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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 193 |
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 117 |
| AflIII | ACRYGT | 1 cut(s) | 222 |
| AgsI | TTSAA | 3 cut(s) | 96, 307, 343 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 343 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 2 cut(s) | 247, 370 |
| AluI | AGCT | 2 cut(s) | 247, 370 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 371 |
| AspLEI | GCGC | 3 cut(s) | 259, 270, 330 |
| AsuC2I | CCSGG | 2 cut(s) | 119, 131 |
| AsuHPI | GGTGA | 1 cut(s) | 367 |
| AsuII | TTCGAA | 1 cut(s) | 365 |
| BaeGI | GKGCMC | 1 cut(s) | 124 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BanII | GRGCYC | 1 cut(s) | 50 |
| BcnI | CCSGG | 2 cut(s) | 119, 131 |
| BfaI | CTAG | 1 cut(s) | 260 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 131 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 343 |
| BmiI | GGNNCC | 2 cut(s) | 123, 312 |
| BmrFI | CCNGG | 2 cut(s) | 119, 131 |
| BmsI | GCATC | 2 cut(s) | 174, 226 |
| Bpu10I | CCTNAGC | 1 cut(s) | 271 |
| Bpu14I | TTCGAA | 1 cut(s) | 365 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 2 cut(s) | 119, 131 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 1 cut(s) | 314 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 117 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseDI | CCNNGG | 1 cut(s) | 314 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 117 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 124 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiSI | CCGG | 2 cut(s) | 118, 131 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 117 |
| Bsp119I | TTCGAA | 1 cut(s) | 365 |
| Bsp1286I | GDGCHC | 2 cut(s) | 50, 124 |
| Bsp143I | GATC | 1 cut(s) | 228 |
| Bsp19I | CCATGG | 1 cut(s) | 314 |
| BspLI | GGNNCC | 2 cut(s) | 123, 312 |
| BspT104I | TTCGAA | 1 cut(s) | 365 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssECI | CCNNGG | 1 cut(s) | 314 |
| BssMI | GATC | 1 cut(s) | 228 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssT1I | CCWWGG | 1 cut(s) | 314 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstBI | TTCGAA | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 1 cut(s) | 271 |
| BstDSI | CCRYGG | 1 cut(s) | 314 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 3 cut(s) | 259, 270, 330 |
| BstKTI | GATC | 1 cut(s) | 231 |
| BstMBI | GATC | 1 cut(s) | 228 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 265 |
| BstNSI | RCATGY | 2 cut(s) | 167, 226 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 129 |
| BstSLI | GKGCMC | 1 cut(s) | 124 |
| BtgI | CCRYGG | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CfoI | GCGC | 3 cut(s) | 259, 270, 330 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CviAII | CATG | 6 cut(s) | 31, 164, 223, 299, 315, 387 |
| CviJI | RGCY | 3 cut(s) | 48, 247, 370 |
| CviKI_1 | RGCY | 3 cut(s) | 48, 247, 370 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 1 cut(s) | 271 |
| DpnI | GATC | 1 cut(s) | 230 |
| DpnII | GATC | 1 cut(s) | 228 |
| DriI | GACNNNNNGTC | 1 cut(s) | 343 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 343 |
| Eco130I | CCWWGG | 1 cut(s) | 314 |
| Eco24I | GRGCYC | 1 cut(s) | 50 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 1 cut(s) | 314 |
| EcoT38I | GRGCYC | 1 cut(s) | 50 |
| ErhI | CCWWGG | 1 cut(s) | 314 |
| FaeI | CATG | 6 cut(s) | 34, 167, 226, 302, 318, 390 |
| FatI | CATG | 6 cut(s) | 30, 163, 222, 298, 314, 386 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FriOI | GRGCYC | 1 cut(s) | 50 |
| FspBI | CTAG | 1 cut(s) | 260 |
| GlaI | GCGC | 3 cut(s) | 258, 269, 329 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HapII | CCGG | 2 cut(s) | 118, 131 |
| HhaI | GCGC | 3 cut(s) | 259, 270, 330 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 6 cut(s) | 34, 167, 226, 302, 318, 390 |
| Hin6I | GCGC | 3 cut(s) | 257, 268, 328 |
| HinP1I | GCGC | 3 cut(s) | 257, 268, 328 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HpaII | CCGG | 2 cut(s) | 118, 131 |
| HphI | GGTGA | 1 cut(s) | 367 |
| Hpy166II | GTNNAC | 1 cut(s) | 144 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 212 |
| Hpy8I | GTNNAC | 1 cut(s) | 144 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 1 cut(s) | 239 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 265 |
| HpyF3I | CTNAG | 1 cut(s) | 271 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 6 cut(s) | 34, 167, 226, 302, 318, 390 |
| HspAI | GCGC | 3 cut(s) | 257, 268, 328 |
| Kzo9I | GATC | 1 cut(s) | 228 |
| LpnPI | CCDG | 2 cut(s) | 131, 144 |
| LweI | GCATC | 2 cut(s) | 174, 226 |
| MaeI | CTAG | 1 cut(s) | 260 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 1 cut(s) | 230 |
| MboI | GATC | 1 cut(s) | 228 |
| MhlI | GDGCHC | 2 cut(s) | 50, 124 |
| MluCI | AATT | 2 cut(s) | 322, 361 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 3 cut(s) | 98, 302, 305 |
| MroXI | GAANNNNTTC | 1 cut(s) | 371 |
| MspI | CCGG | 2 cut(s) | 118, 131 |
| MspR9I | CCNGG | 2 cut(s) | 119, 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 265 |
| NciI | CCSGG | 2 cut(s) | 119, 131 |
| NcoI | CCATGG | 1 cut(s) | 314 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 1 cut(s) | 228 |
| NlaIII | CATG | 6 cut(s) | 34, 167, 226, 302, 318, 390 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 312 |
| NspI | RCATGY | 2 cut(s) | 167, 226 |
| NspV | TTCGAA | 1 cut(s) | 365 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PciI | ACATGT | 1 cut(s) | 222 |
| PdmI | GAANNNNTTC | 1 cut(s) | 371 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| PscI | ACATGT | 1 cut(s) | 222 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 312 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| Sau3AI | GATC | 1 cut(s) | 228 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 131 |
| SduI | GDGCHC | 2 cut(s) | 50, 124 |
| SetI | ASST | 8 cut(s) | 90, 127, 157, 193, 249, 312, 372, 380 |
| SfaNI | GCATC | 2 cut(s) | 174, 226 |
| SfuI | TTCGAA | 1 cut(s) | 365 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 2 cut(s) | 322, 361 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 1 cut(s) | 260 |
| StyD4I | CCNGG | 2 cut(s) | 117, 129 |
| StyI | CCWWGG | 1 cut(s) | 314 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TaqI | TCGA | 3 cut(s) | 21, 227, 365 |
| TasI | AATT | 2 cut(s) | 322, 361 |
| TatI | WGTACW | 1 cut(s) | 219 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 1 cut(s) | 24 |
| TspGWI | ACGGA | 1 cut(s) | 337 |
| XceI | RCATGY | 2 cut(s) | 167, 226 |
| XmnI | GAANNNNTTC | 1 cut(s) | 371 |
| XspI | CTAG | 1 cut(s) | 260 |
| ZraI | GACGTC | 1 cut(s) | 191 |