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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 262, 544 |
| AfaI | GTAC | 2 cut(s) | 37, 431 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 32 |
| AgsI | TTSAA | 3 cut(s) | 129, 349, 559 |
| AjnI | CCWGG | 1 cut(s) | 288 |
| AluBI | AGCT | 6 cut(s) | 54, 90, 107, 143, 338, 344 |
| AluI | AGCT | 6 cut(s) | 54, 90, 107, 143, 338, 344 |
| Alw21I | GWGCWC | 2 cut(s) | 46, 82 |
| Alw26I | GTCTC | 1 cut(s) | 475 |
| AoxI | GGCC | 1 cut(s) | 23 |
| ApeKI | GCWGC | 2 cut(s) | 170, 362 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 588 |
| BanII | GRGCYC | 1 cut(s) | 136 |
| BbsI | GAAGAC | 1 cut(s) | 456 |
| Bbv12I | GWGCWC | 2 cut(s) | 46, 82 |
| BbvI | GCAGC | 2 cut(s) | 182, 374 |
| BccI | CCATC | 1 cut(s) | 525 |
| BciT130I | CCWGG | 1 cut(s) | 290 |
| BciVI | GTATCC | 1 cut(s) | 286 |
| BcoDI | GTCTC | 1 cut(s) | 475 |
| BfaI | CTAG | 1 cut(s) | 521 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| BfuI | GTATCC | 1 cut(s) | 286 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 371 |
| BisI | GCNGC | 2 cut(s) | 171, 363 |
| BlsI | GCNGC | 2 cut(s) | 172, 364 |
| Bme1390I | CCNGG | 1 cut(s) | 290 |
| BmiI | GGNNCC | 1 cut(s) | 135 |
| BmrFI | CCNGG | 1 cut(s) | 290 |
| BmsI | GCATC | 1 cut(s) | 277 |
| BpiI | GAAGAC | 1 cut(s) | 456 |
| BpmI | CTGGAG | 1 cut(s) | 410 |
| Bpu10I | CCTNAGC | 1 cut(s) | 27 |
| BpuEI | CTTGAG | 3 cut(s) | 257, 323, 324 |
| BsaI | GGTCTC | 1 cut(s) | 475 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 64, 94 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 32 |
| Bse1I | ACTGG | 2 cut(s) | 232, 427 |
| BseBI | CCWGG | 1 cut(s) | 290 |
| BseGI | GGATG | 3 cut(s) | 189, 393, 421 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 32 |
| BseNI | ACTGG | 2 cut(s) | 232, 427 |
| BseXI | GCAGC | 2 cut(s) | 182, 374 |
| BsgI | GTGCAG | 2 cut(s) | 48, 84 |
| BshFI | GGCC | 1 cut(s) | 25 |
| BsiHKAI | GWGCWC | 2 cut(s) | 46, 82 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 32 |
| BsmAI | GTCTC | 1 cut(s) | 475 |
| BsnI | GGCC | 1 cut(s) | 25 |
| Bso31I | GGTCTC | 1 cut(s) | 475 |
| Bsp1286I | GDGCHC | 3 cut(s) | 46, 82, 136 |
| Bsp143I | GATC | 2 cut(s) | 95, 152 |
| BspACI | CCGC | 2 cut(s) | 262, 544 |
| BspANI | GGCC | 1 cut(s) | 25 |
| BspLI | GGNNCC | 1 cut(s) | 135 |
| BspMAI | CTGCAG | 1 cut(s) | 172 |
| BspTNI | GGTCTC | 1 cut(s) | 475 |
| BsrI | ACTGG | 2 cut(s) | 232, 427 |
| BssMI | GATC | 2 cut(s) | 95, 152 |
| Bst2UI | CCWGG | 1 cut(s) | 290 |
| Bst4CI | ACNGT | 1 cut(s) | 328 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 266, 336 |
| BstDEI | CTNAG | 1 cut(s) | 27 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 30 |
| BstF5I | GGATG | 3 cut(s) | 189, 393, 421 |
| BstKTI | GATC | 2 cut(s) | 98, 155 |
| BstMAI | GTCTC | 1 cut(s) | 475 |
| BstMBI | GATC | 2 cut(s) | 95, 152 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 77, 113, 140, 350, 359, 371, 380 |
| BstNI | CCWGG | 1 cut(s) | 290 |
| BstSCI | CCNGG | 1 cut(s) | 288 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstV1I | GCAGC | 2 cut(s) | 182, 374 |
| BstV2I | GAAGAC | 1 cut(s) | 456 |
| BsuI | GTATCC | 1 cut(s) | 286 |
| BsuRI | GGCC | 1 cut(s) | 25 |
| BtsCI | GGATG | 3 cut(s) | 189, 393, 421 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 266, 336 |
| Csp6I | GTAC | 2 cut(s) | 36, 430 |
| CviAII | CATG | 1 cut(s) | 57 |
| CviQI | GTAC | 2 cut(s) | 36, 430 |
| DdeI | CTNAG | 1 cut(s) | 27 |
| DpnI | GATC | 2 cut(s) | 97, 154 |
| DpnII | GATC | 2 cut(s) | 95, 152 |
| EciI | GGCGGA | 1 cut(s) | 251 |
| Eco147I | AGGCCT | 1 cut(s) | 25 |
| Eco24I | GRGCYC | 1 cut(s) | 136 |
| Eco31I | GGTCTC | 1 cut(s) | 475 |
| Eco32I | GATATC | 1 cut(s) | 239 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 30 |
| EcoRII | CCWGG | 1 cut(s) | 288 |
| EcoRV | GATATC | 1 cut(s) | 239 |
| EcoT38I | GRGCYC | 1 cut(s) | 136 |
| FaeI | CATG | 1 cut(s) | 60 |
| FaiI | YATR | 5 cut(s) | 58, 411, 413, 440, 537 |
| FatI | CATG | 1 cut(s) | 56 |
| FauNDI | CATATG | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 2 cut(s) | 171, 363 |
| FokI | GGATG | 3 cut(s) | 196, 380, 428 |
| FriOI | GRGCYC | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 2 cut(s) | 171, 363 |
| FspBI | CTAG | 1 cut(s) | 521 |
| GluI | GCNGC | 2 cut(s) | 171, 363 |
| GsuI | CTGGAG | 1 cut(s) | 410 |
| HaeIII | GGCC | 1 cut(s) | 25 |
| Hin1II | CATG | 1 cut(s) | 60 |
| HindIII | AAGCTT | 2 cut(s) | 141, 342 |
| HinfI | GANTC | 5 cut(s) | 285, 298, 403, 419, 503 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 583 |
| Hpy188III | TCNNGA | 7 cut(s) | 93, 234, 254, 302, 515, 569, 603 |
| HpyAV | CCTTC | 1 cut(s) | 453 |
| HpyCH4III | ACNGT | 1 cut(s) | 328 |
| HpyCH4IV | ACGT | 2 cut(s) | 318, 495 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 65, 101, 170 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 77, 113, 140, 350, 359, 371, 380 |
| HpyF3I | CTNAG | 1 cut(s) | 27 |
| HpySE526I | ACGT | 2 cut(s) | 318, 495 |
| Hsp92II | CATG | 1 cut(s) | 60 |
| Kzo9I | GATC | 2 cut(s) | 95, 152 |
| LmnI | GCTCC | 2 cut(s) | 85, 139 |
| Lsp1109I | GCAGC | 2 cut(s) | 182, 374 |
| LweI | GCATC | 1 cut(s) | 277 |
| MaeI | CTAG | 1 cut(s) | 521 |
| MaeII | ACGT | 2 cut(s) | 318, 495 |
| MaeIII | GTNAC | 1 cut(s) | 188 |
| MalI | GATC | 2 cut(s) | 97, 154 |
| MboI | GATC | 2 cut(s) | 95, 152 |
| MboII | GAAGA | 2 cut(s) | 458, 461 |
| MfeI | CAATTG | 1 cut(s) | 215 |
| MhlI | GDGCHC | 3 cut(s) | 46, 82, 136 |
| MluCI | AATT | 3 cut(s) | 124, 200, 215 |
| MlyI | GAGTC | 2 cut(s) | 397, 497 |
| MmeI | TCCRAC | 1 cut(s) | 107 |
| MnlI | CCTC | 2 cut(s) | 364, 551 |
| MroXI | GAANNNNTTC | 1 cut(s) | 588 |
| MseI | TTAA | 1 cut(s) | 597 |
| MslI | CAYNNNNRTG | 2 cut(s) | 398, 414 |
| MspR9I | CCNGG | 1 cut(s) | 290 |
| MunI | CAATTG | 1 cut(s) | 215 |
| MvaI | CCWGG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 77, 113, 140, 350, 359, 371, 380 |
| NdeI | CATATG | 1 cut(s) | 411 |
| NdeII | GATC | 2 cut(s) | 95, 152 |
| NlaIII | CATG | 1 cut(s) | 60 |
| NlaIV | GGNNCC | 1 cut(s) | 135 |
| PceI | AGGCCT | 1 cut(s) | 25 |
| PdmI | GAANNNNTTC | 1 cut(s) | 588 |
| PfeI | GAWTC | 3 cut(s) | 285, 298, 419 |
| PfoI | TCCNGGA | 1 cut(s) | 288 |
| PkrI | GCNGC | 2 cut(s) | 172, 364 |
| PleI | GAGTC | 2 cut(s) | 397, 497 |
| PpsI | GAGTC | 2 cut(s) | 397, 497 |
| Psp6I | CCWGG | 1 cut(s) | 288 |
| PspGI | CCWGG | 1 cut(s) | 288 |
| PspN4I | GGNNCC | 1 cut(s) | 135 |
| PstI | CTGCAG | 1 cut(s) | 172 |
| RsaI | GTAC | 2 cut(s) | 37, 431 |
| RsaNI | GTAC | 2 cut(s) | 36, 430 |
| RseI | CAYNNNNRTG | 2 cut(s) | 398, 414 |
| SaqAI | TTAA | 1 cut(s) | 597 |
| SatI | GCNGC | 2 cut(s) | 171, 363 |
| Sau3AI | GATC | 2 cut(s) | 95, 152 |
| SchI | GAGTC | 2 cut(s) | 397, 497 |
| ScrFI | CCNGG | 1 cut(s) | 290 |
| SduI | GDGCHC | 3 cut(s) | 46, 82, 136 |
| SfaNI | GCATC | 1 cut(s) | 277 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 398, 414 |
| SmlI | CTYRAG | 3 cut(s) | 272, 302, 339 |
| SmoI | CTYRAG | 3 cut(s) | 272, 302, 339 |
| Sse9I | AATT | 3 cut(s) | 124, 200, 215 |
| SseBI | AGGCCT | 1 cut(s) | 25 |
| SsiI | CCGC | 2 cut(s) | 262, 544 |
| SspMI | CTAG | 1 cut(s) | 521 |
| StuI | AGGCCT | 1 cut(s) | 25 |
| StyD4I | CCNGG | 1 cut(s) | 288 |
| TaaI | ACNGT | 1 cut(s) | 328 |
| TaiI | ACGT | 2 cut(s) | 321, 498 |
| TasI | AATT | 3 cut(s) | 124, 200, 215 |
| TfiI | GAWTC | 3 cut(s) | 285, 298, 419 |
| Tru1I | TTAA | 1 cut(s) | 597 |
| Tru9I | TTAA | 1 cut(s) | 597 |
| TseI | GCWGC | 2 cut(s) | 170, 362 |
| TspDTI | ATGAA | 2 cut(s) | 455, 459 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 30 |
| XmnI | GAANNNNTTC | 1 cut(s) | 588 |
| XspI | CTAG | 1 cut(s) | 521 |