Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002448

Physical Location & Seq

Genomic Coordinates Forward (+)

24540754 .. 24546719

Gene Structure 5966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCTTTCCGATCATTGTGTGGTGTATGGAAATGTTGTGCAAGCTCTAAGAAGAGGCGACCTCCGACTTCTTCGGCATGCTTTTCAAGAGCATGAAGACAGGTTCTTTAGGTTTGCTGTATATCTTGTCCTAGAGAAGCTAGAACTTCAGGTCTATCAGAGATTGTTGAAAAAAGATTTATATTATCCAAAAGCAGAAGGACCCAAGCAAAGCTCACCAGCTGAAGTTGGAAGTAATTGTCAAAGCATTGAAATGGTCATTGATGTGGATGAGGTGGAGGGCATAATGGCGATGCTAATACACAAAAGTCTGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAAGTCACCCAAATCTAGCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTATGTGAATATATGCCTAATAGGAGCTTAGAAGATCATCTTTTCAACAGGGTTTTGAACCCTCTTCCTTGGATCACGAGGTTACCAATAATGCTTGGTGCTGCTCAAGCTCGGATTGGCTTATCTACACGAGGGACTGGAAGTCCAGGTGATATATCGAGATTTCAAATCCTCCAACGTGCTCTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

206

Amino Acids

23.4

Weight (kDa)

7.73

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19560 AT2G19560
fragaria_vesca	FvH4_1g07290
malus_domestica	MD02G1077700.v1.1 MD15G1206300.v1.1 MD15G1352000.v1.1
prunus_persica	Prupe.7G211100_v2.0.a1
pyrus_communis	pycom02g06170 pycom02g06180 pycom15g18270 pycom15g18280
rosa_chinensis	RchiOBHm_Chr2g0093221 RchiOBHm_Chr7g0206721 RchiOBHm_Chr7g0207111 RchiOBHm_Chr7g0207281 RchiOBHm_Chr7g0230831
rosa_laevigata	RLG00000003298 RLG00000003300 RLG00000016379
rosa_multiflora	Rmu_sc0003724.1_g000013 Rmu_sc0010104.1_g000002 Rmu_sc0032537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148400 Rroxscaffold_3G00251220
rosa_rugosa	Rorug01G0015100 Rorug02G0033600 Rorug02G0033600
rosa_samantha	Rh2AG079800 Rh2BG080700 Rh2CG083000 Rh2DG078700 Rh7AG229900 Rh7AG230000 Rh7AG230600 Rh7AG230700 Rh7AG414800 Rh7CG245200 Rh7CG246600 Rh7CG433500
rosa_wichuraiana	Rw2G006720 Rw7G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	409, 422, 509
AcuI	CTGAAG	2 cut(s)	131, 243
AgsI	TTSAA	7 cut(s)	86, 169, 251, 341, 475, 487, 596
AhdI	GACNNNNNGTC	1 cut(s)	570
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	7 cut(s)	44, 139, 213, 221, 379, 456, 539
AluI	AGCT	7 cut(s)	44, 139, 213, 221, 379, 456, 539
Alw21I	GWGCWC	1 cut(s)	613
AlwI	GGATC	3 cut(s)	409, 422, 509
ApeKI	GCWGC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	207, 353, 590
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	414
BauI	CACGAG	2 cut(s)	505, 558
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	576
BfaI	CTAG	4 cut(s)	131, 140, 371, 383
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	200
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	202, 416
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpuEI	CTTGAG	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	10, 414, 463, 501
BspLI	GGNNCC	2 cut(s)	202, 416
BspPI	GGATC	3 cut(s)	409, 422, 509
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	4 cut(s)	10, 414, 463, 501
BssSI	CACGAG	2 cut(s)	505, 558
BssT1I	CCWWGG	1 cut(s)	497
Bst2BI	CACGAG	2 cut(s)	505, 558
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	46, 498
BstC8I	GCNNGC	3 cut(s)	42, 78, 330
BstDEI	CTNAG	2 cut(s)	47, 457
BstEII	GGTNACC	1 cut(s)	510
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	4 cut(s)	13, 417, 466, 504
BstMBI	GATC	4 cut(s)	10, 414, 463, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	42, 78, 330
Cfr13I	GGNCC	1 cut(s)	200
CviAII	CATG	2 cut(s)	77, 92
DdeI	CTNAG	2 cut(s)	47, 457
DpnI	GATC	4 cut(s)	12, 416, 465, 503
DpnII	GATC	4 cut(s)	10, 414, 463, 501
DriI	GACNNNNNGTC	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	46, 498
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	2 cut(s)	46, 498
Eco130I	CCWWGG	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	131, 243
Eco91I	GGTNACC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	2 cut(s)	80, 95
FalI	AAGNNNNNCTT	4 cut(s)	312, 344, 453, 485
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	2 cut(s)	76, 91
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	4 cut(s)	131, 140, 371, 383
GluI	GCNGC	1 cut(s)	531
Hin1II	CATG	2 cut(s)	80, 95
HindIII	AAGCTT	1 cut(s)	377
HphI	GGTGA	3 cut(s)	207, 353, 590
Hpy188I	TCNGA	4 cut(s)	10, 65, 159, 543
Hpy188III	TCNNGA	3 cut(s)	86, 505, 588
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	2 cut(s)	40, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	2 cut(s)	47, 457
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	2 cut(s)	80, 95
Kzo9I	GATC	4 cut(s)	10, 414, 463, 501
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	8 cut(s)	85, 134, 231, 296, 463, 552, 561, 588
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	4 cut(s)	131, 140, 371, 383
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	2 cut(s)	359, 510
MalI	GATC	4 cut(s)	12, 416, 465, 503
MboI	GATC	4 cut(s)	10, 414, 463, 501
MboII	GAAGA	5 cut(s)	62, 63, 107, 473, 485
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	2 cut(s)	235, 341
MmeI	TCCRAC	3 cut(s)	88, 208, 442
MslI	CAYNNNNRTG	2 cut(s)	251, 263
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	536
NdeII	GATC	4 cut(s)	10, 414, 463, 501
NlaIII	CATG	2 cut(s)	80, 95
NlaIV	GGNNCC	2 cut(s)	202, 416
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	80
PaeI	GCATGC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	532
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	574
PspEI	GGTNACC	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	202, 416
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	251, 263
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	4 cut(s)	10, 414, 463, 501
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	2 cut(s)	251, 263
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
SphI	GCATGC	1 cut(s)	80
Sse9I	AATT	2 cut(s)	235, 341
SspMI	CTAG	4 cut(s)	131, 140, 371, 383
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	497
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	1 cut(s)	587
TasI	AATT	2 cut(s)	235, 341
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	4 cut(s)	131, 140, 371, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.