 1024 |
| NdeI | CATATG | 1 cut(s) | 684 |
| NdeII | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| NlaIII | CATG | 8 cut(s) | 106, 179, 253, 562, 850, 859, 1028, 1338 |
| NlaIV | GGNNCC | 7 cut(s) | 96, 97, 669, 675, 676, 690, 970 |
| NmeAIII | GCCGAG | 1 cut(s) | 62 |
| NspI | RCATGY | 1 cut(s) | 859 |
| PaeR7I | CTCGAG | 1 cut(s) | 34 |
| PciSI | GCTCTTC | 1 cut(s) | 1351 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 57, 425, 465, 503, 1136, 1182 |
| PfeI | GAWTC | 3 cut(s) | 5, 209, 1331 |
| Pfl23II | CGTACG | 2 cut(s) | 57, 1085 |
| PleI | GAGTC | 5 cut(s) | 56, 61, 82, 377, 843 |
| PpsI | GAGTC | 5 cut(s) | 56, 61, 82, 377, 843 |
| PpuMI | RGGWCCY | 2 cut(s) | 95, 674 |
| Psp124BI | GAGCTC | 1 cut(s) | 315 |
| Psp5II | RGGWCCY | 2 cut(s) | 95, 674 |
| PspFI | CCCAGC | 2 cut(s) | 91, 1271 |
| PspLI | CGTACG | 2 cut(s) | 57, 1085 |
| PspN4I | GGNNCC | 7 cut(s) | 96, 97, 669, 675, 676, 690, 970 |
| PspOMI | GGGCCC | 1 cut(s) | 667 |
| PspPI | GGNCC | 6 cut(s) | 95, 258, 667, 668, 674, 1197 |
| PspPPI | RGGWCCY | 2 cut(s) | 95, 674 |
| PspXI | VCTCGAGB | 1 cut(s) | 34 |
| PsuI | RGATCY | 3 cut(s) | 272, 408, 688 |
| PvuII | CAGCTG | 1 cut(s) | 1282 |
| RsaI | GTAC | 4 cut(s) | 59, 138, 1087, 1300 |
| RsaNI | GTAC | 4 cut(s) | 58, 137, 1086, 1299 |
| RseI | CAYNNNNRTG | 1 cut(s) | 174 |
| SacI | GAGCTC | 1 cut(s) | 315 |
| SapI | GCTCTTC | 1 cut(s) | 1351 |
| SaqAI | TTAA | 1 cut(s) | 1354 |
| Sau3AI | GATC | 8 cut(s) | 78, 272, 292, 408, 662, 688, 1006, 1186 |
| Sau96I | GGNCC | 6 cut(s) | 95, 258, 667, 668, 674, 1197 |
| ScaI | AGTACT | 1 cut(s) | 1300 |
| SchI | GAGTC | 5 cut(s) | 56, 62, 83, 378, 844 |
| ScrFI | CCNGG | 3 cut(s) | 671, 672, 948 |
| SduI | GDGCHC | 4 cut(s) | 315, 517, 671, 989 |
| SfcI | CTRYAG | 1 cut(s) | 1305 |
| Sfr274I | CTCGAG | 1 cut(s) | 34 |
| SinI | GGWCC | 4 cut(s) | 95, 258, 674, 1197 |
| SlaI | CTCGAG | 1 cut(s) | 34 |
| SmaI | CCCGGG | 1 cut(s) | 672 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 174 |
| SmlI | CTYRAG | 1 cut(s) | 34 |
| SmoI | CTYRAG | 1 cut(s) | 34 |
| Sse9I | AATT | 5 cut(s) | 569, 784, 886, 925, 1210 |
| SspI | AATATT | 2 cut(s) | 805, 961 |
| SspMI | CTAG | 5 cut(s) | 344, 615, 780, 1107, 1311 |
| SstI | GAGCTC | 1 cut(s) | 315 |
| StyD4I | CCNGG | 3 cut(s) | 669, 670, 946 |
| StyI | CCWWGG | 3 cut(s) | 558, 1024, 1106 |
| TaaI | ACNGT | 3 cut(s) | 526, 828, 1217 |
| TaiI | ACGT | 2 cut(s) | 269, 462 |
| TasI | AATT | 5 cut(s) | 569, 784, 886, 925, 1210 |
| TatI | WGTACW | 1 cut(s) | 1298 |
| TauI | GCSGC | 7 cut(s) | 42, 45, 303, 378, 381, 468, 1241 |
| TfiI | GAWTC | 3 cut(s) | 5, 209, 1331 |
| Tru1I | TTAA | 1 cut(s) | 1354 |
| Tru9I | TTAA | 1 cut(s) | 1354 |
| TseI | GCWGC | 6 cut(s) | 913, 1039, 1042, 1096, 1099, 1279 |
| TspDTI | ATGAA | 4 cut(s) | 639, 863, 864, 1160 |
| TspGWI | ACGGA | 1 cut(s) | 1189 |
| TspMI | CCCGGG | 1 cut(s) | 670 |
| VneI | GTGCAC | 1 cut(s) | 513 |
| VpaK11BI | GGWCC | 4 cut(s) | 95, 258, 674, 1197 |
| XapI | RAATTY | 3 cut(s) | 569, 886, 925 |
| XceI | RCATGY | 1 cut(s) | 859 |
| XhoI | CTCGAG | 1 cut(s) | 34 |
| XmaI | CCCGGG | 1 cut(s) | 670 |
| XmaJI | CCTAGG | 1 cut(s) | 1106 |
| XspI | CTAG | 5 cut(s) | 344, 615, 780, 1107, 1311 |
| ZrmI | AGTACT | 1 cut(s) | 1300 |