Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002448

Physical Location & Seq

Genomic Coordinates Reverse (-)

46884603 .. 46892900

Gene Structure 8298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003300

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCCATTAAGAATTGTGTTTCTCATGAACAAATTTGATGATGAGAGGTATAGAAATGTTTTGCGAGCTCTAAGAAGAGGCGACCTCCGACTTCTTCGGCATGCTTTTCAAGAGCATGAAGACAGGTTCTTAAGGTTTTCTGTATATCTTGTCCTAGAGAAGCTAGAACTTCAGGTGTATCAGAGATTGTTGGAAAAAAAAAAAATTATAATTTCTCTGAAGATTCAATTCATGATGATGCTATCTTCATTGTGCAGTTATATTATCCAAAAGCAGAAGGACCCAAGCAAAGTGGAGGGCATAATGGCGATGCTAATATACAAAAGTCTGTGTATTGGTACACAGAGGTGGGGTGCATGGTGGACATTACTAGACCTTTATCAGGCCGATGCTTTCCAATCATTGTATAGAAATGTTGTGCAAGCTCTAAGAAGAGGCGACCTCCGACTTCTTCGGCATGCTTTTCAAGAGCATGAAGACAGGTTTGCCGTATATCTTGTCCTAGAGAAGCTAGAACTTCAGGTCTATCAGAGATTATTGAAAAAAGATTTATATTATCCAAAAGCAGAAGGACCCAAGCAAAGCTCACCAGCTGAAGTTGGTAGTAATTGTCAAAGCATTGAAATGGTCATTGATGTGGATGAGGTGGATGGCATAATGGCGATGCTAATATACAAAAGTCTGGGTCATAAAGAATGGCTTGCAGAGGTTCAATTTCTTGGTGTGGTAGATCACCCAAATCTATCAAAGCTTCTAGGATATTGCTCTATAGATGGAGAAAGAGGGATCCAACGGCTATTGGTGGTAGGGACATATGGATATGGTGCCCCAGAGTATGTCGAAACAGGCCATCTTTCCATCCATAGTGGCTTATGGAGTTTTGGTGTTGTGCTGTATGAGATCCTTACTGGGAGGCGTGTCTTAGAAAGACACTGGCCAACAGCGGAGCAGAAGCTTCTTTATTGGGTTAGACAGTACCCTGCAGACAGTAAAAAGTTCAGCATGATAATAGATCCACTCCTAAGAGACCAGTATTCTATTAATGCAGCTCGGAAAATTGCCAAGTTGGCAGATAGCTGCCTGAACAAGAATGCAAAAGGCCGGCCAACAATGAATCAGGTGGCAAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

44.0

Weight (kDa)

9.31

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	268 - 375	6.5e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	274 - 376	1.7e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19560 AT2G19560
fragaria_vesca	FvH4_1g07290
malus_domestica	MD02G1077700.v1.1 MD15G1206300.v1.1 MD15G1352000.v1.1
prunus_persica	Prupe.7G211100_v2.0.a1
pyrus_communis	pycom02g06170 pycom02g06180 pycom15g18270 pycom15g18280
rosa_chinensis	RchiOBHm_Chr2g0093221 RchiOBHm_Chr7g0206721 RchiOBHm_Chr7g0207111 RchiOBHm_Chr7g0207281 RchiOBHm_Chr7g0230831
rosa_laevigata	RLG00000003298 RLG00000003300 RLG00000016379
rosa_multiflora	Rmu_sc0003724.1_g000013 Rmu_sc0010104.1_g000002 Rmu_sc0032537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148400 Rroxscaffold_3G00251220
rosa_rugosa	Rorug01G0015100 Rorug02G0033600 Rorug02G0033600
rosa_samantha	Rh2AG079800 Rh2BG080700 Rh2CG083000 Rh2DG078700 Rh7AG229900 Rh7AG230000 Rh7AG230600 Rh7AG230700 Rh7AG414800 Rh7CG245200 Rh7CG246600 Rh7CG433500
rosa_wichuraiana	Rw2G006720 Rw7G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	824
AciI	CCGC	1 cut(s)	944
AclWI	GGATC	4 cut(s)	781, 794, 895, 1007
AcoI	YGGCCR	2 cut(s)	935, 1103
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	4 cut(s)	155, 239, 503, 615
AfaI	GTAC	2 cut(s)	340, 977
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	6 cut(s)	110, 227, 467, 541, 623, 713
AleI	CACNNNNGTG	1 cut(s)	346
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	1020
AlwI	GGATC	4 cut(s)	781, 794, 895, 1007
AoxI	GGCC	5 cut(s)	384, 847, 935, 1099, 1103
ApeKI	GCWGC	2 cut(s)	1046, 1077
ApoI	RAATTY	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	1041
AspS9I	GGNCC	2 cut(s)	280, 572
AsuHPI	GGTGA	2 cut(s)	579, 725
AvaII	GGWCC	2 cut(s)	280, 572
BaeGI	GKGCMC	1 cut(s)	829
BalI	TGGCCA	1 cut(s)	937
BamHI	GGATCC	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	70
BbsI	GAAGAC	2 cut(s)	126, 483
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	1058, 1064
BccI	CCATC	4 cut(s)	644, 767, 858, 866
BceAI	ACGGC	2 cut(s)	473, 809
BcoDI	GTCTC	1 cut(s)	1020
BfaI	CTAG	6 cut(s)	155, 164, 371, 503, 512, 755
BfmI	CTRYAG	2 cut(s)	768, 981
BfrI	CTTAAG	1 cut(s)	130
BglI	GCCNNNNNGGC	1 cut(s)	1067
BglII	AGATCT	1 cut(s)	1127
BisI	GCNGC	2 cut(s)	1047, 1078
BlsI	GCNGC	2 cut(s)	1048, 1079
Bme18I	GGWCC	2 cut(s)	280, 572
BmgT120I	GGNCC	2 cut(s)	280, 572
BmiI	GGNNCC	4 cut(s)	282, 574, 788, 826
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	4 cut(s)	228, 300, 379, 654
BmuI	ACTGGG	1 cut(s)	918
BpiI	GAAGAC	2 cut(s)	126, 483
BplI	GAGNNNNNCTC	4 cut(s)	69, 101, 426, 458
BsaI	GGTCTC	1 cut(s)	1020
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	1101
Bse1I	ACTGG	3 cut(s)	913, 938, 1030
BseGI	GGATG	3 cut(s)	646, 655, 858
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseNI	ACTGG	3 cut(s)	913, 938, 1030
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	2 cut(s)	1058, 1064
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	5 cut(s)	386, 849, 937, 1101, 1105
BshNI	GGYRCC	1 cut(s)	824
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	1102
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	1020
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	5 cut(s)	386, 849, 937, 1101, 1105
Bso31I	GGTCTC	1 cut(s)	1020
Bsp1286I	GDGCHC	2 cut(s)	70, 829
Bsp143I	GATC	5 cut(s)	730, 786, 900, 1012, 1127
BspACI	CCGC	1 cut(s)	944
BspANI	GGCC	5 cut(s)	386, 849, 937, 1101, 1105
BspHI	TCATGA	2 cut(s)	24, 231
BspLI	GGNNCC	4 cut(s)	282, 574, 788, 826
BspMAI	CTGCAG	1 cut(s)	985
BspPI	GGATC	4 cut(s)	781, 794, 895, 1007
BspT107I	GGYRCC	1 cut(s)	824
BspTI	CTTAAG	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	1020
BsrFI	RCCGGY	1 cut(s)	1101
BsrI	ACTGG	3 cut(s)	913, 938, 1030
BssAI	RCCGGY	1 cut(s)	1101
BssMI	GATC	5 cut(s)	730, 786, 900, 1012, 1127
Bst4CI	ACNGT	2 cut(s)	975, 989
Bst6I	CTCTTC	2 cut(s)	70, 427
BstAFI	CTTAAG	1 cut(s)	130
BstC8I	GCNNGC	6 cut(s)	66, 102, 423, 459, 702, 1103
BstDEI	CTNAG	4 cut(s)	71, 428, 922, 1022
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	646, 655, 858
BstKTI	GATC	5 cut(s)	733, 789, 903, 1015, 1130
BstMAI	GTCTC	1 cut(s)	1020
BstMBI	GATC	5 cut(s)	730, 786, 900, 1012, 1127
BstMWI	GCNNNNNNNGC	1 cut(s)	1067
BstNSI	RCATGY	2 cut(s)	104, 461
BstSFI	CTRYAG	2 cut(s)	768, 981
BstSLI	GKGCMC	1 cut(s)	829
BstV1I	GCAGC	2 cut(s)	1058, 1064
BstV2I	GAAGAC	2 cut(s)	126, 483
BstX2I	RGATCY	4 cut(s)	786, 900, 1012, 1127
BstYI	RGATCY	4 cut(s)	786, 900, 1012, 1127
BsuRI	GGCC	5 cut(s)	386, 849, 937, 1101, 1105
BtgZI	GCGATG	2 cut(s)	323, 677
BtsCI	GGATG	3 cut(s)	646, 655, 858
BtsIMutI	CAGTG	1 cut(s)	931
Cac8I	GCNNGC	6 cut(s)	66, 102, 423, 459, 702, 1103
CciI	TCATGA	2 cut(s)	24, 231
Cfr10I	RCCGGY	1 cut(s)	1101
Cfr13I	GGNCC	2 cut(s)	280, 572
Csp6I	GTAC	2 cut(s)	339, 976
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	8 cut(s)	25, 101, 116, 232, 357, 458, 473, 1003
CviQI	GTAC	2 cut(s)	339, 976
DdeI	CTNAG	4 cut(s)	71, 428, 922, 1022
DpnI	GATC	5 cut(s)	732, 788, 902, 1014, 1129
DpnII	GATC	5 cut(s)	730, 786, 900, 1012, 1127
EaeI	YGGCCR	2 cut(s)	935, 1103
Eam1104I	CTCTTC	2 cut(s)	70, 427
EarI	CTCTTC	2 cut(s)	70, 427
Ecl136II	GAGCTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	1020
Eco47I	GGWCC	2 cut(s)	280, 572
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	4 cut(s)	155, 239, 503, 615
EcoICRI	GAGCTC	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO109I	RGGNCCY	2 cut(s)	280, 572
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	8 cut(s)	28, 104, 119, 235, 360, 461, 476, 1006
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	8 cut(s)	24, 100, 115, 231, 356, 457, 472, 1002
FauNDI	CATATG	1 cut(s)	814
Fnu4HI	GCNGC	2 cut(s)	1047, 1078
FokI	GGATG	3 cut(s)	653, 662, 845
FriOI	GRGCYC	1 cut(s)	70
FseI	GGCCGGCC	1 cut(s)	1105
Fsp4HI	GCNGC	2 cut(s)	1047, 1078
FspBI	CTAG	6 cut(s)	155, 164, 371, 503, 512, 755
GluI	GCNGC	2 cut(s)	1047, 1078
HaeIII	GGCC	5 cut(s)	386, 849, 937, 1101, 1105
HapII	CCGG	1 cut(s)	1102
Hin1II	CATG	8 cut(s)	28, 104, 119, 235, 360, 461, 476, 1006
HindIII	AAGCTT	2 cut(s)	749, 953
HinfI	GANTC	2 cut(s)	223, 1114
HpaII	CCGG	1 cut(s)	1102
HphI	GGTGA	2 cut(s)	579, 725
Hpy166II	GTNNAC	2 cut(s)	341, 363
Hpy188I	TCNGA	6 cut(s)	89, 183, 219, 446, 531, 1053
Hpy188III	TCNNGA	5 cut(s)	25, 110, 232, 467, 1131
Hpy8I	GTNNAC	2 cut(s)	341, 363
HpyAV	CCTTC	2 cut(s)	271, 563
HpyCH4III	ACNGT	2 cut(s)	975, 989
HpyCH4V	TGCA	7 cut(s)	255, 356, 421, 704, 983, 1046, 1094
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1067
HpyF3I	CTNAG	4 cut(s)	71, 428, 922, 1022
Hsp92II	CATG	8 cut(s)	28, 104, 119, 235, 360, 461, 476, 1006
KroI	GCCGGC	1 cut(s)	1101
KroNI	GCCGGC	1 cut(s)	1103
Kzo9I	GATC	5 cut(s)	730, 786, 900, 1012, 1127
LmnI	GCTCC	1 cut(s)	946
Lsp1109I	GCAGC	2 cut(s)	1058, 1064
LweI	GCATC	4 cut(s)	228, 300, 379, 654
MaeI	CTAG	6 cut(s)	155, 164, 371, 503, 512, 755
MalI	GATC	5 cut(s)	732, 788, 902, 1014, 1129
MboI	GATC	5 cut(s)	730, 786, 900, 1012, 1127
MboII	GAAGA	8 cut(s)	86, 87, 131, 232, 237, 443, 444, 488
MflI	RGATCY	4 cut(s)	786, 900, 1012, 1127
MhlI	GDGCHC	2 cut(s)	70, 829
MlsI	TGGCCA	1 cut(s)	937
MluCI	AATT	8 cut(s)	12, 32, 204, 210, 227, 607, 713, 1056
MluNI	TGGCCA	1 cut(s)	937
MmeI	TCCRAC	4 cut(s)	112, 171, 469, 814
Mox20I	TGGCCA	1 cut(s)	937
MroNI	GCCGGC	1 cut(s)	1101
MscI	TGGCCA	1 cut(s)	937
MseI	TTAA	3 cut(s)	8, 131, 1041
MslI	CAYNNNNRTG	4 cut(s)	236, 346, 623, 635
Msp20I	TGGCCA	1 cut(s)	937
MspA1I	CMGCKG	2 cut(s)	593, 944
MspCI	CTTAAG	1 cut(s)	130
MspI	CCGG	1 cut(s)	1102
Mva1269I	GAATGC	1 cut(s)	1096
MwoI	GCNNNNNNNGC	1 cut(s)	1067
NaeI	GCCGGC	1 cut(s)	1103
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	5 cut(s)	730, 786, 900, 1012, 1127
NgoMIV	GCCGGC	1 cut(s)	1101
NlaIII	CATG	8 cut(s)	28, 104, 119, 235, 360, 461, 476, 1006
NlaIV	GGNNCC	4 cut(s)	282, 574, 788, 826
NspI	RCATGY	2 cut(s)	104, 461
OliI	CACNNNNGTG	1 cut(s)	346
PaeI	GCATGC	2 cut(s)	104, 461
PagI	TCATGA	2 cut(s)	24, 231
PctI	GAATGC	1 cut(s)	1096
PdiI	GCCGGC	1 cut(s)	1103
PfeI	GAWTC	2 cut(s)	223, 1114
PkrI	GCNGC	2 cut(s)	1048, 1079
PpuMI	RGGWCCY	2 cut(s)	280, 572
PshBI	ATTAAT	1 cut(s)	1041
PsiI	TTATAA	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	70
Psp5II	RGGWCCY	2 cut(s)	280, 572
PspN4I	GGNNCC	4 cut(s)	282, 574, 788, 826
PspPI	GGNCC	2 cut(s)	280, 572
PspPPI	RGGWCCY	2 cut(s)	280, 572
PstI	CTGCAG	1 cut(s)	985
PsuI	RGATCY	4 cut(s)	786, 900, 1012, 1127
PvuII	CAGCTG	1 cut(s)	593
RigI	GGCCGGCC	1 cut(s)	1105
RsaI	GTAC	2 cut(s)	340, 977
RsaNI	GTAC	2 cut(s)	339, 976
RseI	CAYNNNNRTG	4 cut(s)	236, 346, 623, 635
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	3 cut(s)	8, 131, 1041
SatI	GCNGC	2 cut(s)	1047, 1078
Sau3AI	GATC	5 cut(s)	730, 786, 900, 1012, 1127
Sau96I	GGNCC	2 cut(s)	280, 572
SduI	GDGCHC	2 cut(s)	70, 829
SfaNI	GCATC	4 cut(s)	228, 300, 379, 654
SfcI	CTRYAG	2 cut(s)	768, 981
SinI	GGWCC	2 cut(s)	280, 572
SmiMI	CAYNNNNRTG	4 cut(s)	236, 346, 623, 635
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SphI	GCATGC	2 cut(s)	104, 461
Sse9I	AATT	8 cut(s)	12, 32, 204, 210, 227, 607, 713, 1056
SsiI	CCGC	1 cut(s)	944
SspMI	CTAG	6 cut(s)	155, 164, 371, 503, 512, 755
SstI	GAGCTC	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	975, 989
TaqI	TCGA	1 cut(s)	840
TasI	AATT	8 cut(s)	12, 32, 204, 210, 227, 607, 713, 1056
TfiI	GAWTC	2 cut(s)	223, 1114
Tru1I	TTAA	3 cut(s)	8, 131, 1041
Tru9I	TTAA	3 cut(s)	8, 131, 1041
TscAI	CASTG	1 cut(s)	938
TseI	GCWGC	2 cut(s)	1046, 1077
TspDTI	ATGAA	6 cut(s)	41, 132, 220, 237, 489, 1127
TspRI	CASTG	1 cut(s)	938
Vha464I	CTTAAG	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	280, 572
VspI	ATTAAT	1 cut(s)	1041
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	2 cut(s)	104, 461
XspI	CTAG	6 cut(s)	155, 164, 371, 503, 512, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.