Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002448

Physical Location & Seq

Genomic Coordinates Forward (+)

41966141 .. 41967484

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1352000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCATACTTGAGCATGGGAGAAGCTCACAGAAGAATTACCGACTACCTCAACCGCTTCTCCGATGCCGACGCGCTCAACATCTTCAAGGACTTCAATAGATTGATCAAACAGTCCGATAACGACTCGCAGTTTGGCAAAATTTTGGTGCATCTCTTCCGGGCTTTTCAGAGCTACCGAATTGGGAATTTCATTGATTCCTATCAGGCATATGAAAAACCGGCAAATGCTTTTATTCAGGAGTTTCGGAATTGGGATACGGCATGGGCTTTGCCAGCATTGTATGTCATTGCTTATGACATTAGGGTTCTAGCTGAGAGGGCTGATAAGGAATTGGCTTTGAATGGAAAGTCTCCAGAGAAGTGGAAGGGAGCTGGCTCTTTCCTTATGAAAGTCTTTGGCGTTCTTGCTCTTCACCTTTGCCGCGGCGTCATAAGGAGCATTGGAACTGCGCGAATATTTGATTTTGTGGAATTCCCTAAGAGAGATAAGGTCAGCATTGCCTTTGGCAGAGCAAATGCAATTTTCTTTTCTTTCCTTTTCTGCTCCCTCTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

187

Amino Acids

21.41

Weight (kDa)

9.39

Isoelectric Point (pI)

26.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19560 AT2G19560
fragaria_vesca	FvH4_1g07290
malus_domestica	MD02G1077700.v1.1 MD15G1206300.v1.1 MD15G1352000.v1.1
prunus_persica	Prupe.7G211100_v2.0.a1
pyrus_communis	pycom02g06170 pycom02g06180 pycom15g18270 pycom15g18280
rosa_chinensis	RchiOBHm_Chr2g0093221 RchiOBHm_Chr7g0206721 RchiOBHm_Chr7g0207111 RchiOBHm_Chr7g0207281 RchiOBHm_Chr7g0230831
rosa_laevigata	RLG00000003298 RLG00000003300 RLG00000016379
rosa_multiflora	Rmu_sc0003724.1_g000013 Rmu_sc0010104.1_g000002 Rmu_sc0032537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148400 Rroxscaffold_3G00251220
rosa_rugosa	Rorug01G0015100 Rorug02G0033600 Rorug02G0033600
rosa_samantha	Rh2AG079800 Rh2BG080700 Rh2CG083000 Rh2DG078700 Rh7AG229900 Rh7AG230000 Rh7AG230600 Rh7AG230700 Rh7AG414800 Rh7CG245200 Rh7CG246600 Rh7CG433500
rosa_wichuraiana	Rw2G006720 Rw7G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	74, 426, 454
AciI	CCGC	3 cut(s)	55, 424, 426
AcsI	RAATTY	3 cut(s)	141, 187, 473
AcyI	GRCGYC	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	88, 97, 343
AluBI	AGCT	4 cut(s)	26, 174, 314, 374
AluI	AGCT	4 cut(s)	26, 174, 314, 374
Alw26I	GTCTC	1 cut(s)	357
ApoI	RAATTY	3 cut(s)	141, 187, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	2 cut(s)	76, 454
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	424, 427
BlsI	GCNGC	2 cut(s)	425, 428
Bme1390I	CCNGG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	55, 160
BpmI	CTGGAG	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse118I	RCCGGY	1 cut(s)	220
Bse3DI	GCAATG	2 cut(s)	288, 498
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	201
BseMI	GCAATG	2 cut(s)	288, 498
BseMII	CTCAG	1 cut(s)	306
Bsh1236I	CGCG	3 cut(s)	74, 426, 454
BsiSI	CCGG	2 cut(s)	160, 221
BsmAI	GTCTC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	55, 424, 426
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	3 cut(s)	74, 426, 454
BspQI	GCTCTTC	1 cut(s)	417
BsrDI	GCAATG	2 cut(s)	288, 498
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	2 cut(s)	161, 417
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	276, 376
BstDEI	CTNAG	2 cut(s)	315, 480
BstDSI	CCRYGG	1 cut(s)	424
BstFNI	CGCG	3 cut(s)	74, 426, 454
BstHHI	GCGC	2 cut(s)	76, 454
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 320
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	3 cut(s)	74, 426, 454
BstXI	CCANNNNNNTGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	276, 376
CfoI	GCGC	2 cut(s)	76, 454
Cfr10I	RCCGGY	1 cut(s)	220
Cfr42I	CCGCGG	1 cut(s)	427
CseI	GACGC	2 cut(s)	80, 418
CviAII	CATG	2 cut(s)	16, 264
CviJI	RGCY	9 cut(s)	26, 164, 174, 269, 314, 323, 338, 374, 378
CviKI_1	RGCY	9 cut(s)	26, 164, 174, 269, 314, 323, 338, 374, 378
DdeI	CTNAG	2 cut(s)	315, 480
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	161, 417
EarI	CTCTTC	2 cut(s)	161, 417
EcoRI	GAATTC	1 cut(s)	473
FaeI	CATG	2 cut(s)	19, 267
FaiI	YATR	9 cut(s)	7, 17, 211, 213, 265, 285, 297, 389, 434
FatI	CATG	2 cut(s)	15, 263
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	424, 427
Fsp4HI	GCNGC	2 cut(s)	424, 427
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	75, 453
GluI	GCNGC	2 cut(s)	424, 427
GsuI	CTGGAG	1 cut(s)	339
HapII	CCGG	2 cut(s)	160, 221
HgaI	GACGC	2 cut(s)	80, 418
HhaI	GCGC	2 cut(s)	76, 454
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	19, 267
Hin6I	GCGC	2 cut(s)	74, 452
HinP1I	GCGC	2 cut(s)	74, 452
HinfI	GANTC	2 cut(s)	125, 197
HpaII	CCGG	2 cut(s)	160, 221
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	4 cut(s)	64, 118, 171, 249
Hpy188III	TCNNGA	2 cut(s)	239, 356
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	151, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 320
HpyF3I	CTNAG	2 cut(s)	315, 480
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	19, 267
HspAI	GCGC	2 cut(s)	74, 452
Ksp22I	TGATCA	1 cut(s)	105
KspI	CCGCGG	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	105
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	3 cut(s)	371, 438, 551
LpnPI	CCDG	7 cut(s)	173, 191, 224, 234, 288, 360, 369
LweI	GCATC	2 cut(s)	55, 160
MaeI	CTAG	1 cut(s)	311
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	4 cut(s)	45, 76, 148, 404
MluCI	AATT	8 cut(s)	36, 141, 180, 187, 250, 332, 473, 522
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	59, 312, 560
MspA1I	CMGCKG	1 cut(s)	426
MspI	CCGG	2 cut(s)	160, 221
MspR9I	CCNGG	1 cut(s)	161
MvnI	CGCG	3 cut(s)	74, 426, 454
MwoI	GCNNNNNNNGC	2 cut(s)	275, 320
NciI	CCSGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	19, 267
PciSI	GCTCTTC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	425, 428
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	427
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	2 cut(s)	424, 427
Sau3AI	GATC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	7 cut(s)	28, 51, 176, 316, 376, 420, 495
SfaNI	GCATC	2 cut(s)	55, 160
Sfr303I	CCGCGG	1 cut(s)	427
SgrBI	CCGCGG	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	8 cut(s)	36, 141, 180, 187, 250, 332, 473, 522
SsiI	CCGC	3 cut(s)	55, 424, 426
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	114
TasI	AATT	8 cut(s)	36, 141, 180, 187, 250, 332, 473, 522
TauI	GCSGC	2 cut(s)	426, 429
TfiI	GAWTC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	181, 228, 404
XapI	RAATTY	3 cut(s)	141, 187, 473
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.