PCI domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Nup192 | PF11894 | 26 - 1606 | 4.6e-103 | Nuclear pore complex scaffold, nucleoporins 186/192/205 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 521, 2384, 2453, 2985 |
| AarI | CACCTGC | 1 cut(s) | 1187 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 224 |
| AatII | GACGTC | 1 cut(s) | 228 |
| Acc36I | ACCTGC | 2 cut(s) | 1187, 5071 |
| Acc65I | GGTACC | 1 cut(s) | 938 |
| AccB1I | GGYRCC | 4 cut(s) | 938, 1625, 1799, 5489 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2515 |
| AccI | GTMKAC | 1 cut(s) | 4852 |
| AccII | CGCG | 2 cut(s) | 23, 3123 |
| AccIII | TCCGGA | 1 cut(s) | 2340 |
| AciI | CCGC | 8 cut(s) | 23, 50, 137, 558, 679, 1258, 3705, 4568 |
| AclI | AACGTT | 4 cut(s) | 574, 1074, 3669, 4575 |
| AcoI | YGGCCR | 2 cut(s) | 2804, 4868 |
| AcuI | CTGAAG | 6 cut(s) | 465, 1514, 2061, 2162, 2238, 5011 |
| AcyI | GRCGYC | 3 cut(s) | 5, 225, 2497 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 633, 859, 997, 1693, 2464, 2515, 3305, 5434 |
| AflII | CTTAAG | 2 cut(s) | 2053, 4036 |
| AflIII | ACRYGT | 2 cut(s) | 3008, 5404 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3529, 5081 |
| AhlI | ACTAGT | 2 cut(s) | 2750, 5395 |
| AjnI | CCWGG | 9 cut(s) | 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3165, 3197 |
| Alw21I | GWGCWC | 9 cut(s) | 84, 163, 601, 1565, 1924, 1965, 2606, 4426, 4519 |
| Alw44I | GTGCAC | 2 cut(s) | 1920, 4422 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 836, 2515 |
| Ama87I | CYCGRG | 4 cut(s) | 627, 858, 4431, 5558 |
| Aor13HI | TCCGGA | 1 cut(s) | 2340 |
| ApaLI | GTGCAC | 2 cut(s) | 1920, 4422 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1076, 3369, 3627, 4621, 5417 |
| Asp718I | GGTACC | 1 cut(s) | 938 |
| AspLEI | GCGC | 4 cut(s) | 40, 348, 2070, 4453 |
| AsuC2I | CCSGG | 6 cut(s) | 628, 629, 859, 860, 993, 3386 |
| AsuII | TTCGAA | 4 cut(s) | 97, 3258, 5017, 5605 |
| AvaI | CYCGRG | 4 cut(s) | 627, 858, 4431, 5558 |
| AvaII | GGWCC | 4 cut(s) | 154, 1322, 1410, 1435 |
| BaeGI | GKGCMC | 2 cut(s) | 1924, 4426 |
| BalI | TGGCCA | 1 cut(s) | 4870 |
| BamHI | GGATCC | 1 cut(s) | 2998 |
| BanI | GGYRCC | 4 cut(s) | 938, 1625, 1799, 5489 |
| BanII | GRGCYC | 6 cut(s) | 65, 84, 163, 363, 1965, 4519 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1285, 1317, 1474, 1506 |
| BauI | CACGAG | 2 cut(s) | 713, 4938 |
| BbsI | GAAGAC | 7 cut(s) | 776, 2168, 4295, 4803, 5410, 5480, 5643 |
| Bbv12I | GWGCWC | 9 cut(s) | 84, 163, 601, 1565, 1924, 1965, 2606, 4426, 4519 |
| BbvCI | CCTCAGC | 3 cut(s) | 4064, 5033, 5193 |
| BceAI | ACGGC | 3 cut(s) | 133, 4061, 5099 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 77, 111 |
| BciT130I | CCWGG | 9 cut(s) | 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349 |
| BciVI | GTATCC | 1 cut(s) | 3382 |
| BclI | TGATCA | 6 cut(s) | 427, 1173, 2101, 2242, 3271, 4780 |
| BcnI | CCSGG | 6 cut(s) | 628, 629, 859, 860, 993, 3386 |
| BcuI | ACTAGT | 2 cut(s) | 2750, 5395 |
| BfmI | CTRYAG | 2 cut(s) | 1110, 5078 |
| BfoI | RGCGCY | 1 cut(s) | 41 |
| BfrI | CTTAAG | 2 cut(s) | 2053, 4036 |
| BfuAI | ACCTGC | 2 cut(s) | 1187, 5071 |
| BfuI | GTATCC | 1 cut(s) | 3382 |
| BglII | AGATCT | 5 cut(s) | 382, 2916, 3726, 4156, 4379 |
| Bme18I | GGWCC | 4 cut(s) | 154, 1322, 1410, 1435 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3529, 5081 |
| BmeT110I | CYCGRG | 4 cut(s) | 627, 858, 4431, 5558 |
| BmiI | GGNNCC | 7 cut(s) | 940, 1377, 1627, 1801, 3000, 3325, 5491 |
| BpiI | GAAGAC | 7 cut(s) | 776, 2168, 4295, 4803, 5410, 5480, 5643 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 52, 84, 66, 98, 4994, 5026 |
| BpmI | CTGGAG | 8 cut(s) | 101, 1025, 1449, 1882, 2264, 4151, 4481, 4533 |
| Bpu10I | CCTNAGC | 5 cut(s) | 4064, 4518, 5033, 5193, 5423 |
| Bpu14I | TTCGAA | 4 cut(s) | 97, 3258, 5017, 5605 |
| BpuEI | CTTGAG | 9 cut(s) | 147, 1892, 2517, 2933, 3285, 3601, 3801, 4254, 5609 |
| BpuMI | CCSGG | 6 cut(s) | 628, 629, 859, 860, 993, 3386 |
| Bsa29I | ATCGAT | 2 cut(s) | 3514, 4768 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2453, 2541, 4161 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 225, 2497 |
| BsaI | GGTCTC | 1 cut(s) | 5089 |
| BsaWI | WCCGGW | 2 cut(s) | 1636, 2340 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1626, 1656, 4506, 4536 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 633, 859, 997, 1693, 2464, 2515, 3305, 5434 |
| Bse1I | ACTGG | 5 cut(s) | 118, 1042, 1081, 1736, 3268 |
| Bse3DI | GCAATG | 3 cut(s) | 1242, 1402, 5637 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2453, 2541, 4161 |
| BseAI | TCCGGA | 1 cut(s) | 2340 |
| BseBI | CCWGG | 9 cut(s) | 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349 |
| BseCI | ATCGAT | 2 cut(s) | 3514, 4768 |
| BseJI | GATNNNNATC | 3 cut(s) | 2453, 2541, 4161 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 633, 859, 997, 1693, 2464, 2515, 3305, 5434 |
| BseMI | GCAATG | 3 cut(s) | 1242, 1402, 5637 |
| BseNI | ACTGG | 5 cut(s) | 118, 1042, 1081, 1736, 3268 |
| BseRI | GAGGAG | 4 cut(s) | 8, 116, 3288, 4052 |
| BseSI | GKGCMC | 2 cut(s) | 1924, 4426 |
| BsgI | GTGCAG | 2 cut(s) | 849, 1920 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 3123 |
| BshNI | GGYRCC | 4 cut(s) | 938, 1625, 1799, 5489 |
| BshVI | ATCGAT | 2 cut(s) | 3514, 4768 |
| BsiHKAI | GWGCWC | 9 cut(s) | 84, 163, 601, 1565, 1924, 1965, 2606, 4426, 4519 |
| BsiHKCI | CYCGRG | 4 cut(s) | 627, 858, 4431, 5558 |
| BsiSI | CCGG | 7 cut(s) | 628, 859, 906, 993, 1637, 2341, 3386 |
| BslFI | GGGAC | 7 cut(s) | 106, 447, 760, 841, 1594, 2838, 4776 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 633, 859, 997, 1693, 2464, 2515, 3305, 5434 |
| BsmBI | CGTCTC | 2 cut(s) | 1342, 4036 |
| BsmFI | GGGAC | 7 cut(s) | 106, 447, 760, 841, 1594, 2838, 4776 |
| Bso31I | GGTCTC | 1 cut(s) | 5089 |
| BsoBI | CYCGRG | 4 cut(s) | 627, 858, 4431, 5558 |
| Bsp119I | TTCGAA | 4 cut(s) | 97, 3258, 5017, 5605 |
| Bsp13I | TCCGGA | 1 cut(s) | 2340 |
| Bsp1407I | TGTACA | 3 cut(s) | 961, 1149, 2650 |
| Bsp19I | CCATGG | 1 cut(s) | 1929 |
| BspACI | CCGC | 8 cut(s) | 23, 50, 137, 558, 679, 1258, 3705, 4568 |
| BspDI | ATCGAT | 2 cut(s) | 3514, 4768 |
| BspEI | TCCGGA | 1 cut(s) | 2340 |
| BspFNI | CGCG | 2 cut(s) | 23, 3123 |
| BspHI | TCATGA | 5 cut(s) | 886, 2616, 2959, 4333, 5654 |
| BspLI | GGNNCC | 7 cut(s) | 940, 1377, 1627, 1801, 3000, 3325, 5491 |
| BspMAI | CTGCAG | 2 cut(s) | 1114, 5082 |
| BspMI | ACCTGC | 2 cut(s) | 1187, 5071 |
| BspQI | GCTCTTC | 1 cut(s) | 3669 |
| BspT104I | TTCGAA | 4 cut(s) | 97, 3258, 5017, 5605 |
| BspT107I | GGYRCC | 4 cut(s) | 938, 1625, 1799, 5489 |
| BspTI | CTTAAG | 2 cut(s) | 2053, 4036 |
| BspTNI | GGTCTC | 1 cut(s) | 5089 |
| BsrDI | GCAATG | 3 cut(s) | 1242, 1402, 5637 |
| BsrGI | TGTACA | 3 cut(s) | 961, 1149, 2650 |
| BsrI | ACTGG | 5 cut(s) | 118, 1042, 1081, 1736, 3268 |
| BssNAI | GTATAC | 1 cut(s) | 4853 |
| BssNI | GRCGYC | 3 cut(s) | 5, 225, 2497 |
| BssSI | CACGAG | 2 cut(s) | 713, 4938 |
| BssT1I | CCWWGG | 2 cut(s) | 1485, 1929 |
| Bst1107I | GTATAC | 1 cut(s) | 4853 |
| Bst2BI | CACGAG | 2 cut(s) | 713, 4938 |
| Bst2UI | CCWGG | 9 cut(s) | 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349 |
| Bst6I | CTCTTC | 7 cut(s) | 319, 373, 1910, 2214, 3335, 3669, 4872 |
| BstACI | GRCGYC | 3 cut(s) | 5, 225, 2497 |
| BstAFI | CTTAAG | 2 cut(s) | 2053, 4036 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1670, 4196 |
| BstAUI | TGTACA | 3 cut(s) | 961, 1149, 2650 |
| BstBI | TTCGAA | 4 cut(s) | 97, 3258, 5017, 5605 |
| BstDSI | CCRYGG | 2 cut(s) | 1890, 1929 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1691 |
| BstFNI | CGCG | 2 cut(s) | 23, 3123 |
| BstH2I | RGCGCY | 1 cut(s) | 41 |
| BstHHI | GCGC | 4 cut(s) | 40, 348, 2070, 4453 |
| BstNI | CCWGG | 9 cut(s) | 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349 |
| BstNSI | RCATGY | 9 cut(s) | 1246, 2175, 3012, 3320, 3870, 3936, 4928, 5095, 5408 |
| BstSFI | CTRYAG | 2 cut(s) | 1110, 5078 |
| BstSLI | GKGCMC | 2 cut(s) | 1924, 4426 |
| BstUI | CGCG | 2 cut(s) | 23, 3123 |
| BstV2I | GAAGAC | 7 cut(s) | 776, 2168, 4295, 4803, 5410, 5480, 5643 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4502 |
| BstZ17I | GTATAC | 1 cut(s) | 4853 |
| Bsu15I | ATCGAT | 2 cut(s) | 3514, 4768 |
| BsuI | GTATCC | 1 cut(s) | 3382 |
| BsuTUI | ATCGAT | 2 cut(s) | 3514, 4768 |
| BtgI | CCRYGG | 2 cut(s) | 1890, 1929 |
| BtgZI | GCGATG | 3 cut(s) | 3035, 4606, 5348 |
| BtsI | GCAGTG | 3 cut(s) | 649, 2606, 4055 |
| BtsIMutI | CAGTG | 6 cut(s) | 369, 649, 2214, 2606, 3860, 4055 |
| BveI | ACCTGC | 2 cut(s) | 1187, 5071 |
| CaiI | CAGNNNCTG | 2 cut(s) | 836, 2515 |
| CciI | TCATGA | 5 cut(s) | 886, 2616, 2959, 4333, 5654 |
| CfoI | GCGC | 4 cut(s) | 40, 348, 2070, 4453 |
| Cfr9I | CCCGGG | 2 cut(s) | 627, 858 |
| ClaI | ATCGAT | 2 cut(s) | 3514, 4768 |
| CpoI | CGGWCCG | 1 cut(s) | 154 |
| CseI | GACGC | 5 cut(s) | 13, 827, 2486, 3112, 3519 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 189, 224 |
| CspI | CGGWCCG | 1 cut(s) | 154 |
| DraI | TTTAAA | 1 cut(s) | 1603 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 224 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3529, 5081 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 224 |
| EaeI | YGGCCR | 2 cut(s) | 2804, 4868 |
| Eam1104I | CTCTTC | 7 cut(s) | 319, 373, 1910, 2214, 3335, 3669, 4872 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3529, 5081 |
| EarI | CTCTTC | 7 cut(s) | 319, 373, 1910, 2214, 3335, 3669, 4872 |
| EciI | GGCGGA | 1 cut(s) | 126 |
| Ecl136II | GAGCTC | 4 cut(s) | 82, 161, 1963, 4517 |
| Eco130I | CCWWGG | 2 cut(s) | 1485, 1929 |
| Eco24I | GRGCYC | 6 cut(s) | 65, 84, 163, 363, 1965, 4519 |
| Eco31I | GGTCTC | 1 cut(s) | 5089 |
| Eco32I | GATATC | 2 cut(s) | 4105, 4633 |
| Eco47I | GGWCC | 4 cut(s) | 154, 1322, 1410, 1435 |
| Eco53kI | GAGCTC | 4 cut(s) | 82, 161, 1963, 4517 |
| Eco57I | CTGAAG | 6 cut(s) | 465, 1514, 2061, 2162, 2238, 5011 |
| Eco88I | CYCGRG | 4 cut(s) | 627, 858, 4431, 5558 |
| EcoICRI | GAGCTC | 4 cut(s) | 82, 161, 1963, 4517 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1691 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3115 |
| EcoRII | CCWGG | 9 cut(s) | 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347 |
| EcoRV | GATATC | 2 cut(s) | 4105, 4633 |
| EcoT14I | CCWWGG | 2 cut(s) | 1485, 1929 |
| EcoT22I | ATGCAT | 3 cut(s) | 868, 3872, 4926 |
| EcoT38I | GRGCYC | 6 cut(s) | 65, 84, 163, 363, 1965, 4519 |
| ErhI | CCWWGG | 2 cut(s) | 1485, 1929 |
| Esp3I | CGTCTC | 2 cut(s) | 1342, 4036 |
| FaqI | GGGAC | 7 cut(s) | 106, 447, 760, 841, 1594, 2838, 4776 |
| FauI | CCCGC | 2 cut(s) | 57, 551 |
| FauNDI | CATATG | 4 cut(s) | 2190, 3696, 4089, 4873 |
| FbaI | TGATCA | 6 cut(s) | 427, 1173, 2101, 2242, 3271, 4780 |
| FblI | GTMKAC | 1 cut(s) | 4852 |
| FriOI | GRGCYC | 6 cut(s) | 65, 84, 163, 363, 1965, 4519 |
| GlaI | GCGC | 4 cut(s) | 39, 347, 2069, 4452 |
| GsuI | CTGGAG | 8 cut(s) | 101, 1025, 1449, 1882, 2264, 4151, 4481, 4533 |
| HaeII | RGCGCY | 1 cut(s) | 41 |
| HapII | CCGG | 7 cut(s) | 628, 859, 906, 993, 1637, 2341, 3386 |
| HgaI | GACGC | 5 cut(s) | 13, 827, 2486, 3112, 3519 |
| HhaI | GCGC | 4 cut(s) | 40, 348, 2070, 4453 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 225, 2497 |
| Hin6I | GCGC | 4 cut(s) | 38, 346, 2068, 4451 |
| HinP1I | GCGC | 4 cut(s) | 38, 346, 2068, 4451 |
| HincII | GTYRAC | 2 cut(s) | 3702, 4573 |
| HindII | GTYRAC | 2 cut(s) | 3702, 4573 |
| HindIII | AAGCTT | 3 cut(s) | 1760, 2927, 3401 |
| HpaI | GTTAAC | 1 cut(s) | 3702 |
| HpaII | CCGG | 7 cut(s) | 628, 859, 906, 993, 1637, 2341, 3386 |
| Hpy99I | CGWCG | 2 cut(s) | 115, 154 |
| HpyCH4IV | ACGT | 5 cut(s) | 225, 574, 1074, 3669, 4575 |
| HpySE526I | ACGT | 5 cut(s) | 225, 574, 1074, 3669, 4575 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 225, 2497 |
| HspAI | GCGC | 4 cut(s) | 38, 346, 2068, 4451 |
| Kpn2I | TCCGGA | 1 cut(s) | 2340 |
| KpnI | GGTACC | 1 cut(s) | 942 |
| Ksp22I | TGATCA | 6 cut(s) | 427, 1173, 2101, 2242, 3271, 4780 |
| KspAI | GTTAAC | 1 cut(s) | 3702 |
| LguI | GCTCTTC | 1 cut(s) | 3669 |
| MaeII | ACGT | 5 cut(s) | 225, 574, 1074, 3669, 4575 |
| MlsI | TGGCCA | 1 cut(s) | 4870 |
| MluNI | TGGCCA | 1 cut(s) | 4870 |
| MlyI | GAGTC | 4 cut(s) | 2209, 4430, 4945, 5550 |
| MmeI | TCCRAC | 5 cut(s) | 132, 1246, 1538, 1879, 3333 |
| Mox20I | TGGCCA | 1 cut(s) | 4870 |
| Mph1103I | ATGCAT | 3 cut(s) | 868, 3872, 4926 |
| MroI | TCCGGA | 1 cut(s) | 2340 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1076, 3369, 3627, 4621, 5417 |
| MscI | TGGCCA | 1 cut(s) | 4870 |
| MslI | CAYNNNNRTG | 4 cut(s) | 3007, 3183, 3865, 4500 |
| Msp20I | TGGCCA | 1 cut(s) | 4870 |
| MspA1I | CMGCKG | 3 cut(s) | 52, 395, 548 |
| MspCI | CTTAAG | 2 cut(s) | 2053, 4036 |
| MspI | CCGG | 7 cut(s) | 628, 859, 906, 993, 1637, 2341, 3386 |
| MssI | GTTTAAAC | 1 cut(s) | 1603 |
| MvaI | CCWGG | 9 cut(s) | 221, 554, 1262, 2367, 2763, 3113, 3709, 3906, 4349 |
| MvnI | CGCG | 2 cut(s) | 23, 3123 |
| NciI | CCSGG | 6 cut(s) | 628, 629, 859, 860, 993, 3386 |
| NcoI | CCATGG | 1 cut(s) | 1929 |
| NdeI | CATATG | 4 cut(s) | 2190, 3696, 4089, 4873 |
| NlaIV | GGNNCC | 7 cut(s) | 940, 1377, 1627, 1801, 3000, 3325, 5491 |
| NmeAIII | GCCGAG | 1 cut(s) | 5260 |
| NmuCI | GTSAC | 4 cut(s) | 4883, 4940, 5056, 5614 |
| NsiI | ATGCAT | 3 cut(s) | 868, 3872, 4926 |
| NspI | RCATGY | 9 cut(s) | 1246, 2175, 3012, 3320, 3870, 3936, 4928, 5095, 5408 |
| NspV | TTCGAA | 4 cut(s) | 97, 3258, 5017, 5605 |
| PaeI | GCATGC | 2 cut(s) | 1246, 4928 |
| PaeR7I | CTCGAG | 2 cut(s) | 4431, 5558 |
| PagI | TCATGA | 5 cut(s) | 886, 2616, 2959, 4333, 5654 |
| PaqCI | CACCTGC | 1 cut(s) | 1187 |
| PciI | ACATGT | 2 cut(s) | 3008, 5404 |
| PciSI | GCTCTTC | 1 cut(s) | 3669 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 27 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1076, 3369, 3627, 4621, 5417 |
| PflFI | GACNNNGTC | 1 cut(s) | 1211 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2515 |
| PleI | GAGTC | 4 cut(s) | 2208, 4430, 4945, 5550 |
| PmeI | GTTTAAAC | 1 cut(s) | 1603 |
| PpsI | GAGTC | 4 cut(s) | 2208, 4430, 4945, 5550 |
| PscI | ACATGT | 2 cut(s) | 3008, 5404 |
| PsiI | TTATAA | 4 cut(s) | 521, 2384, 2453, 2985 |
| Psp124BI | GAGCTC | 4 cut(s) | 84, 163, 1965, 4519 |
| Psp1406I | AACGTT | 4 cut(s) | 574, 1074, 3669, 4575 |
| Psp6I | CCWGG | 9 cut(s) | 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347 |
| PspGI | CCWGG | 9 cut(s) | 219, 552, 1260, 2365, 2761, 3111, 3707, 3904, 4347 |
| PspN4I | GGNNCC | 7 cut(s) | 940, 1377, 1627, 1801, 3000, 3325, 5491 |
| PspXI | VCTCGAGB | 1 cut(s) | 5558 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2614, 2646 |
| PstI | CTGCAG | 2 cut(s) | 1114, 5082 |
| PstNI | CAGNNNCTG | 2 cut(s) | 836, 2515 |
| PsyI | GACNNNGTC | 1 cut(s) | 1211 |
| PvuII | CAGCTG | 2 cut(s) | 395, 548 |
| RseI | CAYNNNNRTG | 4 cut(s) | 3007, 3183, 3865, 4500 |
| Rsr2I | CGGWCCG | 1 cut(s) | 154 |
| RsrII | CGGWCCG | 1 cut(s) | 154 |
| SacI | GAGCTC | 4 cut(s) | 84, 163, 1965, 4519 |
| SapI | GCTCTTC | 1 cut(s) | 3669 |
| SchI | GAGTC | 4 cut(s) | 2209, 4430, 4945, 5550 |
| SfcI | CTRYAG | 2 cut(s) | 1110, 5078 |
| Sfr274I | CTCGAG | 2 cut(s) | 4431, 5558 |
| SfuI | TTCGAA | 4 cut(s) | 97, 3258, 5017, 5605 |
| SinI | GGWCC | 4 cut(s) | 154, 1322, 1410, 1435 |
| SlaI | CTCGAG | 2 cut(s) | 4431, 5558 |
| SmaI | CCCGGG | 2 cut(s) | 629, 860 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 3007, 3183, 3865, 4500 |
| SpeI | ACTAGT | 2 cut(s) | 2750, 5395 |
| SphI | GCATGC | 2 cut(s) | 1246, 4928 |
| SsiI | CCGC | 8 cut(s) | 23, 50, 137, 558, 679, 1258, 3705, 4568 |
| SspI | AATATT | 2 cut(s) | 2775, 4216 |
| SstI | GAGCTC | 4 cut(s) | 84, 163, 1965, 4519 |
| StyI | CCWWGG | 2 cut(s) | 1485, 1929 |
| TaiI | ACGT | 5 cut(s) | 228, 577, 1077, 3672, 4578 |
| TaqII | GACCGA | 2 cut(s) | 171, 4965 |
| TatI | WGTACW | 4 cut(s) | 961, 1149, 2650, 2767 |
| TscAI | CASTG | 6 cut(s) | 376, 656, 2221, 2606, 3867, 4062 |
| TseFI | GTSAC | 4 cut(s) | 4883, 4940, 5056, 5614 |
| Tsp45I | GTSAC | 4 cut(s) | 4883, 4940, 5056, 5614 |
| TspGWI | ACGGA | 2 cut(s) | 272, 3527 |
| TspMI | CCCGGG | 2 cut(s) | 627, 858 |
| TspRI | CASTG | 6 cut(s) | 376, 656, 2221, 2606, 3867, 4062 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1211 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2515 |
| Vha464I | CTTAAG | 2 cut(s) | 2053, 4036 |
| VneI | GTGCAC | 2 cut(s) | 1920, 4422 |
| VpaK11BI | GGWCC | 4 cut(s) | 154, 1322, 1410, 1435 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1691 |
| XbaI | TCTAGA | 2 cut(s) | 590, 2299 |
| XceI | RCATGY | 9 cut(s) | 1246, 2175, 3012, 3320, 3870, 3936, 4928, 5095, 5408 |
| XhoI | CTCGAG | 2 cut(s) | 4431, 5558 |
| XmaI | CCCGGG | 2 cut(s) | 627, 858 |
| XmiI | GTMKAC | 1 cut(s) | 4852 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1076, 3369, 3627, 4621, 5417 |
| ZraI | GACGTC | 1 cut(s) | 226 |
| Zsp2I | ATGCAT | 3 cut(s) | 868, 3872, 4926 |