Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002448

Physical Location & Seq

Genomic Coordinates Reverse (-)

45139265 .. 45146453

Gene Structure 7189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGATATAGAAATGTTGTGCAAGCTCTAAGAAGCGGCGACCTCCGACTTCTTCGGCATGCTTTTCAAGAGCATGAAGACAGGTTCTTTCGGTTTGCTGTATATCTTGTCCTAGAGAAGCTAGAACTTCAGGTCTATCAGAGATTGTTGAAAAAAGATGTAAGTTCCCAAGCAACTATAAAACCGCCCTCTGACAGTATAATTAGAGAGTTTTTGGTTAATTCTTTTATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

78

Amino Acids

9.25

Weight (kDa)

9.59

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19560 AT2G19560
fragaria_vesca	FvH4_1g07290
malus_domestica	MD02G1077700.v1.1 MD15G1206300.v1.1 MD15G1352000.v1.1
prunus_persica	Prupe.7G211100_v2.0.a1
pyrus_communis	pycom02g06170 pycom02g06180 pycom15g18270 pycom15g18280
rosa_chinensis	RchiOBHm_Chr2g0093221 RchiOBHm_Chr7g0206721 RchiOBHm_Chr7g0207111 RchiOBHm_Chr7g0207281 RchiOBHm_Chr7g0230831
rosa_laevigata	RLG00000003298 RLG00000003300 RLG00000016379
rosa_multiflora	Rmu_sc0003724.1_g000013 Rmu_sc0010104.1_g000002 Rmu_sc0032537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148400 Rroxscaffold_3G00251220
rosa_rugosa	Rorug01G0015100 Rorug02G0033600 Rorug02G0033600
rosa_samantha	Rh2AG079800 Rh2BG080700 Rh2CG083000 Rh2DG078700 Rh7AG229900 Rh7AG230000 Rh7AG230600 Rh7AG230700 Rh7AG414800 Rh7CG245200 Rh7CG246600 Rh7CG433500
rosa_wichuraiana	Rw2G006720 Rw7G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 185
AcuI	CTGAAG	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	68, 151
AluBI	AGCT	2 cut(s)	26, 121
AluI	AGCT	2 cut(s)	26, 121
BbsI	GAAGAC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	113, 122
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	36, 185
Bst4CI	ACNGT	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	24, 60
BstDEI	CTNAG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	24, 60
CviAII	CATG	2 cut(s)	59, 74
CviJI	RGCY	2 cut(s)	26, 121
CviKI_1	RGCY	2 cut(s)	26, 121
DdeI	CTNAG	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	113
FaeI	CATG	2 cut(s)	62, 77
FaiI	YATR	6 cut(s)	9, 60, 75, 103, 179, 200
FatI	CATG	2 cut(s)	58, 73
Fnu4HI	GCNGC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	113, 122
GluI	GCNGC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	62, 77
Hpy188I	TCNGA	3 cut(s)	47, 141, 193
Hpy188III	TCNNGA	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	62, 77
LpnPI	CCDG	2 cut(s)	67, 116
MaeI	CTAG	2 cut(s)	113, 122
MboII	GAAGA	2 cut(s)	44, 89
MluCI	AATT	2 cut(s)	201, 220
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	2 cut(s)	53, 199
MseI	TTAA	2 cut(s)	219, 235
NlaIII	CATG	2 cut(s)	62, 77
NspI	RCATGY	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	219, 235
SatI	GCNGC	1 cut(s)	37
SetI	ASST	5 cut(s)	28, 45, 86, 123, 135
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	2 cut(s)	201, 220
SsiI	CCGC	2 cut(s)	36, 185
SspMI	CTAG	2 cut(s)	113, 122
TaaI	ACNGT	1 cut(s)	197
TasI	AATT	2 cut(s)	201, 220
TauI	GCSGC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	219, 235
Tru9I	TTAA	2 cut(s)	219, 235
TspDTI	ATGAA	1 cut(s)	90
XceI	RCATGY	1 cut(s)	62
XspI	CTAG	2 cut(s)	113, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.