Prupe.7G211100_v2.0.a1

PCI domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0002448
Physical Location & Seq
Reverse (-)
19312963 .. 19316696
3734 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G211100.1

Sequence Viewer

Length: 1242 bp
ATGGCGTTCTTGAGCATGGGAGAGGCCCACAGGAGAATCAACGACTACCTCAACCGCTTCTCCGACGCCGTTTCGGCCCAGGACGGGGCTTCCCTCAAGCAGCTCCTCTCTCTCTCATCCAACAACCCCGCTATCCTCTCTCTCGCCGATGCCCTCAACGTCTTCCAGGACGCCAATAGATTGATTAAACAGTCCGATAACGACACTCAATTTGGTGAAATTCTGGTTCATCTGTTCCGTGCTTTTCAGAGTTACCGAGTCGGGAGCTTCATTGATTCTTACCAAGCCTTTGAAAAATCTGCAAATGCTTTTATTCAGGAGTTTAGGAACTGGGACACAGCCTGGGCTTTGCAAGCATTGTATGTTATAGCCTATGAAATTAGGGTTCTAGCCGAGAGGGCTGATAAGGAATTGGCTTCAAATGGAAAGTCCCCGGAGAAGTTGAAGGGAGCTGGTTCTTTCCTTATGAAAGTTTTTGGGGTTCTTGCTGGAAAAGGACCAAAACGTGTTGGAGCATTATACGTGACTTGCCAGTTGTTTAAAGTTTATTTTAAGCTTGGTACAGTTCACCTTTGCCGCAGTGTGATAAGGAGCATTGAAACTGCAAGAATATTTGATTTTGAGGAATTCCCTAAGAGAGATAAGGTCACTTACATGTATTATACAGGCCGCCTAGAAGTTTTCAATGAAAATTTCCCTGCTGCCGATCATAAATTGTCGTATGCCTTGAGGCATTGCAATCCACAGAGTGAAGCAAATATAAGGATGATATTGAAATATTTGATACCCGTGAAGCTTTCAATCGGCATCTTACCAAATGATTGGCTTCTGGAAAAGTATAACCTGGTTGAGTATAAGAATGTTGTACAAGCTCTAAAAAGAGGTGATCTCCGACTTCTTCGGCATGCTCTTGAAGAACACGAAGATCGGTTCTTGAGATCAGGTGTATATCTTGTCCTAGAGAAGCTAGAACTCCAAGTCTACCAGAGATTAATAAAGAAAATTTACATTATCCAAAAGCAGAAGGACCCGATCAAAGCTCATCAGCTGAAATTAGAAGTAATTGTCAAAGCATTGAAATGGCTTGAGATATCCATGGATCTCGATGAGGTGGAGTGCATAGTGGCCATATTAATATACAAAAATCTTGTGAAGGGGTACTTTGCACACAAGAGCAAAGTTGTAGTTTTAAGCAAGCAAGATCCTTTCCCTAAATTGAATGGAAAGCCTGTCAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PCI

Protein Analysis

414

Amino Acids

47.45

Weight (kDa)

9.36

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 981
AciI CCGC 4 cut(s) 55, 129, 577, 670
AclWI GGATC 2 cut(s) 1107, 1196
AcoI YGGCCR 1 cut(s) 1125
AcsI RAATTY 4 cut(s) 219, 626, 691, 1002
AcyI GRCGYC 2 cut(s) 66, 171
AdeI CACNNNGTG 1 cut(s) 749
AfaI GTAC 3 cut(s) 562, 867, 1160
AfiI CCNNNNNNNGG 2 cut(s) 84, 85
AflIII ACRYGT 2 cut(s) 505, 654
AjnI CCWGG 4 cut(s) 78, 165, 341, 843
AluBI AGCT 9 cut(s) 103, 267, 452, 556, 796, 872, 967, 1040, 1048
AluI AGCT 9 cut(s) 103, 267, 452, 556, 796, 872, 967, 1040, 1048
AlwI GGATC 2 cut(s) 1107, 1196
AoxI GGCC 4 cut(s) 24, 75, 667, 1125
ApeKI GCWGC 2 cut(s) 100, 701
ApoI RAATTY 4 cut(s) 219, 626, 691, 1002
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 413, 445
AseI ATTAAT 2 cut(s) 992, 1133
AspS9I GGNCC 4 cut(s) 25, 76, 497, 1027
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 3 cut(s) 227, 560, 896
AvaII GGWCC 2 cut(s) 497, 1027
BalI TGGCCA 1 cut(s) 1127
BbsI GAAGAC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 112, 688
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 4 cut(s) 80, 167, 343, 845
BcnI CCSGG 1 cut(s) 434
BfaI CTAG 4 cut(s) 389, 674, 959, 968
BglI GCCNNNNNGGC 2 cut(s) 74, 398
BisI GCNGC 4 cut(s) 101, 577, 670, 702
BlsI GCNGC 4 cut(s) 102, 578, 671, 703
Bme1390I CCNGG 5 cut(s) 80, 167, 343, 434, 845
Bme18I GGWCC 2 cut(s) 497, 1027
BmgT120I GGNCC 4 cut(s) 25, 76, 497, 1027
BmiI GGNNCC 1 cut(s) 1029
BmrFI CCNGG 5 cut(s) 80, 167, 343, 434, 845
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 139, 816
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 873, 905
BpuEI CTTGAG 5 cut(s) 31, 80, 748, 955, 1106
BpuMI CCSGG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 2 cut(s) 66, 171
BsaJI CCNNGG 4 cut(s) 78, 342, 432, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 85
Bse1I ACTGG 2 cut(s) 335, 532
Bse3DI GCAATG 1 cut(s) 733
BseBI CCWGG 4 cut(s) 80, 167, 343, 845
BseDI CCNNGG 4 cut(s) 78, 342, 432, 1095
BseGI GGATG 2 cut(s) 116, 771
BseLI CCNNNNNNNGG 2 cut(s) 84, 85
BseMI GCAATG 1 cut(s) 733
BseNI ACTGG 2 cut(s) 335, 532
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 112, 688
BshFI GGCC 4 cut(s) 26, 77, 669, 1127
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 347, 415
BslI CCNNNNNNNGG 2 cut(s) 84, 85
BsmFI GGGAC 2 cut(s) 347, 415
BsnI GGCC 4 cut(s) 26, 77, 669, 1127
Bsp1407I TGTACA 1 cut(s) 865
Bsp143I GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
Bsp19I CCATGG 1 cut(s) 1095
BspACI CCGC 4 cut(s) 55, 129, 577, 670
BspANI GGCC 4 cut(s) 26, 77, 669, 1127
BspLI GGNNCC 1 cut(s) 1029
BspPI GGATC 2 cut(s) 1107, 1196
BsrDI GCAATG 1 cut(s) 733
BsrGI TGTACA 1 cut(s) 865
BsrI ACTGG 2 cut(s) 335, 532
BssECI CCNNGG 4 cut(s) 78, 342, 432, 1095
BssMI GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
BssNI GRCGYC 2 cut(s) 66, 171
BssT1I CCWWGG 1 cut(s) 1095
Bst2UI CCWGG 4 cut(s) 80, 167, 343, 845
Bst4CI ACNGT 2 cut(s) 192, 565
BstACI GRCGYC 2 cut(s) 66, 171
BstAUI TGTACA 1 cut(s) 865
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 3 cut(s) 354, 906, 1196
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 1 cut(s) 1095
BstF5I GGATG 2 cut(s) 116, 771
BstKTI GATC 7 cut(s) 709, 889, 928, 941, 1035, 1102, 1204
BstMBI GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
BstMWI GCNNNNNNNGC 3 cut(s) 74, 353, 398
BstNI CCWGG 4 cut(s) 80, 167, 343, 845
BstNSI RCATGY 2 cut(s) 658, 908
BstSCI CCNGG 5 cut(s) 78, 165, 341, 432, 843
BstV1I GCAGC 2 cut(s) 112, 688
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 2 cut(s) 1099, 1201
BstXI CCANNNNNNTGG 1 cut(s) 822
BstYI RGATCY 2 cut(s) 1099, 1201
BsuRI GGCC 4 cut(s) 26, 77, 669, 1127
BtgI CCRYGG 1 cut(s) 1095
BtsCI GGATG 2 cut(s) 116, 771
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 3 cut(s) 354, 906, 1196
Cfr13I GGNCC 4 cut(s) 25, 76, 497, 1027
CseI GACGC 2 cut(s) 74, 179
CsiI ACCWGGT 1 cut(s) 843
Csp6I GTAC 3 cut(s) 561, 866, 1159
CviAII CATG 4 cut(s) 16, 655, 905, 1096
CviQI GTAC 3 cut(s) 561, 866, 1159
DdeI CTNAG 1 cut(s) 633
DpnI GATC 7 cut(s) 708, 888, 927, 940, 1034, 1101, 1203
DpnII GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
DraI TTTAAA 1 cut(s) 541
DraIII CACNNNGTG 1 cut(s) 749
EaeI YGGCCR 1 cut(s) 1125
Eco130I CCWWGG 1 cut(s) 1095
Eco32I GATATC 1 cut(s) 1092
Eco47I GGWCC 2 cut(s) 497, 1027
EcoO109I RGGNCCY 1 cut(s) 1027
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 4 cut(s) 78, 165, 341, 843
EcoRV GATATC 1 cut(s) 1092
EcoT14I CCWWGG 1 cut(s) 1095
ErhI CCWWGG 1 cut(s) 1095
FaeI CATG 4 cut(s) 19, 658, 908, 1099
FalI AAGNNNNNCTT 2 cut(s) 1145, 1177
FaqI GGGAC 2 cut(s) 347, 415
FatI CATG 4 cut(s) 15, 654, 904, 1095
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 4 cut(s) 101, 577, 670, 702
FokI GGATG 2 cut(s) 103, 778
Fsp4HI GCNGC 4 cut(s) 101, 577, 670, 702
FspBI CTAG 4 cut(s) 389, 674, 959, 968
GluI GCNGC 4 cut(s) 101, 577, 670, 702
HaeIII GGCC 4 cut(s) 26, 77, 669, 1127
HapII CCGG 1 cut(s) 434
HgaI GACGC 2 cut(s) 74, 179
Hin1I GRCGYC 2 cut(s) 66, 171
Hin1II CATG 4 cut(s) 19, 658, 908, 1099
HindIII AAGCTT 2 cut(s) 554, 794
HinfI GANTC 3 cut(s) 36, 258, 275
HpaII CCGG 1 cut(s) 434
HphI GGTGA 3 cut(s) 227, 560, 896
Hpy166II GTNNAC 2 cut(s) 568, 982
Hpy188I TCNGA 4 cut(s) 64, 196, 249, 893
Hpy188III TCNNGA 7 cut(s) 10, 262, 317, 830, 911, 934, 1103
Hpy8I GTNNAC 2 cut(s) 568, 982
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 3 cut(s) 439, 1018, 1147
HpyCH4III ACNGT 2 cut(s) 192, 565
HpyCH4IV ACGT 3 cut(s) 159, 505, 522
HpyCH4V TGCA 6 cut(s) 302, 352, 605, 738, 1119, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 353, 398
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 3 cut(s) 159, 505, 522
Hsp92I GRCGYC 2 cut(s) 66, 171
Hsp92II CATG 4 cut(s) 19, 658, 908, 1099
Kzo9I GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
LmnI GCTCC 5 cut(s) 108, 264, 449, 512, 591
Lsp1109I GCAGC 2 cut(s) 112, 688
LweI GCATC 2 cut(s) 139, 816
MabI ACCWGGT 1 cut(s) 843
MaeI CTAG 4 cut(s) 389, 674, 959, 968
MaeII ACGT 3 cut(s) 159, 505, 522
MaeIII GTNAC 3 cut(s) 251, 523, 646
MalI GATC 7 cut(s) 708, 888, 927, 940, 1034, 1101, 1203
MboI GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
MboII GAAGA 4 cut(s) 154, 890, 926, 935
MflI RGATCY 2 cut(s) 1099, 1201
MlsI TGGCCA 1 cut(s) 1127
MluNI TGGCCA 1 cut(s) 1127
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 4 cut(s) 87, 144, 490, 916
Mox20I TGGCCA 1 cut(s) 1127
MscI TGGCCA 1 cut(s) 1127
MseI TTAA 6 cut(s) 186, 540, 552, 992, 1133, 1190
MslI CAYNNNNRTG 2 cut(s) 653, 1078
Msp20I TGGCCA 1 cut(s) 1127
MspA1I CMGCKG 1 cut(s) 1048
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 5 cut(s) 80, 167, 343, 434, 845
MvaI CCWGG 4 cut(s) 80, 167, 343, 845
MwoI GCNNNNNNNGC 3 cut(s) 74, 353, 398
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 1 cut(s) 1095
NdeII GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
NlaIII CATG 4 cut(s) 19, 658, 908, 1099
NlaIV GGNNCC 1 cut(s) 1029
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 2 cut(s) 523, 646
NspI RCATGY 2 cut(s) 658, 908
PaeI GCATGC 1 cut(s) 908
PciI ACATGT 1 cut(s) 654
PfeI GAWTC 2 cut(s) 36, 275
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 4 cut(s) 102, 578, 671, 703
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 1027
PscI ACATGT 1 cut(s) 654
PshBI ATTAAT 2 cut(s) 992, 1133
Psp5II RGGWCCY 1 cut(s) 1027
Psp6I CCWGG 4 cut(s) 78, 165, 341, 843
PspGI CCWGG 4 cut(s) 78, 165, 341, 843
PspN4I GGNNCC 1 cut(s) 1029
PspPI GGNCC 4 cut(s) 25, 76, 497, 1027
PspPPI RGGWCCY 1 cut(s) 1027
PsuI RGATCY 2 cut(s) 1099, 1201
PvuII CAGCTG 1 cut(s) 1048
RsaI GTAC 3 cut(s) 562, 867, 1160
RsaNI GTAC 3 cut(s) 561, 866, 1159
RseI CAYNNNNRTG 2 cut(s) 653, 1078
SaqAI TTAA 6 cut(s) 186, 540, 552, 992, 1133, 1190
SatI GCNGC 4 cut(s) 101, 577, 670, 702
Sau3AI GATC 7 cut(s) 706, 886, 925, 938, 1032, 1099, 1201
Sau96I GGNCC 4 cut(s) 25, 76, 497, 1027
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 5 cut(s) 80, 167, 343, 434, 845
SexAI ACCWGGT 1 cut(s) 843
SfaNI GCATC 2 cut(s) 139, 816
SinI GGWCC 2 cut(s) 497, 1027
SmiMI CAYNNNNRTG 2 cut(s) 653, 1078
SmlI CTYRAG 5 cut(s) 10, 95, 727, 934, 1085
SmoI CTYRAG 5 cut(s) 10, 95, 727, 934, 1085
SphI GCATGC 1 cut(s) 908
SsiI CCGC 4 cut(s) 55, 129, 577, 670
SspI AATATT 2 cut(s) 612, 779
SspMI CTAG 4 cut(s) 389, 674, 959, 968
StyD4I CCNGG 5 cut(s) 78, 165, 341, 432, 843
StyI CCWWGG 1 cut(s) 1095
TaaI ACNGT 2 cut(s) 192, 565
TaiI ACGT 3 cut(s) 162, 508, 525
TaqI TCGA 1 cut(s) 1104
TatI WGTACW 1 cut(s) 865
TauI GCSGC 2 cut(s) 579, 672
TfiI GAWTC 2 cut(s) 36, 275
Tru1I TTAA 6 cut(s) 186, 540, 552, 992, 1133, 1190
Tru9I TTAA 6 cut(s) 186, 540, 552, 992, 1133, 1190
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 2 cut(s) 523, 646
TseI GCWGC 2 cut(s) 100, 701
Tsp45I GTSAC 2 cut(s) 523, 646
TspDTI ATGAA 6 cut(s) 218, 259, 390, 482, 702, 1227
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 497, 1027
VspI ATTAAT 2 cut(s) 992, 1133
XapI RAATTY 4 cut(s) 219, 626, 691, 1002
XceI RCATGY 2 cut(s) 658, 908
XmiI GTMKAC 1 cut(s) 981
XspI CTAG 4 cut(s) 389, 674, 959, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.