Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002448

Physical Location & Seq

Genomic Coordinates Reverse (-)

55783070 .. 55785394

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCATTAAGATTTGTGTTTCTCATGTACAAATTTGATGGTGAGAGGGTAACCAAAGAACATATAAAGAGGGCACTGGAGGTGCAGTATGGTGGGGAAGAGTATAGATATCTTGTGCAAGCTCTAAGAAGAGGCGGCCTCCAACTTCTTCGGCATGCCCTTCAAGGGCATGAAGACAGGTTCTTGAGGTTTGCTGTATATTTTATCCTAGAGAAGCTAGAACTTCAGAAGGACCCAAGCAAAGCTCACCAGCTGAAGTTGGAAGTAATTGTCAAAGCATTGAAATGGCTTGAAATGGTGGAAAGCATAATGGCGATACTAATATACAAAAGTCTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0031503 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048519 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0060968 GO:0065007 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

113

Amino Acids

13.48

Weight (kDa)

9.52

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19560 AT2G19560
fragaria_vesca	FvH4_1g07290
malus_domestica	MD02G1077700.v1.1 MD15G1206300.v1.1 MD15G1352000.v1.1
prunus_persica	Prupe.7G211100_v2.0.a1
pyrus_communis	pycom02g06170 pycom02g06180 pycom15g18270 pycom15g18280
rosa_chinensis	RchiOBHm_Chr2g0093221 RchiOBHm_Chr7g0206721 RchiOBHm_Chr7g0207111 RchiOBHm_Chr7g0207281 RchiOBHm_Chr7g0230831
rosa_laevigata	RLG00000003298 RLG00000003300 RLG00000016379
rosa_multiflora	Rmu_sc0003724.1_g000013 Rmu_sc0010104.1_g000002 Rmu_sc0032537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148400 Rroxscaffold_3G00251220
rosa_rugosa	Rorug01G0015100 Rorug02G0033600 Rorug02G0033600
rosa_samantha	Rh2AG079800 Rh2BG080700 Rh2CG083000 Rh2DG078700 Rh7AG229900 Rh7AG230000 Rh7AG230600 Rh7AG230700 Rh7AG414800 Rh7CG245200 Rh7CG246600 Rh7CG433500
rosa_wichuraiana	Rw2G006720 Rw7G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	2 cut(s)	209, 275
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	164, 283, 293
AluBI	AGCT	4 cut(s)	122, 217, 245, 253
AluI	AGCT	4 cut(s)	122, 217, 245, 253
AoxI	GGCC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	53, 239
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	180
BccI	CCATC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	209, 218
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	165
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	27
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	93, 124
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	120, 156
BstDEI	CTNAG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	120, 156
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	3 cut(s)	25, 155, 170
CviJI	RGCY	6 cut(s)	122, 138, 217, 245, 253, 289
CviKI_1	RGCY	6 cut(s)	122, 138, 217, 245, 253, 289
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	93, 124
EarI	CTCTTC	2 cut(s)	93, 124
Eco32I	GATATC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	209, 275
Eco91I	GGTNACC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	110
FaeI	CATG	3 cut(s)	28, 158, 173
FatI	CATG	3 cut(s)	24, 154, 169
Fnu4HI	GCNGC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	2 cut(s)	209, 218
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	28, 158, 173
HphI	GGTGA	2 cut(s)	53, 239
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	170, 223
HpyCH4V	TGCA	2 cut(s)	85, 118
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	28, 158, 173
LpnPI	CCDG	3 cut(s)	62, 163, 263
MaeI	CTAG	2 cut(s)	209, 218
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	4 cut(s)	110, 140, 141, 185
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	32, 267
MmeI	TCCRAC	2 cut(s)	166, 240
MnlI	CCTC	6 cut(s)	39, 63, 73, 125, 149, 180
MseI	TTAA	2 cut(s)	8, 340
MslI	CAYNNNNRTG	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	253
NlaIII	CATG	3 cut(s)	28, 158, 173
NlaIV	GGNNCC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	8, 340
SatI	GCNGC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	7 cut(s)	84, 124, 182, 191, 219, 247, 255
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	2 cut(s)	32, 267
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	2 cut(s)	209, 218
TasI	AATT	2 cut(s)	32, 267
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	8, 340
Tru9I	TTAA	2 cut(s)	8, 340
TscAI	CASTG	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	2 cut(s)	209, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.