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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 501, 546 |
| Acc36I | ACCTGC | 1 cut(s) | 333 |
| Acc65I | GGTACC | 1 cut(s) | 576 |
| AccB1I | GGYRCC | 3 cut(s) | 121, 576, 743 |
| AccBSI | CCGCTC | 1 cut(s) | 574 |
| AciI | CCGC | 3 cut(s) | 574, 622, 643 |
| AclWI | GGATC | 3 cut(s) | 141, 434, 841 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AcvI | CACGTG | 2 cut(s) | 665, 683 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 668 |
| AfaI | GTAC | 1 cut(s) | 578 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 394, 560, 561, 587, 631, 684, 757 |
| AflIII | ACRYGT | 2 cut(s) | 662, 680 |
| AgsI | TTSAA | 7 cut(s) | 96, 307, 314, 343, 415, 507, 853 |
| AjnI | CCWGG | 2 cut(s) | 117, 630 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 7 cut(s) | 247, 353, 371, 411, 445, 467, 881 |
| AluI | AGCT | 7 cut(s) | 247, 353, 371, 411, 445, 467, 881 |
| AlwI | GGATC | 3 cut(s) | 141, 434, 841 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 1 cut(s) | 610 |
| ApaI | GGGCCC | 1 cut(s) | 614 |
| ApeKI | GCWGC | 1 cut(s) | 881 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| Asp718I | GGTACC | 1 cut(s) | 576 |
| AspA2I | CCTAGG | 1 cut(s) | 755 |
| AspLEI | GCGC | 4 cut(s) | 259, 270, 330, 567 |
| AspS9I | GGNCC | 3 cut(s) | 610, 611, 904 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AvaII | GGWCC | 1 cut(s) | 904 |
| AvrII | CCTAGG | 1 cut(s) | 755 |
| BaeGI | GKGCMC | 1 cut(s) | 614 |
| BanI | GGYRCC | 3 cut(s) | 121, 576, 743 |
| BanII | GRGCYC | 1 cut(s) | 614 |
| BauI | CACGAG | 2 cut(s) | 430, 488 |
| BbrPI | CACGTG | 2 cut(s) | 665, 683 |
| BbsI | GAAGAC | 1 cut(s) | 133 |
| BbvI | GCAGC | 1 cut(s) | 868 |
| BccI | CCATC | 2 cut(s) | 93, 413 |
| BceAI | ACGGC | 1 cut(s) | 696 |
| BciT130I | CCWGG | 2 cut(s) | 119, 632 |
| BciVI | GTATCC | 2 cut(s) | 652, 713 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 5 cut(s) | 15, 260, 708, 756, 878 |
| BfmI | CTRYAG | 2 cut(s) | 348, 462 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| BfuAI | ACCTGC | 1 cut(s) | 333 |
| BfuI | GTATCC | 2 cut(s) | 652, 713 |
| BisI | GCNGC | 1 cut(s) | 882 |
| BlnI | CCTAGG | 1 cut(s) | 755 |
| BlsI | GCNGC | 1 cut(s) | 883 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 131, 632 |
| Bme18I | GGWCC | 1 cut(s) | 904 |
| BmgT120I | GGNCC | 3 cut(s) | 610, 611, 904 |
| BmiI | GGNNCC | 5 cut(s) | 123, 578, 612, 745, 905 |
| BmrFI | CCNGG | 3 cut(s) | 119, 131, 632 |
| BmsI | GCATC | 1 cut(s) | 174 |
| BpiI | GAAGAC | 1 cut(s) | 133 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 2 cut(s) | 665, 683 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 1 cut(s) | 755 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 679, 709, 736, 766 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 394, 560, 561, 587, 631, 684, 757 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 863 |
| BseBI | CCWGG | 2 cut(s) | 119, 632 |
| BseDI | CCNNGG | 1 cut(s) | 755 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 394, 560, 561, 587, 631, 684, 757 |
| BseMI | GCAATG | 2 cut(s) | 283, 863 |
| BseMII | CTCAG | 3 cut(s) | 223, 459, 899 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 614 |
| BseXI | GCAGC | 1 cut(s) | 868 |
| BshFI | GGCC | 1 cut(s) | 612 |
| BshNI | GGYRCC | 3 cut(s) | 121, 576, 743 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 615 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 394, 560, 561, 587, 631, 684, 757 |
| BsmFI | GGGAC | 1 cut(s) | 615 |
| BsmI | GAATGC | 1 cut(s) | 241 |
| BsnI | GGCC | 1 cut(s) | 612 |
| Bsp120I | GGGCCC | 1 cut(s) | 610 |
| Bsp1286I | GDGCHC | 1 cut(s) | 614 |
| Bsp143I | GATC | 4 cut(s) | 133, 228, 426, 833 |
| BspACI | CCGC | 3 cut(s) | 574, 622, 643 |
| BspANI | GGCC | 1 cut(s) | 612 |
| BspCNI | CTCAG | 3 cut(s) | 222, 460, 900 |
| BspHI | TCATGA | 1 cut(s) | 532 |
| BspLI | GGNNCC | 5 cut(s) | 123, 578, 612, 745, 905 |
| BspMI | ACCTGC | 1 cut(s) | 333 |
| BspPI | GGATC | 3 cut(s) | 141, 434, 841 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 3 cut(s) | 121, 576, 743 |
| BsrBI | CCGCTC | 1 cut(s) | 574 |
| BsrDI | GCAATG | 2 cut(s) | 283, 863 |
| BssECI | CCNNGG | 1 cut(s) | 755 |
| BssMI | GATC | 4 cut(s) | 133, 228, 426, 833 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 2 cut(s) | 430, 488 |
| BssT1I | CCWWGG | 1 cut(s) | 755 |
| Bst2BI | CACGAG | 2 cut(s) | 430, 488 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 632 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 782 |
| BstBAI | YACGTR | 2 cut(s) | 665, 683 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 868 |
| BstDEI | CTNAG | 5 cut(s) | 209, 468, 522, 582, 908 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 4 cut(s) | 259, 270, 330, 567 |
| BstKTI | GATC | 4 cut(s) | 136, 231, 429, 836 |
| BstMBI | GATC | 4 cut(s) | 133, 228, 426, 833 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 265, 571, 782, 867 |
| BstNI | CCWGG | 2 cut(s) | 119, 632 |
| BstNSI | RCATGY | 3 cut(s) | 167, 776, 785 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 117, 129, 630 |
| BstSFI | CTRYAG | 2 cut(s) | 348, 462 |
| BstSLI | GKGCMC | 1 cut(s) | 614 |
| BstV1I | GCAGC | 1 cut(s) | 868 |
| BstV2I | GAAGAC | 1 cut(s) | 133 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuI | GTATCC | 2 cut(s) | 652, 713 |
| BsuRI | GGCC | 1 cut(s) | 612 |
| BveI | ACCTGC | 1 cut(s) | 333 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 868 |
| CciI | TCATGA | 1 cut(s) | 532 |
| CfoI | GCGC | 4 cut(s) | 259, 270, 330, 567 |
| Cfr13I | GGNCC | 3 cut(s) | 610, 611, 904 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 1 cut(s) | 577 |
| CviAII | CATG | 8 cut(s) | 31, 164, 389, 476, 533, 596, 773, 782 |
| CviQI | GTAC | 1 cut(s) | 577 |
| DdeI | CTNAG | 5 cut(s) | 209, 468, 522, 582, 908 |
| DpnI | GATC | 4 cut(s) | 135, 230, 428, 835 |
| DpnII | GATC | 4 cut(s) | 133, 228, 426, 833 |
| DraIII | CACNNNGTG | 1 cut(s) | 668 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 1 cut(s) | 755 |
| Eco24I | GRGCYC | 1 cut(s) | 614 |
| Eco47I | GGWCC | 1 cut(s) | 904 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco72I | CACGTG | 2 cut(s) | 665, 683 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 904 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 630 |
| EcoT14I | CCWWGG | 1 cut(s) | 755 |
| EcoT38I | GRGCYC | 1 cut(s) | 614 |
| ErhI | CCWWGG | 1 cut(s) | 755 |
| FaeI | CATG | 8 cut(s) | 34, 167, 392, 479, 536, 599, 776, 785 |
| FaqI | GGGAC | 1 cut(s) | 615 |
| FatI | CATG | 8 cut(s) | 30, 163, 388, 475, 532, 595, 772, 781 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 882 |
| FriOI | GRGCYC | 1 cut(s) | 614 |
| Fsp4HI | GCNGC | 1 cut(s) | 882 |
| FspBI | CTAG | 5 cut(s) | 15, 260, 708, 756, 878 |
| GlaI | GCGC | 4 cut(s) | 258, 269, 329, 566 |
| GluI | GCNGC | 1 cut(s) | 882 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HaeIII | GGCC | 1 cut(s) | 612 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 4 cut(s) | 259, 270, 330, 567 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 8 cut(s) | 34, 167, 392, 479, 536, 599, 776, 785 |
| Hin6I | GCGC | 4 cut(s) | 257, 268, 328, 565 |
| HinP1I | GCGC | 4 cut(s) | 257, 268, 328, 565 |
| HindIII | AAGCTT | 1 cut(s) | 409 |
| HinfI | GANTC | 2 cut(s) | 38, 287 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 1 cut(s) | 405 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 212, 367 |
| Hpy188III | TCNNGA | 5 cut(s) | 181, 232, 430, 490, 533 |
| Hpy8I | GTNNAC | 1 cut(s) | 405 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 629 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 3 cut(s) | 604, 664, 682 |
| HpyCH4V | TGCA | 7 cut(s) | 148, 239, 551, 776, 785, 861, 884 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 265, 571, 782, 867 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 468, 522, 582, 908 |
| HpySE526I | ACGT | 3 cut(s) | 604, 664, 682 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 8 cut(s) | 34, 167, 392, 479, 536, 599, 776, 785 |
| HspAI | GCGC | 4 cut(s) | 257, 268, 328, 565 |
| KpnI | GGTACC | 1 cut(s) | 580 |
| Kzo9I | GATC | 4 cut(s) | 133, 228, 426, 833 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 571 |
| LpnPI | CCDG | 9 cut(s) | 30, 104, 131, 144, 312, 338, 617, 644, 877 |
| Lsp1109I | GCAGC | 1 cut(s) | 868 |
| LweI | GCATC | 1 cut(s) | 174 |
| MaeI | CTAG | 5 cut(s) | 15, 260, 708, 756, 878 |
| MaeII | ACGT | 3 cut(s) | 604, 664, 682 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 4 cut(s) | 135, 230, 428, 835 |
| MbiI | CCGCTC | 1 cut(s) | 574 |
| MboI | GATC | 4 cut(s) | 133, 228, 426, 833 |
| MboII | GAAGA | 3 cut(s) | 133, 275, 365 |
| MfeI | CAATTG | 1 cut(s) | 837 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 614 |
| MluCI | AATT | 7 cut(s) | 102, 361, 496, 502, 541, 791, 837 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 1 cut(s) | 794 |
| MslI | CAYNNNNRTG | 3 cut(s) | 488, 813, 828 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 3 cut(s) | 119, 131, 632 |
| MunI | CAATTG | 1 cut(s) | 837 |
| Mva1269I | GAATGC | 1 cut(s) | 241 |
| MvaI | CCWGG | 2 cut(s) | 119, 632 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 265, 571, 782, 867 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 4 cut(s) | 133, 228, 426, 833 |
| NlaIII | CATG | 8 cut(s) | 34, 167, 392, 479, 536, 599, 776, 785 |
| NlaIV | GGNNCC | 5 cut(s) | 123, 578, 612, 745, 905 |
| NspI | RCATGY | 3 cut(s) | 167, 776, 785 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 532 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PctI | GAATGC | 1 cut(s) | 241 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 883 |
| PleI | GAGTC | 1 cut(s) | 32 |
| PmaCI | CACGTG | 2 cut(s) | 665, 683 |
| PmlI | CACGTG | 2 cut(s) | 665, 683 |
| PpsI | GAGTC | 1 cut(s) | 32 |
| Ppu21I | YACGTR | 2 cut(s) | 665, 683 |
| PpuMI | RGGWCCY | 1 cut(s) | 904 |
| PsiI | TTATAA | 2 cut(s) | 501, 546 |
| Psp5II | RGGWCCY | 1 cut(s) | 904 |
| Psp6I | CCWGG | 2 cut(s) | 117, 630 |
| PspCI | CACGTG | 2 cut(s) | 665, 683 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 117, 630 |
| PspN4I | GGNNCC | 5 cut(s) | 123, 578, 612, 745, 905 |
| PspOMI | GGGCCC | 1 cut(s) | 610 |
| PspPI | GGNCC | 3 cut(s) | 610, 611, 904 |
| PspPPI | RGGWCCY | 1 cut(s) | 904 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 578 |
| RsaNI | GTAC | 1 cut(s) | 577 |
| RseI | CAYNNNNRTG | 3 cut(s) | 488, 813, 828 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 1 cut(s) | 794 |
| SatI | GCNGC | 1 cut(s) | 882 |
| Sau3AI | GATC | 4 cut(s) | 133, 228, 426, 833 |
| Sau96I | GGNCC | 3 cut(s) | 610, 611, 904 |
| SchI | GAGTC | 1 cut(s) | 32 |
| ScrFI | CCNGG | 3 cut(s) | 119, 131, 632 |
| SduI | GDGCHC | 1 cut(s) | 614 |
| SfaNI | GCATC | 1 cut(s) | 174 |
| SfcI | CTRYAG | 2 cut(s) | 348, 462 |
| SinI | GGWCC | 1 cut(s) | 904 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 488, 813, 828 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 7 cut(s) | 102, 361, 496, 502, 541, 791, 837 |
| SsiI | CCGC | 3 cut(s) | 574, 622, 643 |
| SspMI | CTAG | 5 cut(s) | 15, 260, 708, 756, 878 |
| StyD4I | CCNGG | 3 cut(s) | 117, 129, 630 |
| StyI | CCWWGG | 1 cut(s) | 755 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaiI | ACGT | 3 cut(s) | 607, 667, 685 |
| TaqI | TCGA | 3 cut(s) | 5, 227, 826 |
| TasI | AATT | 7 cut(s) | 102, 361, 496, 502, 541, 791, 837 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 1 cut(s) | 794 |
| Tru9I | TTAA | 1 cut(s) | 794 |
| TseI | GCWGC | 1 cut(s) | 881 |
| TspDTI | ATGAA | 3 cut(s) | 24, 428, 521 |
| TspGWI | ACGGA | 1 cut(s) | 439 |
| VpaK11BI | GGWCC | 1 cut(s) | 904 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XceI | RCATGY | 3 cut(s) | 167, 776, 785 |
| XmaJI | CCTAGG | 1 cut(s) | 755 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 5 cut(s) | 15, 260, 708, 756, 878 |