Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002448

Physical Location & Seq

Genomic Coordinates Reverse (-)

46866721 .. 46869176

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTATGAAATTCTTGGGTTTTGCTCCGAGCTGCAGTCAAAATCAAAGTGTATTGGTACACAGAGGTGGGGTGCAAGGTGGACATTACTAGGCCTTTATCAGGCCGATGCTTTCCAATCATTGTATAGAAATGTTGTGCAAGCTCTAAGAAGAGGCGACCTCCGACTTCTTCGGCATGCTTTTCAAGAGCATGAAGACAGGTTCTTTAGGTTTGCCGTATATCTTGTCCTAGAGAAGCTAGAACTTCAGGTCTATCAGAGATTATTGAAAAAAGATTTATATTATCCAAAAGCAGAAGGACCCAAGCAAAGCTCACCAGCTGAAGTTGGTAGTAATTGTCAAAGCATTGAAATGGTCATTGATGTGGATGAGGTGGATGGCATAATGGCGATGCTAATATACAAAAGTCTGGTAAAGGGATACTTTGCACACAAGAGTAAAGTTGTGGTTTTAAGCAAGCACCGATATCCAACTCTTATGCAAGTCCATAACAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

167

Amino Acids

19.37

Weight (kDa)

9.32

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19560 AT2G19560
fragaria_vesca	FvH4_1g07290
malus_domestica	MD02G1077700.v1.1 MD15G1206300.v1.1 MD15G1352000.v1.1
prunus_persica	Prupe.7G211100_v2.0.a1
pyrus_communis	pycom02g06170 pycom02g06180 pycom15g18270 pycom15g18280
rosa_chinensis	RchiOBHm_Chr2g0093221 RchiOBHm_Chr7g0206721 RchiOBHm_Chr7g0207111 RchiOBHm_Chr7g0207281 RchiOBHm_Chr7g0230831
rosa_laevigata	RLG00000003298 RLG00000003300 RLG00000016379
rosa_multiflora	Rmu_sc0003724.1_g000013 Rmu_sc0010104.1_g000002 Rmu_sc0032537.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148400 Rroxscaffold_3G00251220
rosa_rugosa	Rorug01G0015100 Rorug02G0033600 Rorug02G0033600
rosa_samantha	Rh2AG079800 Rh2BG080700 Rh2CG083000 Rh2DG078700 Rh7AG229900 Rh7AG230000 Rh7AG230600 Rh7AG230700 Rh7AG414800 Rh7CG245200 Rh7CG246600 Rh7CG433500
rosa_wichuraiana	Rw2G006720 Rw7G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	2 cut(s)	230, 342
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	185, 268, 350
AleI	CACNNNNGTG	1 cut(s)	64
AluBI	AGCT	5 cut(s)	31, 143, 238, 312, 320
AluI	AGCT	5 cut(s)	31, 143, 238, 312, 320
AoxI	GGCC	2 cut(s)	91, 102
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	89, 230, 239
BfmI	CTRYAG	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	2 cut(s)	97, 381
BpiI	GAAGAC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	373, 382
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	93, 104
BslI	CCNNNNNNNGG	1 cut(s)	100
BsnI	GGCC	2 cut(s)	93, 104
BspANI	GGCC	2 cut(s)	93, 104
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	141, 177, 458
BstDEI	CTNAG	1 cut(s)	146
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	373, 382
BstNSI	RCATGY	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	93, 104
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	373, 382
Cac8I	GCNNGC	3 cut(s)	141, 177, 458
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	2 cut(s)	176, 191
CviJI	RGCY	7 cut(s)	31, 93, 104, 143, 238, 312, 320
CviKI_1	RGCY	7 cut(s)	31, 93, 104, 143, 238, 312, 320
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	230, 342
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRV	GATATC	1 cut(s)	467
FaeI	CATG	2 cut(s)	179, 194
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	2 cut(s)	175, 190
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	2 cut(s)	380, 389
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	3 cut(s)	89, 230, 239
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	93, 104
Hin1II	CATG	2 cut(s)	179, 194
HphI	GGTGA	1 cut(s)	306
Hpy166II	GTNNAC	2 cut(s)	59, 81
Hpy188I	TCNGA	3 cut(s)	28, 164, 258
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	2 cut(s)	59, 81
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	5 cut(s)	34, 74, 139, 428, 481
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	179, 194
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	5 cut(s)	86, 184, 233, 330, 395
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	97, 381
MaeI	CTAG	3 cut(s)	89, 230, 239
MboII	GAAGA	3 cut(s)	161, 162, 206
MluCI	AATT	2 cut(s)	9, 334
MmeI	TCCRAC	2 cut(s)	187, 494
MnlI	CCTC	4 cut(s)	57, 146, 170, 364
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	3 cut(s)	64, 350, 362
MspA1I	CMGCKG	1 cut(s)	320
NlaIII	CATG	2 cut(s)	179, 194
NlaIV	GGNNCC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	179
OliI	CACNNNNGTG	1 cut(s)	64
PaeI	GCATGC	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	3 cut(s)	64, 350, 362
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	97, 381
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	3 cut(s)	64, 350, 362
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	9, 334
SseBI	AGGCCT	1 cut(s)	93
SspMI	CTAG	3 cut(s)	89, 230, 239
StuI	AGGCCT	1 cut(s)	93
TasI	AATT	2 cut(s)	9, 334
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	21, 207
VpaK11BI	GGWCC	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	3 cut(s)	89, 230, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.