Rh2DG078700

PCI domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002448
Physical Location & Seq
Forward (+)
6074960 .. 6078428
3469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG078700.1

Sequence Viewer

Length: 876 bp
ATGGTTTATGAAATCAGGGTTCTAGCTGAGAGGGCTGATAAGGAATTGGCGACGAATGGGAAATCCCCGGAGAAGTTGAAGGGAGCTGGCTCTTTCCTTATGAAAGTATTTGGGGTTCTTGCTGGTAAAGGCCCAAAACGTGTAGGAGCATTATACGTGACTTGCCAGTTGTTTAAAGTTTACTTTAAGCTTGGTACGGTTCACCTTTGTCGCAGTGTGATAAGGAGTATTGAAACTGCACGTATATTTGATTTTGAGGAATTCCCCAAGAGAGATAAGGTTACCTATATGTATTATACAGGCCGTCTAGAGGTTTTCAATGAAAACTTTCCTGCTGCTGATGATAAATTGTCCTATGCCTTGAAGCATTGCAACCCTCGGAATGAAGCAAATATAAGGATGATATTGAAATATTTGATACCTGTCAAGCTTTCAATTGGCATCATACCAACCGATTGGCTTCTGCAAAAGTATAACTTGGTGGAGTATAGCAATGTTGTGCAAGCTCTAAGAAGAGGTGACCTCCGACTTCTTCGGCATGCTCTTCAAGAGCACGAAGACAGGTTCTTGAGATCTGGCGTATATCTCGTCCTAGAGAAACTAGAACTTCAGGTCTATCAGAGATTGTTGAAAAAAATTTACATTATCCAAAAGCAAAAGGACCCGAGCAAAGCTCACCAGCTGAAGTTGGAAGTAATTGTCAAAGCATTGAAATGGCTTGAAATGGACATTGATGTGGATGAGGTGGAGTGCATAATGGCAATACTAATATACAAAAGTCTGGTAAAGGGATACTTTGCACACAAGAGTAAAGTTGTGGTTTTAAGCAAGCAAGATCCTTTCCCCAAGTTAAATGGAAAGCCTGTCAATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PCI

Protein Analysis

291

Amino Acids

33.68

Weight (kDa)

9.57

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 182 - 277 3.2e-07 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 830
AcsI RAATTY 2 cut(s) 260, 636
AcuI CTGAAG 2 cut(s) 593, 704
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 139
AluBI AGCT 7 cut(s) 26, 86, 190, 430, 506, 674, 682
AluI AGCT 7 cut(s) 26, 86, 190, 430, 506, 674, 682
Alw21I GWGCWC 1 cut(s) 555
AlwI GGATC 1 cut(s) 830
Ama87I CYCGRG 1 cut(s) 664
AoxI GGCC 2 cut(s) 130, 301
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 260, 636
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 131, 661
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 3 cut(s) 194, 530, 668
AvaI CYCGRG 1 cut(s) 664
AvaII GGWCC 1 cut(s) 661
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 288
BciVI GTATCC 1 cut(s) 785
BcnI CCSGG 1 cut(s) 68
BfaI CTAG 4 cut(s) 23, 308, 593, 602
BfuI GTATCC 1 cut(s) 785
BglII AGATCT 1 cut(s) 572
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 664
BmgT120I GGNCC 2 cut(s) 131, 661
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 4 cut(s) 507, 539, 658, 690
BpuEI CTTGAG 1 cut(s) 589
BpuMI CCSGG 1 cut(s) 68
BsaAI YACGTR 2 cut(s) 157, 242
BsaJI CCNNGG 2 cut(s) 66, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 367, 499
BseDI CCNNGG 2 cut(s) 66, 377
BseGI GGATG 2 cut(s) 405, 745
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 2 cut(s) 367, 499
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 2 cut(s) 132, 303
BsiHKAI GWGCWC 1 cut(s) 555
BsiHKCI CYCGRG 1 cut(s) 664
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 310
BsnI GGCC 2 cut(s) 132, 303
BsoBI CYCGRG 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 2 cut(s) 572, 835
BspANI GGCC 2 cut(s) 132, 303
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 663
BspPI GGATC 1 cut(s) 830
BspQI GCTCTTC 1 cut(s) 549
BsrDI GCAATG 2 cut(s) 367, 499
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 66, 377
BssMI GATC 2 cut(s) 572, 835
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 508, 549
BstBAI YACGTR 2 cut(s) 157, 242
BstC8I GCNNGC 4 cut(s) 88, 504, 540, 830
BstDEI CTNAG 2 cut(s) 27, 509
BstEII GGTNACC 2 cut(s) 280, 518
BstF5I GGATG 2 cut(s) 405, 745
BstKTI GATC 2 cut(s) 575, 838
BstMBI GATC 2 cut(s) 572, 835
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 542
BstPI GGTNACC 2 cut(s) 280, 518
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 2 cut(s) 572, 835
BstXI CCANNNNNNTGG 1 cut(s) 456
BstYI RGATCY 2 cut(s) 572, 835
BsuI GTATCC 1 cut(s) 785
BsuRI GGCC 2 cut(s) 132, 303
BtsCI GGATG 2 cut(s) 405, 745
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 4 cut(s) 88, 504, 540, 830
Cfr13I GGNCC 2 cut(s) 131, 661
Csp6I GTAC 1 cut(s) 195
CviAII CATG 1 cut(s) 539
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 2 cut(s) 27, 509
DpnI GATC 2 cut(s) 574, 837
DpnII GATC 2 cut(s) 572, 835
DraI TTTAAA 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 508, 549
EarI CTCTTC 2 cut(s) 508, 549
Eco47I GGWCC 1 cut(s) 661
Eco57I CTGAAG 2 cut(s) 593, 704
Eco88I CYCGRG 1 cut(s) 664
Eco91I GGTNACC 2 cut(s) 280, 518
EcoO109I RGGNCCY 1 cut(s) 661
EcoO65I GGTNACC 2 cut(s) 280, 518
EcoRI GAATTC 1 cut(s) 260
FaeI CATG 1 cut(s) 542
FalI AAGNNNNNCTT 4 cut(s) 461, 493, 779, 811
FatI CATG 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 2 cut(s) 412, 752
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 4 cut(s) 23, 308, 593, 602
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 2 cut(s) 132, 303
HapII CCGG 1 cut(s) 68
Hin1II CATG 1 cut(s) 542
HindIII AAGCTT 2 cut(s) 188, 428
HpaII CCGG 1 cut(s) 68
HphI GGTGA 3 cut(s) 194, 530, 668
Hpy166II GTNNAC 2 cut(s) 181, 202
Hpy188I TCNGA 3 cut(s) 381, 527, 621
Hpy188III TCNNGA 3 cut(s) 308, 548, 568
Hpy8I GTNNAC 2 cut(s) 181, 202
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 3 cut(s) 139, 156, 241
HpyCH4V TGCA 6 cut(s) 239, 372, 466, 502, 753, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 27, 509
HpySE526I ACGT 3 cut(s) 139, 156, 241
Hsp92II CATG 1 cut(s) 542
Kzo9I GATC 2 cut(s) 572, 835
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 2 cut(s) 83, 146
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 450
MaeI CTAG 4 cut(s) 23, 308, 593, 602
MaeII ACGT 3 cut(s) 139, 156, 241
MaeIII GTNAC 3 cut(s) 157, 280, 518
MalI GATC 2 cut(s) 574, 837
MboI GATC 2 cut(s) 572, 835
MboII GAAGA 4 cut(s) 524, 525, 536, 569
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 2 cut(s) 572, 835
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 7 cut(s) 44, 260, 347, 435, 636, 696, 868
MmeI TCCRAC 2 cut(s) 550, 669
MnlI CCTC 7 cut(s) 24, 250, 304, 387, 509, 533, 736
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 4 cut(s) 174, 186, 824, 851
MslI CAYNNNNRTG 2 cut(s) 712, 734
MspA1I CMGCKG 1 cut(s) 682
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 68
NdeII GATC 2 cut(s) 572, 835
NlaIII CATG 1 cut(s) 542
NlaIV GGNNCC 1 cut(s) 663
NmuCI GTSAC 2 cut(s) 157, 518
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PciSI GCTCTTC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 337
Ppu21I YACGTR 2 cut(s) 157, 242
PpuMI RGGWCCY 1 cut(s) 661
Psp5II RGGWCCY 1 cut(s) 661
PspEI GGTNACC 2 cut(s) 280, 518
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 2 cut(s) 131, 661
PspPPI RGGWCCY 1 cut(s) 661
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PsuI RGATCY 2 cut(s) 572, 835
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
RseI CAYNNNNRTG 2 cut(s) 712, 734
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 4 cut(s) 174, 186, 824, 851
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 572, 835
Sau96I GGNCC 2 cut(s) 131, 661
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 1 cut(s) 450
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 2 cut(s) 712, 734
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
SphI GCATGC 1 cut(s) 542
Sse9I AATT 7 cut(s) 44, 260, 347, 435, 636, 696, 868
SspI AATATT 1 cut(s) 413
SspMI CTAG 4 cut(s) 23, 308, 593, 602
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 3 cut(s) 142, 159, 244
TasI AATT 7 cut(s) 44, 260, 347, 435, 636, 696, 868
Tru1I TTAA 4 cut(s) 174, 186, 824, 851
Tru9I TTAA 4 cut(s) 174, 186, 824, 851
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 157, 518
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 157, 518
TspDTI ATGAA 4 cut(s) 24, 116, 336, 399
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 661
XapI RAATTY 2 cut(s) 260, 636
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 4 cut(s) 23, 308, 593, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.