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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 855 |
| AccII | CGCG | 6 cut(s) | 6, 15, 48, 50, 67, 75 |
| AclWI | GGATC | 3 cut(s) | 63, 145, 657 |
| AcoI | YGGCCR | 2 cut(s) | 76, 842 |
| AcsI | RAATTY | 2 cut(s) | 408, 534 |
| AcyI | GRCGYC | 1 cut(s) | 856 |
| AdeI | CACNNNGTG | 1 cut(s) | 1037 |
| AfaI | GTAC | 3 cut(s) | 145, 354, 949 |
| AgsI | TTSAA | 3 cut(s) | 131, 482, 893 |
| AjiI | CACGTC | 1 cut(s) | 242 |
| AjnI | CCWGG | 1 cut(s) | 235 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 394, 426 |
| AluBI | AGCT | 6 cut(s) | 114, 261, 267, 668, 678, 1029 |
| AluI | AGCT | 6 cut(s) | 114, 261, 267, 668, 678, 1029 |
| Alw26I | GTCTC | 1 cut(s) | 398 |
| AlwI | GGATC | 3 cut(s) | 63, 145, 657 |
| Ama87I | CYCGRG | 1 cut(s) | 225 |
| AoxI | GGCC | 3 cut(s) | 76, 99, 842 |
| ApoI | RAATTY | 2 cut(s) | 408, 534 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 511 |
| AspA2I | CCTAGG | 1 cut(s) | 102 |
| AspLEI | GCGC | 2 cut(s) | 50, 858 |
| AspS9I | GGNCC | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 2 cut(s) | 317, 986 |
| AvaI | CYCGRG | 1 cut(s) | 225 |
| AvaII | GGWCC | 1 cut(s) | 106 |
| AvrII | CCTAGG | 1 cut(s) | 102 |
| BaeGI | GKGCMC | 1 cut(s) | 965 |
| BalI | TGGCCA | 1 cut(s) | 844 |
| BanI | GGYRCC | 1 cut(s) | 855 |
| BanII | GRGCYC | 1 cut(s) | 980 |
| BbsI | GAAGAC | 2 cut(s) | 379, 582 |
| BccI | CCATC | 5 cut(s) | 90, 198, 321, 448, 883 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 621, 655 |
| BciT130I | CCWGG | 1 cut(s) | 237 |
| BciVI | GTATCC | 1 cut(s) | 209 |
| BcoDI | GTCTC | 1 cut(s) | 398 |
| BfaI | CTAG | 3 cut(s) | 103, 232, 444 |
| BfmI | CTRYAG | 1 cut(s) | 1065 |
| BfoI | RGCGCY | 1 cut(s) | 859 |
| BfuI | GTATCC | 1 cut(s) | 209 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 294 |
| BglII | AGATCT | 1 cut(s) | 732 |
| BisI | GCNGC | 2 cut(s) | 76, 79 |
| BlnI | CCTAGG | 1 cut(s) | 102 |
| BlsI | GCNGC | 2 cut(s) | 77, 80 |
| BmcAI | AGTACT | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 1 cut(s) | 237 |
| Bme18I | GGWCC | 1 cut(s) | 106 |
| BmeT110I | CYCGRG | 1 cut(s) | 225 |
| BmgBI | CACGTC | 1 cut(s) | 242 |
| BmgT120I | GGNCC | 1 cut(s) | 106 |
| BmiI | GGNNCC | 2 cut(s) | 798, 857 |
| BmrFI | CCNGG | 1 cut(s) | 237 |
| BmsI | GCATC | 1 cut(s) | 200 |
| BpiI | GAAGAC | 2 cut(s) | 379, 582 |
| BpmI | CTGGAG | 1 cut(s) | 333 |
| BpuEI | CTTGAG | 2 cut(s) | 180, 247 |
| Bsa29I | ATCGAT | 1 cut(s) | 631 |
| BsaHI | GRCGYC | 1 cut(s) | 856 |
| BsaI | GGTCTC | 1 cut(s) | 398 |
| BsaJI | CCNNGG | 3 cut(s) | 73, 88, 102 |
| Bse1I | ACTGG | 1 cut(s) | 350 |
| BseBI | CCWGG | 1 cut(s) | 237 |
| BseCI | ATCGAT | 1 cut(s) | 631 |
| BseDI | CCNNGG | 3 cut(s) | 73, 88, 102 |
| BseGI | GGATG | 4 cut(s) | 82, 316, 344, 706 |
| BseMII | CTCAG | 1 cut(s) | 965 |
| BseNI | ACTGG | 1 cut(s) | 350 |
| BseRI | GAGGAG | 1 cut(s) | 10 |
| BseSI | GKGCMC | 1 cut(s) | 965 |
| BseX3I | CGGCCG | 1 cut(s) | 76 |
| Bsh1236I | CGCG | 6 cut(s) | 6, 15, 48, 50, 67, 75 |
| Bsh1285I | CGRYCG | 2 cut(s) | 46, 79 |
| BshFI | GGCC | 3 cut(s) | 78, 101, 844 |
| BshNI | GGYRCC | 1 cut(s) | 855 |
| BshVI | ATCGAT | 1 cut(s) | 631 |
| BsiEI | CGRYCG | 2 cut(s) | 46, 79 |
| BsiHKCI | CYCGRG | 1 cut(s) | 225 |
| BsmAI | GTCTC | 1 cut(s) | 398 |
| BsmI | GAATGC | 1 cut(s) | 99 |
| BsnI | GGCC | 3 cut(s) | 78, 101, 844 |
| Bso31I | GGTCTC | 1 cut(s) | 398 |
| BsoBI | CYCGRG | 1 cut(s) | 225 |
| Bsp1286I | GDGCHC | 2 cut(s) | 965, 980 |
| Bsp143I | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| Bsp68I | TCGCGA | 1 cut(s) | 67 |
| BspANI | GGCC | 3 cut(s) | 78, 101, 844 |
| BspCNI | CTCAG | 1 cut(s) | 964 |
| BspDI | ATCGAT | 1 cut(s) | 631 |
| BspFNI | CGCG | 6 cut(s) | 6, 15, 48, 50, 67, 75 |
| BspHI | TCATGA | 1 cut(s) | 662 |
| BspLI | GGNNCC | 2 cut(s) | 798, 857 |
| BspPI | GGATC | 3 cut(s) | 63, 145, 657 |
| BspT107I | GGYRCC | 1 cut(s) | 855 |
| BspTNI | GGTCTC | 1 cut(s) | 398 |
| BsrI | ACTGG | 1 cut(s) | 350 |
| BssECI | CCNNGG | 3 cut(s) | 73, 88, 102 |
| BssMI | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| BssNI | GRCGYC | 1 cut(s) | 856 |
| BssT1I | CCWWGG | 2 cut(s) | 88, 102 |
| Bst2UI | CCWGG | 1 cut(s) | 237 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| Bst6I | CTCTTC | 1 cut(s) | 797 |
| BstACI | GRCGYC | 1 cut(s) | 856 |
| BstC8I | GCNNGC | 3 cut(s) | 99, 189, 259 |
| BstDEI | CTNAG | 5 cut(s) | 159, 290, 616, 951, 1020 |
| BstDSI | CCRYGG | 1 cut(s) | 73 |
| BstF5I | GGATG | 4 cut(s) | 82, 316, 344, 706 |
| BstFNI | CGCG | 6 cut(s) | 6, 15, 48, 50, 67, 75 |
| BstH2I | RGCGCY | 1 cut(s) | 859 |
| BstHHI | GCGC | 2 cut(s) | 50, 858 |
| BstKTI | GATC | 6 cut(s) | 71, 140, 652, 735, 1052, 1064 |
| BstMAI | GTCTC | 1 cut(s) | 398 |
| BstMBI | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| BstMCI | CGRYCG | 2 cut(s) | 46, 79 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 12, 56, 273, 294, 1005 |
| BstNI | CCWGG | 1 cut(s) | 237 |
| BstSCI | CCNGG | 1 cut(s) | 235 |
| BstSFI | CTRYAG | 1 cut(s) | 1065 |
| BstSLI | GKGCMC | 1 cut(s) | 965 |
| BstUI | CGCG | 6 cut(s) | 6, 15, 48, 50, 67, 75 |
| BstV2I | GAAGAC | 2 cut(s) | 379, 582 |
| BstX2I | RGATCY | 1 cut(s) | 732 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 89, 852 |
| BstYI | RGATCY | 1 cut(s) | 732 |
| BstZI | CGGCCG | 1 cut(s) | 76 |
| Bsu15I | ATCGAT | 1 cut(s) | 631 |
| BsuI | GTATCC | 1 cut(s) | 209 |
| BsuRI | GGCC | 3 cut(s) | 78, 101, 844 |
| BsuTUI | ATCGAT | 1 cut(s) | 631 |
| BtgI | CCRYGG | 1 cut(s) | 73 |
| BtgZI | GCGATG | 1 cut(s) | 576 |
| BtrI | CACGTC | 1 cut(s) | 242 |
| BtsCI | GGATG | 4 cut(s) | 82, 316, 344, 706 |
| BtuMI | TCGCGA | 1 cut(s) | 67 |
| Cac8I | GCNNGC | 3 cut(s) | 99, 189, 259 |
| CciI | TCATGA | 1 cut(s) | 662 |
| CciNI | GCGGCCGC | 1 cut(s) | 76 |
| CfoI | GCGC | 2 cut(s) | 50, 858 |
| Cfr13I | GGNCC | 1 cut(s) | 106 |
| Cfr42I | CCGCGG | 1 cut(s) | 76 |
| ClaI | ATCGAT | 1 cut(s) | 631 |
| CseI | GACGC | 1 cut(s) | 894 |
| Csp6I | GTAC | 3 cut(s) | 144, 353, 948 |
| CviAII | CATG | 4 cut(s) | 431, 663, 793, 846 |
| CviQI | GTAC | 3 cut(s) | 144, 353, 948 |
| DdeI | CTNAG | 5 cut(s) | 159, 290, 616, 951, 1020 |
| DinI | GGCGCC | 1 cut(s) | 857 |
| DpnI | GATC | 6 cut(s) | 70, 139, 651, 734, 1051, 1063 |
| DpnII | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| DraIII | CACNNNGTG | 1 cut(s) | 1037 |
| EaeI | YGGCCR | 2 cut(s) | 76, 842 |
| EagI | CGGCCG | 1 cut(s) | 76 |
| Eam1104I | CTCTTC | 1 cut(s) | 797 |
| EarI | CTCTTC | 1 cut(s) | 797 |
| EciI | GGCGGA | 1 cut(s) | 174 |
| EclXI | CGGCCG | 1 cut(s) | 76 |
| Eco130I | CCWWGG | 2 cut(s) | 88, 102 |
| Eco24I | GRGCYC | 1 cut(s) | 980 |
| Eco31I | GGTCTC | 1 cut(s) | 398 |
| Eco47I | GGWCC | 1 cut(s) | 106 |
| Eco52I | CGGCCG | 1 cut(s) | 76 |
| Eco88I | CYCGRG | 1 cut(s) | 225 |
| EcoRI | GAATTC | 1 cut(s) | 534 |
| EcoRII | CCWGG | 1 cut(s) | 235 |
| EcoT14I | CCWWGG | 2 cut(s) | 88, 102 |
| EcoT38I | GRGCYC | 1 cut(s) | 980 |
| EgeI | GGCGCC | 1 cut(s) | 857 |
| EheI | GGCGCC | 1 cut(s) | 857 |
| ErhI | CCWWGG | 2 cut(s) | 88, 102 |
| FaeI | CATG | 4 cut(s) | 434, 666, 796, 849 |
| FatI | CATG | 4 cut(s) | 430, 662, 792, 845 |
| FauI | CCCGC | 3 cut(s) | 11, 20, 80 |
| FauNDI | CATATG | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 2 cut(s) | 76, 79 |
| FokI | GGATG | 4 cut(s) | 69, 303, 351, 693 |
| FriOI | GRGCYC | 1 cut(s) | 980 |
| Fsp4HI | GCNGC | 2 cut(s) | 76, 79 |
| FspBI | CTAG | 3 cut(s) | 103, 232, 444 |
| GlaI | GCGC | 2 cut(s) | 49, 857 |
| GluI | GCNGC | 2 cut(s) | 76, 79 |
| GsuI | CTGGAG | 1 cut(s) | 333 |
| HaeII | RGCGCY | 1 cut(s) | 859 |
| HaeIII | GGCC | 3 cut(s) | 78, 101, 844 |
| HgaI | GACGC | 1 cut(s) | 894 |
| HhaI | GCGC | 2 cut(s) | 50, 858 |
| Hin1I | GRCGYC | 1 cut(s) | 856 |
| Hin1II | CATG | 4 cut(s) | 434, 666, 796, 849 |
| Hin6I | GCGC | 2 cut(s) | 48, 856 |
| HinP1I | GCGC | 2 cut(s) | 48, 856 |
| HincII | GTYRAC | 1 cut(s) | 810 |
| HindII | GTYRAC | 1 cut(s) | 810 |
| HindIII | AAGCTT | 1 cut(s) | 265 |
| HinfI | GANTC | 9 cut(s) | 17, 33, 208, 221, 326, 342, 578, 628, 759 |
| HphI | GGTGA | 2 cut(s) | 317, 986 |
| Hpy166II | GTNNAC | 1 cut(s) | 810 |
| Hpy188I | TCNGA | 1 cut(s) | 506 |
| Hpy188III | TCNNGA | 8 cut(s) | 66, 177, 225, 492, 663, 730, 937, 1053 |
| Hpy8I | GTNNAC | 1 cut(s) | 810 |
| HpyAV | CCTTC | 3 cut(s) | 137, 376, 599 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4IV | ACGT | 2 cut(s) | 241, 812 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 122, 603, 642 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 12, 56, 273, 294, 1005 |
| HpyF3I | CTNAG | 5 cut(s) | 159, 290, 616, 951, 1020 |
| HpySE526I | ACGT | 2 cut(s) | 241, 812 |
| Hsp92I | GRCGYC | 1 cut(s) | 856 |
| Hsp92II | CATG | 4 cut(s) | 434, 666, 796, 849 |
| HspAI | GCGC | 2 cut(s) | 48, 856 |
| KasI | GGCGCC | 1 cut(s) | 855 |
| KspI | CCGCGG | 1 cut(s) | 76 |
| Kzo9I | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| LmnI | GCTCC | 1 cut(s) | 352 |
| LpnPI | CCDG | 7 cut(s) | 41, 83, 201, 222, 249, 363, 392 |
| LweI | GCATC | 1 cut(s) | 200 |
| MaeI | CTAG | 3 cut(s) | 103, 232, 444 |
| MaeII | ACGT | 2 cut(s) | 241, 812 |
| MaeIII | GTNAC | 4 cut(s) | 423, 635, 771, 992 |
| MalI | GATC | 6 cut(s) | 70, 139, 651, 734, 1051, 1063 |
| MboI | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| MboII | GAAGA | 9 cut(s) | 381, 384, 414, 587, 728, 814, 996, 1059, 1068 |
| MflI | RGATCY | 1 cut(s) | 732 |
| MhlI | GDGCHC | 2 cut(s) | 965, 980 |
| MlsI | TGGCCA | 1 cut(s) | 844 |
| MluCI | AATT | 5 cut(s) | 408, 534, 725, 764, 988 |
| MluNI | TGGCCA | 1 cut(s) | 844 |
| Mly113I | GGCGCC | 1 cut(s) | 856 |
| MlyI | GAGTC | 4 cut(s) | 11, 27, 320, 572 |
| Mox20I | TGGCCA | 1 cut(s) | 844 |
| MroXI | GAANNNNTTC | 1 cut(s) | 511 |
| MscI | TGGCCA | 1 cut(s) | 844 |
| MseI | TTAA | 2 cut(s) | 520, 528 |
| MslI | CAYNNNNRTG | 5 cut(s) | 321, 337, 711, 850, 880 |
| Msp20I | TGGCCA | 1 cut(s) | 844 |
| MspA1I | CMGCKG | 1 cut(s) | 75 |
| MspR9I | CCNGG | 1 cut(s) | 237 |
| Mva1269I | GAATGC | 1 cut(s) | 99 |
| MvaI | CCWGG | 1 cut(s) | 237 |
| MvnI | CGCG | 6 cut(s) | 6, 15, 48, 50, 67, 75 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 12, 56, 273, 294, 1005 |
| NarI | GGCGCC | 1 cut(s) | 856 |
| NdeI | CATATG | 1 cut(s) | 334 |
| NdeII | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| NlaIII | CATG | 4 cut(s) | 434, 666, 796, 849 |
| NlaIV | GGNNCC | 2 cut(s) | 798, 857 |
| NmuCI | GTSAC | 1 cut(s) | 992 |
| NotI | GCGGCCGC | 1 cut(s) | 76 |
| NruI | TCGCGA | 1 cut(s) | 67 |
| PaeR7I | CTCGAG | 1 cut(s) | 225 |
| PagI | TCATGA | 1 cut(s) | 662 |
| PctI | GAATGC | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 511 |
| PfeI | GAWTC | 5 cut(s) | 208, 221, 342, 628, 759 |
| PkrI | GCNGC | 2 cut(s) | 77, 80 |
| PleI | GAGTC | 4 cut(s) | 11, 27, 320, 572 |
| PluTI | GGCGCC | 1 cut(s) | 859 |
| PpsI | GAGTC | 4 cut(s) | 11, 27, 320, 572 |
| Psp6I | CCWGG | 1 cut(s) | 235 |
| PspGI | CCWGG | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 2 cut(s) | 798, 857 |
| PspPI | GGNCC | 1 cut(s) | 106 |
| PsuI | RGATCY | 1 cut(s) | 732 |
| RruI | TCGCGA | 1 cut(s) | 67 |
| RsaI | GTAC | 3 cut(s) | 145, 354, 949 |
| RsaNI | GTAC | 3 cut(s) | 144, 353, 948 |
| RseI | CAYNNNNRTG | 5 cut(s) | 321, 337, 711, 850, 880 |
| SacII | CCGCGG | 1 cut(s) | 76 |
| SaqAI | TTAA | 2 cut(s) | 520, 528 |
| SatI | GCNGC | 2 cut(s) | 76, 79 |
| Sau3AI | GATC | 6 cut(s) | 68, 137, 649, 732, 1049, 1061 |
| Sau96I | GGNCC | 1 cut(s) | 106 |
| ScaI | AGTACT | 1 cut(s) | 949 |
| SchI | GAGTC | 4 cut(s) | 11, 27, 320, 572 |
| ScrFI | CCNGG | 1 cut(s) | 237 |
| SduI | GDGCHC | 2 cut(s) | 965, 980 |
| SfaNI | GCATC | 1 cut(s) | 200 |
| SfcI | CTRYAG | 1 cut(s) | 1065 |
| SfoI | GGCGCC | 1 cut(s) | 857 |
| Sfr274I | CTCGAG | 1 cut(s) | 225 |
| Sfr303I | CCGCGG | 1 cut(s) | 76 |
| SgrBI | CCGCGG | 1 cut(s) | 76 |
| SinI | GGWCC | 1 cut(s) | 106 |
| SlaI | CTCGAG | 1 cut(s) | 225 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 321, 337, 711, 850, 880 |
| SmlI | CTYRAG | 3 cut(s) | 195, 225, 262 |
| SmoI | CTYRAG | 3 cut(s) | 195, 225, 262 |
| Sse9I | AATT | 5 cut(s) | 408, 534, 725, 764, 988 |
| SspDI | GGCGCC | 1 cut(s) | 855 |
| SspMI | CTAG | 3 cut(s) | 103, 232, 444 |
| StyD4I | CCNGG | 1 cut(s) | 235 |
| StyI | CCWWGG | 2 cut(s) | 88, 102 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaiI | ACGT | 2 cut(s) | 244, 815 |
| TaqI | TCGA | 7 cut(s) | 140, 226, 400, 626, 631, 729, 938 |
| TaqII | GACCGA | 1 cut(s) | 123 |
| TasI | AATT | 5 cut(s) | 408, 534, 725, 764, 988 |
| TatI | WGTACW | 1 cut(s) | 947 |
| TauI | GCSGC | 2 cut(s) | 78, 81 |
| TfiI | GAWTC | 5 cut(s) | 208, 221, 342, 628, 759 |
| Tru1I | TTAA | 2 cut(s) | 520, 528 |
| Tru9I | TTAA | 2 cut(s) | 520, 528 |
| TseFI | GTSAC | 1 cut(s) | 992 |
| Tsp45I | GTSAC | 1 cut(s) | 992 |
| TspDTI | ATGAA | 5 cut(s) | 378, 382, 651, 696, 1030 |
| TspGWI | ACGGA | 1 cut(s) | 662 |
| VpaK11BI | GGWCC | 1 cut(s) | 106 |
| XapI | RAATTY | 2 cut(s) | 408, 534 |
| XhoI | CTCGAG | 1 cut(s) | 225 |
| XmaJI | CCTAGG | 1 cut(s) | 102 |
| XmnI | GAANNNNTTC | 1 cut(s) | 511 |
| XspI | CTAG | 3 cut(s) | 103, 232, 444 |
| ZrmI | AGTACT | 1 cut(s) | 949 |