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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 72 |
| AccB1I | GGYRCC | 1 cut(s) | 545 |
| AciI | CCGC | 4 cut(s) | 21, 531, 534, 552 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcsI | RAATTY | 1 cut(s) | 695 |
| AcyI | GRCGYC | 3 cut(s) | 69, 528, 609 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 571 |
| AflIII | ACRYGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 2 cut(s) | 382, 663 |
| AjiI | CACGTC | 1 cut(s) | 142 |
| AjnI | CCWGG | 2 cut(s) | 135, 512 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 294, 326 |
| AleI | CACNNNNGTG | 1 cut(s) | 372 |
| AluBI | AGCT | 3 cut(s) | 46, 161, 386 |
| AluI | AGCT | 3 cut(s) | 46, 161, 386 |
| AlwI | GGATC | 1 cut(s) | 396 |
| Ama87I | CYCGRG | 2 cut(s) | 125, 478 |
| AoxI | GGCC | 3 cut(s) | 99, 291, 684 |
| ApeKI | GCWGC | 2 cut(s) | 38, 641 |
| ApoI | RAATTY | 1 cut(s) | 695 |
| AspA2I | CCTAGG | 2 cut(s) | 569, 631 |
| AspS9I | GGNCC | 2 cut(s) | 291, 685 |
| AsuHPI | GGTGA | 3 cut(s) | 632, 640, 647 |
| AsuNHI | GCTAGC | 1 cut(s) | 575 |
| AvaI | CYCGRG | 2 cut(s) | 125, 478 |
| AvrII | CCTAGG | 2 cut(s) | 569, 631 |
| BanI | GGYRCC | 1 cut(s) | 545 |
| BauI | CACGAG | 1 cut(s) | 254 |
| BbsI | GAAGAC | 1 cut(s) | 279 |
| BbvI | GCAGC | 2 cut(s) | 50, 628 |
| BccI | CCATC | 5 cut(s) | 224, 348, 434, 599, 621 |
| BciT130I | CCWGG | 2 cut(s) | 137, 514 |
| BciVI | GTATCC | 1 cut(s) | 109 |
| BfaI | CTAG | 4 cut(s) | 344, 570, 576, 632 |
| BfuI | GTATCC | 1 cut(s) | 109 |
| BisI | GCNGC | 4 cut(s) | 39, 531, 534, 642 |
| BlnI | CCTAGG | 2 cut(s) | 569, 631 |
| BlsI | GCNGC | 4 cut(s) | 40, 532, 535, 643 |
| Bme1390I | CCNGG | 2 cut(s) | 137, 514 |
| BmeT110I | CYCGRG | 2 cut(s) | 125, 478 |
| BmgBI | CACGTC | 1 cut(s) | 142 |
| BmgT120I | GGNCC | 2 cut(s) | 291, 685 |
| BmiI | GGNNCC | 2 cut(s) | 547, 708 |
| BmrFI | CCNGG | 2 cut(s) | 137, 514 |
| BmsI | GCATC | 4 cut(s) | 25, 100, 628, 667 |
| BmtI | GCTAGC | 1 cut(s) | 579 |
| BpiI | GAAGAC | 1 cut(s) | 279 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 78, 110 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| Bpu10I | CCTNAGC | 2 cut(s) | 24, 681 |
| BpuEI | CTTGAG | 2 cut(s) | 80, 147 |
| BsaHI | GRCGYC | 3 cut(s) | 69, 528, 609 |
| BsaJI | CCNNGG | 4 cut(s) | 135, 569, 600, 631 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 571 |
| Bse3DI | GCAATG | 1 cut(s) | 322 |
| BseBI | CCWGG | 2 cut(s) | 137, 514 |
| BseDI | CCNNGG | 4 cut(s) | 135, 569, 600, 631 |
| BseGI | GGATG | 4 cut(s) | 216, 244, 467, 610 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 571 |
| BseMI | GCAATG | 1 cut(s) | 322 |
| BseMII | CTCAG | 1 cut(s) | 695 |
| BseXI | GCAGC | 2 cut(s) | 50, 628 |
| BshFI | GGCC | 3 cut(s) | 101, 293, 686 |
| BshNI | GGYRCC | 1 cut(s) | 545 |
| BsiHKCI | CYCGRG | 2 cut(s) | 125, 478 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 571 |
| BsnI | GGCC | 3 cut(s) | 101, 293, 686 |
| BsoBI | CYCGRG | 2 cut(s) | 125, 478 |
| Bsp143I | GATC | 1 cut(s) | 401 |
| Bsp19I | CCATGG | 1 cut(s) | 600 |
| BspACI | CCGC | 4 cut(s) | 21, 531, 534, 552 |
| BspANI | GGCC | 3 cut(s) | 101, 293, 686 |
| BspCNI | CTCAG | 1 cut(s) | 694 |
| BspLI | GGNNCC | 2 cut(s) | 547, 708 |
| BspOI | GCTAGC | 1 cut(s) | 579 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BspT107I | GGYRCC | 1 cut(s) | 545 |
| BsrDI | GCAATG | 1 cut(s) | 322 |
| BssECI | CCNNGG | 4 cut(s) | 135, 569, 600, 631 |
| BssMI | GATC | 1 cut(s) | 401 |
| BssNI | GRCGYC | 3 cut(s) | 69, 528, 609 |
| BssSI | CACGAG | 1 cut(s) | 254 |
| BssT1I | CCWWGG | 3 cut(s) | 569, 600, 631 |
| Bst2BI | CACGAG | 1 cut(s) | 254 |
| Bst2UI | CCWGG | 2 cut(s) | 137, 514 |
| Bst4CI | ACNGT | 1 cut(s) | 583 |
| Bst6I | CTCTTC | 1 cut(s) | 429 |
| BstACI | GRCGYC | 3 cut(s) | 69, 528, 609 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 35 |
| BstC8I | GCNNGC | 3 cut(s) | 21, 159, 577 |
| BstDEI | CTNAG | 2 cut(s) | 24, 681 |
| BstDSI | CCRYGG | 1 cut(s) | 600 |
| BstF5I | GGATG | 4 cut(s) | 216, 244, 467, 610 |
| BstKTI | GATC | 1 cut(s) | 404 |
| BstMBI | GATC | 1 cut(s) | 401 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 35, 182, 203 |
| BstNI | CCWGG | 2 cut(s) | 137, 514 |
| BstSCI | CCNGG | 2 cut(s) | 135, 512 |
| BstV1I | GCAGC | 2 cut(s) | 50, 628 |
| BstV2I | GAAGAC | 1 cut(s) | 279 |
| BstX2I | RGATCY | 1 cut(s) | 401 |
| BstYI | RGATCY | 1 cut(s) | 401 |
| BsuI | GTATCC | 1 cut(s) | 109 |
| BsuRI | GGCC | 3 cut(s) | 101, 293, 686 |
| BtgI | CCRYGG | 1 cut(s) | 600 |
| BtgZI | GCGATG | 1 cut(s) | 471 |
| BtrI | CACGTC | 1 cut(s) | 142 |
| BtsCI | GGATG | 4 cut(s) | 216, 244, 467, 610 |
| Cac8I | GCNNGC | 3 cut(s) | 21, 159, 577 |
| Cfr13I | GGNCC | 2 cut(s) | 291, 685 |
| CseI | GACGC | 2 cut(s) | 536, 598 |
| CviAII | CATG | 3 cut(s) | 593, 601, 617 |
| DdeI | CTNAG | 2 cut(s) | 24, 681 |
| DpnI | GATC | 1 cut(s) | 403 |
| DpnII | GATC | 1 cut(s) | 401 |
| Eam1104I | CTCTTC | 1 cut(s) | 429 |
| EarI | CTCTTC | 1 cut(s) | 429 |
| Eco130I | CCWWGG | 3 cut(s) | 569, 600, 631 |
| Eco88I | CYCGRG | 2 cut(s) | 125, 478 |
| EcoRII | CCWGG | 2 cut(s) | 135, 512 |
| EcoT14I | CCWWGG | 3 cut(s) | 569, 600, 631 |
| ErhI | CCWWGG | 3 cut(s) | 569, 600, 631 |
| FaeI | CATG | 3 cut(s) | 596, 604, 620 |
| FatI | CATG | 3 cut(s) | 592, 600, 616 |
| FauI | CCCGC | 1 cut(s) | 28 |
| FauNDI | CATATG | 1 cut(s) | 234 |
| Fnu4HI | GCNGC | 4 cut(s) | 39, 531, 534, 642 |
| FokI | GGATG | 4 cut(s) | 203, 251, 454, 617 |
| Fsp4HI | GCNGC | 4 cut(s) | 39, 531, 534, 642 |
| FspBI | CTAG | 4 cut(s) | 344, 570, 576, 632 |
| GluI | GCNGC | 4 cut(s) | 39, 531, 534, 642 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HaeIII | GGCC | 3 cut(s) | 101, 293, 686 |
| HgaI | GACGC | 2 cut(s) | 536, 598 |
| Hin1I | GRCGYC | 3 cut(s) | 69, 528, 609 |
| Hin1II | CATG | 3 cut(s) | 596, 604, 620 |
| HincII | GTYRAC | 2 cut(s) | 6, 147 |
| HindII | GTYRAC | 2 cut(s) | 6, 147 |
| HindIII | AAGCTT | 1 cut(s) | 384 |
| HinfI | GANTC | 7 cut(s) | 108, 242, 275, 326, 497, 509, 626 |
| HphI | GGTGA | 3 cut(s) | 632, 640, 647 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 147, 559 |
| Hpy188I | TCNGA | 1 cut(s) | 676 |
| Hpy188III | TCNNGA | 4 cut(s) | 125, 323, 338, 478 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 147, 559 |
| HpyAV | CCTTC | 1 cut(s) | 77 |
| HpyCH4III | ACNGT | 1 cut(s) | 583 |
| HpyCH4IV | ACGT | 2 cut(s) | 69, 141 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 79, 644 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 35, 182, 203 |
| HpyF3I | CTNAG | 2 cut(s) | 24, 681 |
| HpySE526I | ACGT | 2 cut(s) | 69, 141 |
| Hsp92I | GRCGYC | 3 cut(s) | 69, 528, 609 |
| Hsp92II | CATG | 3 cut(s) | 596, 604, 620 |
| Kzo9I | GATC | 1 cut(s) | 401 |
| LmnI | GCTCC | 1 cut(s) | 706 |
| Lsp1109I | GCAGC | 2 cut(s) | 50, 628 |
| LweI | GCATC | 4 cut(s) | 25, 100, 628, 667 |
| MaeI | CTAG | 4 cut(s) | 344, 570, 576, 632 |
| MaeII | ACGT | 2 cut(s) | 69, 141 |
| MaeIII | GTNAC | 2 cut(s) | 323, 524 |
| MalI | GATC | 1 cut(s) | 403 |
| MboI | GATC | 1 cut(s) | 401 |
| MboII | GAAGA | 4 cut(s) | 281, 284, 314, 416 |
| MflI | RGATCY | 1 cut(s) | 401 |
| MluCI | AATT | 2 cut(s) | 652, 695 |
| MlyI | GAGTC | 3 cut(s) | 269, 320, 620 |
| MnlI | CCTC | 8 cut(s) | 22, 80, 187, 304, 374, 416, 550, 559 |
| MslI | CAYNNNNRTG | 5 cut(s) | 221, 237, 372, 618, 621 |
| MspR9I | CCNGG | 2 cut(s) | 137, 514 |
| MvaI | CCWGG | 2 cut(s) | 137, 514 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 35, 182, 203 |
| NcoI | CCATGG | 1 cut(s) | 600 |
| NdeI | CATATG | 1 cut(s) | 234 |
| NdeII | GATC | 1 cut(s) | 401 |
| NheI | GCTAGC | 1 cut(s) | 575 |
| NlaIII | CATG | 3 cut(s) | 596, 604, 620 |
| NlaIV | GGNNCC | 2 cut(s) | 547, 708 |
| NmuCI | GTSAC | 2 cut(s) | 323, 524 |
| OliI | CACNNNNGTG | 1 cut(s) | 372 |
| PaeR7I | CTCGAG | 2 cut(s) | 125, 478 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 485 |
| PfeI | GAWTC | 4 cut(s) | 108, 242, 497, 509 |
| PfoI | TCCNGGA | 1 cut(s) | 512 |
| PkrI | GCNGC | 4 cut(s) | 40, 532, 535, 643 |
| PleI | GAGTC | 3 cut(s) | 269, 320, 620 |
| PpsI | GAGTC | 3 cut(s) | 269, 320, 620 |
| Psp6I | CCWGG | 2 cut(s) | 135, 512 |
| PspGI | CCWGG | 2 cut(s) | 135, 512 |
| PspN4I | GGNNCC | 2 cut(s) | 547, 708 |
| PspPI | GGNCC | 2 cut(s) | 291, 685 |
| PsuI | RGATCY | 1 cut(s) | 401 |
| RseI | CAYNNNNRTG | 5 cut(s) | 221, 237, 372, 618, 621 |
| SatI | GCNGC | 4 cut(s) | 39, 531, 534, 642 |
| Sau3AI | GATC | 1 cut(s) | 401 |
| Sau96I | GGNCC | 2 cut(s) | 291, 685 |
| SchI | GAGTC | 3 cut(s) | 269, 320, 620 |
| ScrFI | CCNGG | 2 cut(s) | 137, 514 |
| SetI | ASST | 8 cut(s) | 14, 48, 72, 144, 163, 388, 542, 637 |
| SfaNI | GCATC | 4 cut(s) | 25, 100, 628, 667 |
| Sfr274I | CTCGAG | 2 cut(s) | 125, 478 |
| SlaI | CTCGAG | 2 cut(s) | 125, 478 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 221, 237, 372, 618, 621 |
| SmlI | CTYRAG | 4 cut(s) | 95, 125, 162, 478 |
| SmoI | CTYRAG | 4 cut(s) | 95, 125, 162, 478 |
| Sse9I | AATT | 2 cut(s) | 652, 695 |
| SsiI | CCGC | 4 cut(s) | 21, 531, 534, 552 |
| SspMI | CTAG | 4 cut(s) | 344, 570, 576, 632 |
| StyD4I | CCNGG | 2 cut(s) | 135, 512 |
| StyI | CCWWGG | 3 cut(s) | 569, 600, 631 |
| TaaI | ACNGT | 1 cut(s) | 583 |
| TaiI | ACGT | 2 cut(s) | 72, 144 |
| TaqI | TCGA | 3 cut(s) | 126, 300, 479 |
| TasI | AATT | 2 cut(s) | 652, 695 |
| TauI | GCSGC | 2 cut(s) | 533, 536 |
| TfiI | GAWTC | 4 cut(s) | 108, 242, 497, 509 |
| TseFI | GTSAC | 2 cut(s) | 323, 524 |
| TseI | GCWGC | 2 cut(s) | 38, 641 |
| Tsp45I | GTSAC | 2 cut(s) | 323, 524 |
| TspDTI | ATGAA | 3 cut(s) | 278, 282, 510 |
| XapI | RAATTY | 1 cut(s) | 695 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XhoI | CTCGAG | 2 cut(s) | 125, 478 |
| XmaJI | CCTAGG | 2 cut(s) | 569, 631 |
| XspI | CTAG | 4 cut(s) | 344, 570, 576, 632 |
| ZraI | GACGTC | 1 cut(s) | 70 |