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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 549 |
| AciI | CCGC | 1 cut(s) | 226 |
| AclI | AACGTT | 1 cut(s) | 177 |
| AclWI | GGATC | 1 cut(s) | 486 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 545 |
| AgsI | TTSAA | 2 cut(s) | 241, 332 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 153, 185 |
| AluBI | AGCT | 4 cut(s) | 20, 26, 427, 437 |
| AluI | AGCT | 4 cut(s) | 20, 26, 427, 437 |
| Alw21I | GWGCWC | 1 cut(s) | 429 |
| Alw26I | GTCTC | 2 cut(s) | 157, 361 |
| AlwI | GGATC | 1 cut(s) | 486 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 270 |
| AspLEI | GCGC | 1 cut(s) | 536 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| BaeGI | GKGCMC | 1 cut(s) | 552 |
| BanI | GGYRCC | 1 cut(s) | 549 |
| BanII | GRGCYC | 1 cut(s) | 429 |
| BbsI | GAAGAC | 1 cut(s) | 138 |
| Bbv12I | GWGCWC | 1 cut(s) | 429 |
| BbvI | GCAGC | 1 cut(s) | 56 |
| BccI | CCATC | 4 cut(s) | 80, 207, 361, 399 |
| BcoDI | GTCTC | 2 cut(s) | 157, 361 |
| BfaI | CTAG | 1 cut(s) | 203 |
| BfoI | RGCGCY | 1 cut(s) | 537 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 53 |
| BisI | GCNGC | 1 cut(s) | 45 |
| BlsI | GCNGC | 1 cut(s) | 46 |
| BmiI | GGNNCC | 1 cut(s) | 551 |
| BpiI | GAAGAC | 1 cut(s) | 138 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 1 cut(s) | 6 |
| BsaI | GGTCTC | 1 cut(s) | 157 |
| BsaJI | CCNNGG | 1 cut(s) | 495 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 545 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| BseDI | CCNNGG | 1 cut(s) | 495 |
| BseGI | GGATG | 2 cut(s) | 103, 465 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 545 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BseSI | GKGCMC | 1 cut(s) | 552 |
| BseXI | GCAGC | 1 cut(s) | 56 |
| BshNI | GGYRCC | 1 cut(s) | 549 |
| BsiHKAI | GWGCWC | 1 cut(s) | 429 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 545 |
| BsmAI | GTCTC | 2 cut(s) | 157, 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| Bso31I | GGTCTC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 2 cut(s) | 429, 552 |
| Bsp143I | GATC | 2 cut(s) | 309, 491 |
| BspACI | CCGC | 1 cut(s) | 226 |
| BspCNI | CTCAG | 1 cut(s) | 275 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 1 cut(s) | 551 |
| BspPI | GGATC | 1 cut(s) | 486 |
| BspT107I | GGYRCC | 1 cut(s) | 549 |
| BspTNI | GGTCTC | 1 cut(s) | 157 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 495 |
| BssMI | GATC | 2 cut(s) | 309, 491 |
| BstC8I | GCNNGC | 1 cut(s) | 18 |
| BstDEI | CTNAG | 2 cut(s) | 49, 262 |
| BstDSI | CCRYGG | 1 cut(s) | 495 |
| BstF5I | GGATG | 2 cut(s) | 103, 465 |
| BstH2I | RGCGCY | 1 cut(s) | 537 |
| BstHHI | GCGC | 1 cut(s) | 536 |
| BstKTI | GATC | 2 cut(s) | 312, 494 |
| BstMAI | GTCTC | 2 cut(s) | 157, 361 |
| BstMBI | GATC | 2 cut(s) | 309, 491 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 53 |
| BstSLI | GKGCMC | 1 cut(s) | 552 |
| BstV1I | GCAGC | 1 cut(s) | 56 |
| BstV2I | GAAGAC | 1 cut(s) | 138 |
| BstX2I | RGATCY | 1 cut(s) | 491 |
| BstYI | RGATCY | 1 cut(s) | 491 |
| BtgI | CCRYGG | 1 cut(s) | 495 |
| BtgZI | GCGATG | 1 cut(s) | 335 |
| BtsCI | GGATG | 2 cut(s) | 103, 465 |
| Cac8I | GCNNGC | 1 cut(s) | 18 |
| CciI | TCATGA | 1 cut(s) | 421 |
| CfoI | GCGC | 1 cut(s) | 536 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviAII | CATG | 2 cut(s) | 422, 458 |
| CviJI | RGCY | 7 cut(s) | 20, 26, 47, 71, 222, 427, 437 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 26, 47, 71, 222, 427, 437 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 2 cut(s) | 49, 262 |
| DpnI | GATC | 2 cut(s) | 311, 493 |
| DpnII | GATC | 2 cut(s) | 309, 491 |
| Ecl136II | GAGCTC | 1 cut(s) | 427 |
| Eco24I | GRGCYC | 1 cut(s) | 429 |
| Eco31I | GGTCTC | 1 cut(s) | 157 |
| Eco53kI | GAGCTC | 1 cut(s) | 427 |
| EcoICRI | GAGCTC | 1 cut(s) | 427 |
| EcoT38I | GRGCYC | 1 cut(s) | 429 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaeI | CATG | 2 cut(s) | 425, 461 |
| FatI | CATG | 2 cut(s) | 421, 457 |
| FauNDI | CATATG | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 1 cut(s) | 45 |
| FokI | GGATG | 2 cut(s) | 110, 452 |
| FriOI | GRGCYC | 1 cut(s) | 429 |
| Fsp4HI | GCNGC | 1 cut(s) | 45 |
| FspBI | CTAG | 1 cut(s) | 203 |
| GlaI | GCGC | 1 cut(s) | 535 |
| GluI | GCNGC | 1 cut(s) | 45 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HaeII | RGCGCY | 1 cut(s) | 537 |
| HhaI | GCGC | 1 cut(s) | 536 |
| Hin1II | CATG | 2 cut(s) | 425, 461 |
| Hin6I | GCGC | 1 cut(s) | 534 |
| HinP1I | GCGC | 1 cut(s) | 534 |
| HindIII | AAGCTT | 1 cut(s) | 24 |
| HinfI | GANTC | 7 cut(s) | 85, 101, 185, 260, 337, 387, 518 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 1 cut(s) | 265 |
| Hpy188III | TCNNGA | 6 cut(s) | 182, 197, 251, 422, 489, 515 |
| Hpy99I | CGWCG | 1 cut(s) | 395 |
| HpyAV | CCTTC | 1 cut(s) | 135 |
| HpyCH4IV | ACGT | 2 cut(s) | 177, 393 |
| HpyCH4V | TGCA | 1 cut(s) | 362 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 53 |
| HpyF3I | CTNAG | 2 cut(s) | 49, 262 |
| HpySE526I | ACGT | 2 cut(s) | 177, 393 |
| Hsp92II | CATG | 2 cut(s) | 425, 461 |
| HspAI | GCGC | 1 cut(s) | 534 |
| Kzo9I | GATC | 2 cut(s) | 309, 491 |
| LmnI | GCTCC | 1 cut(s) | 434 |
| LpnPI | CCDG | 5 cut(s) | 122, 151, 203, 210, 528 |
| Lsp1109I | GCAGC | 1 cut(s) | 56 |
| MaeI | CTAG | 1 cut(s) | 203 |
| MaeII | ACGT | 2 cut(s) | 177, 393 |
| MaeIII | GTNAC | 1 cut(s) | 182 |
| MalI | GATC | 2 cut(s) | 311, 493 |
| MboI | GATC | 2 cut(s) | 309, 491 |
| MboII | GAAGA | 4 cut(s) | 140, 143, 173, 487 |
| MflI | RGATCY | 1 cut(s) | 491 |
| MhlI | GDGCHC | 2 cut(s) | 429, 552 |
| MluCI | AATT | 3 cut(s) | 293, 484, 523 |
| MlyI | GAGTC | 4 cut(s) | 79, 179, 254, 331 |
| MnlI | CCTC | 3 cut(s) | 46, 233, 539 |
| MroXI | GAANNNNTTC | 1 cut(s) | 270 |
| MseI | TTAA | 4 cut(s) | 80, 279, 287, 396 |
| MslI | CAYNNNNRTG | 3 cut(s) | 80, 96, 470 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 41, 53 |
| NdeI | CATATG | 1 cut(s) | 93 |
| NdeII | GATC | 2 cut(s) | 309, 491 |
| NlaIII | CATG | 2 cut(s) | 425, 461 |
| NlaIV | GGNNCC | 1 cut(s) | 551 |
| NmuCI | GTSAC | 1 cut(s) | 182 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PdmI | GAANNNNTTC | 1 cut(s) | 270 |
| PfeI | GAWTC | 3 cut(s) | 101, 387, 518 |
| PkrI | GCNGC | 1 cut(s) | 46 |
| PleI | GAGTC | 4 cut(s) | 79, 179, 254, 331 |
| PpsI | GAGTC | 4 cut(s) | 79, 179, 254, 331 |
| Psp124BI | GAGCTC | 1 cut(s) | 429 |
| Psp1406I | AACGTT | 1 cut(s) | 177 |
| PspN4I | GGNNCC | 1 cut(s) | 551 |
| PsuI | RGATCY | 1 cut(s) | 491 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| RseI | CAYNNNNRTG | 3 cut(s) | 80, 96, 470 |
| SacI | GAGCTC | 1 cut(s) | 429 |
| SaqAI | TTAA | 4 cut(s) | 80, 279, 287, 396 |
| SatI | GCNGC | 1 cut(s) | 45 |
| Sau3AI | GATC | 2 cut(s) | 309, 491 |
| SchI | GAGTC | 4 cut(s) | 79, 179, 254, 331 |
| SduI | GDGCHC | 2 cut(s) | 429, 552 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 80, 96, 470 |
| SmlI | CTYRAG | 1 cut(s) | 21 |
| SmoI | CTYRAG | 1 cut(s) | 21 |
| Sse9I | AATT | 3 cut(s) | 293, 484, 523 |
| SsiI | CCGC | 1 cut(s) | 226 |
| SspMI | CTAG | 1 cut(s) | 203 |
| SstI | GAGCTC | 1 cut(s) | 429 |
| TaiI | ACGT | 2 cut(s) | 180, 396 |
| TaqI | TCGA | 4 cut(s) | 159, 385, 390, 488 |
| TasI | AATT | 3 cut(s) | 293, 484, 523 |
| TfiI | GAWTC | 3 cut(s) | 101, 387, 518 |
| Tru1I | TTAA | 4 cut(s) | 80, 279, 287, 396 |
| Tru9I | TTAA | 4 cut(s) | 80, 279, 287, 396 |
| TseFI | GTSAC | 1 cut(s) | 182 |
| TseI | GCWGC | 1 cut(s) | 44 |
| Tsp45I | GTSAC | 1 cut(s) | 182 |
| TspDTI | ATGAA | 3 cut(s) | 141, 410, 455 |
| TspGWI | ACGGA | 1 cut(s) | 484 |
| XmnI | GAANNNNTTC | 1 cut(s) | 270 |
| XspI | CTAG | 1 cut(s) | 203 |