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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 315, 360 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 423 |
| AccB1I | GGYRCC | 1 cut(s) | 557 |
| AciI | CCGC | 1 cut(s) | 684 |
| AclWI | GGATC | 1 cut(s) | 248 |
| AcuI | CTGAAG | 1 cut(s) | 243 |
| AcvI | CACGTG | 1 cut(s) | 497 |
| AcyI | GRCGYC | 1 cut(s) | 558 |
| AdeI | CACNNNGTG | 1 cut(s) | 482 |
| AfaI | GTAC | 1 cut(s) | 220 |
| AfeI | AGCGCT | 2 cut(s) | 63, 74 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 123, 374, 375, 445, 498, 527, 571 |
| AflIII | ACRYGT | 1 cut(s) | 494 |
| AgsI | TTSAA | 4 cut(s) | 112, 321, 598, 655 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 140 |
| AjnI | CCWGG | 1 cut(s) | 444 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 6 cut(s) | 52, 157, 259, 281, 525, 659 |
| AluI | AGCT | 6 cut(s) | 52, 157, 259, 281, 525, 659 |
| Alw21I | GWGCWC | 1 cut(s) | 675 |
| Alw26I | GTCTC | 1 cut(s) | 621 |
| Alw44I | GTGCAC | 1 cut(s) | 671 |
| AlwI | GGATC | 1 cut(s) | 248 |
| Aor51HI | AGCGCT | 2 cut(s) | 63, 74 |
| AoxI | GGCC | 1 cut(s) | 323 |
| ApaLI | GTGCAC | 1 cut(s) | 671 |
| AspA2I | CCTAGG | 1 cut(s) | 569 |
| AspLEI | GCGC | 3 cut(s) | 64, 75, 560 |
| AspS9I | GGNCC | 1 cut(s) | 324 |
| AvrII | CCTAGG | 1 cut(s) | 569 |
| BaeGI | GKGCMC | 1 cut(s) | 675 |
| BanI | GGYRCC | 1 cut(s) | 557 |
| BauI | CACGAG | 1 cut(s) | 244 |
| BbrPI | CACGTG | 1 cut(s) | 497 |
| Bbv12I | GWGCWC | 1 cut(s) | 675 |
| BciT130I | CCWGG | 1 cut(s) | 446 |
| BcoDI | GTCTC | 1 cut(s) | 621 |
| BfaI | CTAG | 3 cut(s) | 65, 522, 570 |
| BfmI | CTRYAG | 2 cut(s) | 276, 642 |
| BfoI | RGCGCY | 3 cut(s) | 65, 76, 561 |
| BisI | GCNGC | 1 cut(s) | 684 |
| BlnI | CCTAGG | 1 cut(s) | 569 |
| BlsI | GCNGC | 1 cut(s) | 685 |
| Bme1390I | CCNGG | 1 cut(s) | 446 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 140 |
| BmgT120I | GGNCC | 1 cut(s) | 324 |
| BmiI | GGNNCC | 2 cut(s) | 392, 559 |
| BmrFI | CCNGG | 1 cut(s) | 446 |
| BmsI | GCATC | 2 cut(s) | 31, 670 |
| BsaAI | YACGTR | 1 cut(s) | 497 |
| BsaHI | GRCGYC | 1 cut(s) | 558 |
| BsaJI | CCNNGG | 2 cut(s) | 540, 569 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 14, 44, 493, 523 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 123, 374, 375, 445, 498, 527, 571 |
| Bse1I | ACTGG | 1 cut(s) | 238 |
| Bse3DI | GCAATG | 2 cut(s) | 88, 493 |
| BseBI | CCWGG | 1 cut(s) | 446 |
| BseDI | CCNNGG | 2 cut(s) | 540, 569 |
| BseGI | GGATG | 2 cut(s) | 46, 685 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 123, 374, 375, 445, 498, 527, 571 |
| BseMI | GCAATG | 2 cut(s) | 88, 493 |
| BseMII | CTCAG | 2 cut(s) | 28, 273 |
| BseNI | ACTGG | 1 cut(s) | 238 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseSI | GKGCMC | 1 cut(s) | 675 |
| BshFI | GGCC | 1 cut(s) | 325 |
| BshNI | GGYRCC | 1 cut(s) | 557 |
| BsiHKAI | GWGCWC | 1 cut(s) | 675 |
| BslFI | GGGAC | 2 cut(s) | 420, 429 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 123, 374, 375, 445, 498, 527, 571 |
| BsmAI | GTCTC | 1 cut(s) | 621 |
| BsmBI | CGTCTC | 1 cut(s) | 621 |
| BsmFI | GGGAC | 2 cut(s) | 420, 429 |
| BsnI | GGCC | 1 cut(s) | 325 |
| Bsp1286I | GDGCHC | 1 cut(s) | 675 |
| Bsp143I | GATC | 2 cut(s) | 33, 240 |
| Bsp19I | CCATGG | 1 cut(s) | 540 |
| BspACI | CCGC | 1 cut(s) | 684 |
| BspANI | GGCC | 1 cut(s) | 325 |
| BspCNI | CTCAG | 2 cut(s) | 27, 274 |
| BspHI | TCATGA | 2 cut(s) | 303, 346 |
| BspLI | GGNNCC | 2 cut(s) | 392, 559 |
| BspPI | GGATC | 1 cut(s) | 248 |
| BspQI | GCTCTTC | 1 cut(s) | 63 |
| BspT107I | GGYRCC | 1 cut(s) | 557 |
| BsrDI | GCAATG | 2 cut(s) | 88, 493 |
| BsrI | ACTGG | 1 cut(s) | 238 |
| BssECI | CCNNGG | 2 cut(s) | 540, 569 |
| BssMI | GATC | 2 cut(s) | 33, 240 |
| BssNI | GRCGYC | 1 cut(s) | 558 |
| BssSI | CACGAG | 1 cut(s) | 244 |
| BssT1I | CCWWGG | 2 cut(s) | 540, 569 |
| Bst2BI | CACGAG | 1 cut(s) | 244 |
| Bst2UI | CCWGG | 1 cut(s) | 446 |
| Bst4CI | ACNGT | 1 cut(s) | 218 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 593 |
| BstACI | GRCGYC | 1 cut(s) | 558 |
| BstBAI | YACGTR | 1 cut(s) | 497 |
| BstDEI | CTNAG | 4 cut(s) | 14, 282, 336, 396 |
| BstDSI | CCRYGG | 1 cut(s) | 540 |
| BstF5I | GGATG | 2 cut(s) | 46, 685 |
| BstH2I | RGCGCY | 3 cut(s) | 65, 76, 561 |
| BstHHI | GCGC | 3 cut(s) | 64, 75, 560 |
| BstKTI | GATC | 2 cut(s) | 36, 243 |
| BstMAI | GTCTC | 1 cut(s) | 621 |
| BstMBI | GATC | 2 cut(s) | 33, 240 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 70, 522 |
| BstNI | CCWGG | 1 cut(s) | 446 |
| BstSCI | CCNGG | 1 cut(s) | 444 |
| BstSFI | CTRYAG | 2 cut(s) | 276, 642 |
| BstSLI | GKGCMC | 1 cut(s) | 675 |
| BsuRI | GGCC | 1 cut(s) | 325 |
| BtgI | CCRYGG | 1 cut(s) | 540 |
| BtsCI | GGATG | 2 cut(s) | 46, 685 |
| CciI | TCATGA | 2 cut(s) | 303, 346 |
| CfoI | GCGC | 3 cut(s) | 64, 75, 560 |
| Cfr13I | GGNCC | 1 cut(s) | 324 |
| Csp6I | GTAC | 1 cut(s) | 219 |
| CviAII | CATG | 7 cut(s) | 118, 290, 304, 347, 410, 479, 541 |
| CviQI | GTAC | 1 cut(s) | 219 |
| DdeI | CTNAG | 4 cut(s) | 14, 282, 336, 396 |
| DinI | GGCGCC | 1 cut(s) | 559 |
| DpnI | GATC | 2 cut(s) | 35, 242 |
| DpnII | GATC | 2 cut(s) | 33, 240 |
| DraIII | CACNNNGTG | 1 cut(s) | 482 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 423 |
| DriI | GACNNNNNGTC | 1 cut(s) | 140 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 423 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 593 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 140 |
| EarI | CTCTTC | 2 cut(s) | 63, 593 |
| Eco130I | CCWWGG | 2 cut(s) | 540, 569 |
| Eco47III | AGCGCT | 2 cut(s) | 63, 74 |
| Eco57I | CTGAAG | 1 cut(s) | 243 |
| Eco72I | CACGTG | 1 cut(s) | 497 |
| EcoRII | CCWGG | 1 cut(s) | 444 |
| EcoT14I | CCWWGG | 2 cut(s) | 540, 569 |
| EgeI | GGCGCC | 1 cut(s) | 559 |
| EheI | GGCGCC | 1 cut(s) | 559 |
| ErhI | CCWWGG | 2 cut(s) | 540, 569 |
| Esp3I | CGTCTC | 1 cut(s) | 621 |
| FaeI | CATG | 7 cut(s) | 121, 293, 307, 350, 413, 482, 544 |
| FaqI | GGGAC | 2 cut(s) | 420, 429 |
| FatI | CATG | 7 cut(s) | 117, 289, 303, 346, 409, 478, 540 |
| FauNDI | CATATG | 1 cut(s) | 583 |
| Fnu4HI | GCNGC | 1 cut(s) | 684 |
| FokI | GGATG | 2 cut(s) | 53, 692 |
| Fsp4HI | GCNGC | 1 cut(s) | 684 |
| FspBI | CTAG | 3 cut(s) | 65, 522, 570 |
| GlaI | GCGC | 3 cut(s) | 63, 74, 559 |
| GluI | GCNGC | 1 cut(s) | 684 |
| HaeII | RGCGCY | 3 cut(s) | 65, 76, 561 |
| HaeIII | GGCC | 1 cut(s) | 325 |
| HhaI | GCGC | 3 cut(s) | 64, 75, 560 |
| Hin1I | GRCGYC | 1 cut(s) | 558 |
| Hin1II | CATG | 7 cut(s) | 121, 293, 307, 350, 413, 482, 544 |
| Hin6I | GCGC | 3 cut(s) | 62, 73, 558 |
| HinP1I | GCGC | 3 cut(s) | 62, 73, 558 |
| HinfI | GANTC | 2 cut(s) | 92, 424 |
| Hpy166II | GTNNAC | 2 cut(s) | 134, 673 |
| Hpy188I | TCNGA | 1 cut(s) | 17 |
| Hpy188III | TCNNGA | 3 cut(s) | 244, 304, 347 |
| Hpy8I | GTNNAC | 2 cut(s) | 134, 673 |
| HpyAV | CCTTC | 4 cut(s) | 190, 231, 365, 443 |
| HpyCH4III | ACNGT | 1 cut(s) | 218 |
| HpyCH4IV | ACGT | 4 cut(s) | 418, 496, 577, 630 |
| HpyCH4V | TGCA | 6 cut(s) | 44, 365, 381, 459, 587, 673 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 70, 522 |
| HpyF3I | CTNAG | 4 cut(s) | 14, 282, 336, 396 |
| HpySE526I | ACGT | 4 cut(s) | 418, 496, 577, 630 |
| Hsp92I | GRCGYC | 1 cut(s) | 558 |
| Hsp92II | CATG | 7 cut(s) | 121, 293, 307, 350, 413, 482, 544 |
| HspAI | GCGC | 3 cut(s) | 62, 73, 558 |
| KasI | GGCGCC | 1 cut(s) | 557 |
| Kzo9I | GATC | 2 cut(s) | 33, 240 |
| LguI | GCTCTTC | 1 cut(s) | 63 |
| LpnPI | CCDG | 5 cut(s) | 117, 153, 219, 431, 458 |
| LweI | GCATC | 2 cut(s) | 31, 670 |
| MaeI | CTAG | 3 cut(s) | 65, 522, 570 |
| MaeII | ACGT | 4 cut(s) | 418, 496, 577, 630 |
| MaeIII | GTNAC | 1 cut(s) | 142 |
| MalI | GATC | 2 cut(s) | 35, 242 |
| MboI | GATC | 2 cut(s) | 33, 240 |
| MboII | GAAGA | 6 cut(s) | 80, 610, 617, 620, 623, 626 |
| MfeI | CAATTG | 1 cut(s) | 593 |
| MhlI | GDGCHC | 1 cut(s) | 675 |
| MluCI | AATT | 6 cut(s) | 159, 310, 316, 355, 454, 593 |
| Mly113I | GGCGCC | 1 cut(s) | 558 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MseI | TTAA | 1 cut(s) | 633 |
| MslI | CAYNNNNRTG | 4 cut(s) | 200, 302, 552, 678 |
| MspR9I | CCNGG | 1 cut(s) | 446 |
| MunI | CAATTG | 1 cut(s) | 593 |
| MvaI | CCWGG | 1 cut(s) | 446 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 70, 522 |
| NarI | GGCGCC | 1 cut(s) | 558 |
| NcoI | CCATGG | 1 cut(s) | 540 |
| NdeI | CATATG | 1 cut(s) | 583 |
| NdeII | GATC | 2 cut(s) | 33, 240 |
| NlaIII | CATG | 7 cut(s) | 121, 293, 307, 350, 413, 482, 544 |
| NlaIV | GGNNCC | 2 cut(s) | 392, 559 |
| NmuCI | GTSAC | 1 cut(s) | 142 |
| PagI | TCATGA | 2 cut(s) | 303, 346 |
| PciSI | GCTCTTC | 1 cut(s) | 63 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 1 cut(s) | 685 |
| PleI | GAGTC | 1 cut(s) | 432 |
| PluTI | GGCGCC | 1 cut(s) | 561 |
| PmaCI | CACGTG | 1 cut(s) | 497 |
| PmlI | CACGTG | 1 cut(s) | 497 |
| PpsI | GAGTC | 1 cut(s) | 432 |
| Ppu21I | YACGTR | 1 cut(s) | 497 |
| PsiI | TTATAA | 2 cut(s) | 315, 360 |
| Psp6I | CCWGG | 1 cut(s) | 444 |
| PspCI | CACGTG | 1 cut(s) | 497 |
| PspGI | CCWGG | 1 cut(s) | 444 |
| PspN4I | GGNNCC | 2 cut(s) | 392, 559 |
| PspPI | GGNCC | 1 cut(s) | 324 |
| RsaI | GTAC | 1 cut(s) | 220 |
| RsaNI | GTAC | 1 cut(s) | 219 |
| RseI | CAYNNNNRTG | 4 cut(s) | 200, 302, 552, 678 |
| SapI | GCTCTTC | 1 cut(s) | 63 |
| SaqAI | TTAA | 1 cut(s) | 633 |
| SatI | GCNGC | 1 cut(s) | 684 |
| Sau3AI | GATC | 2 cut(s) | 33, 240 |
| Sau96I | GGNCC | 1 cut(s) | 324 |
| SchI | GAGTC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 1 cut(s) | 446 |
| SduI | GDGCHC | 1 cut(s) | 675 |
| SfaNI | GCATC | 2 cut(s) | 31, 670 |
| SfcI | CTRYAG | 2 cut(s) | 276, 642 |
| SfoI | GGCGCC | 1 cut(s) | 559 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 200, 302, 552, 678 |
| Sse9I | AATT | 6 cut(s) | 159, 310, 316, 355, 454, 593 |
| SsiI | CCGC | 1 cut(s) | 684 |
| SspDI | GGCGCC | 1 cut(s) | 557 |
| SspMI | CTAG | 3 cut(s) | 65, 522, 570 |
| StyD4I | CCNGG | 1 cut(s) | 444 |
| StyI | CCWWGG | 2 cut(s) | 540, 569 |
| TaaI | ACNGT | 1 cut(s) | 218 |
| TaiI | ACGT | 4 cut(s) | 421, 499, 580, 633 |
| TaqI | TCGA | 1 cut(s) | 32 |
| TasI | AATT | 6 cut(s) | 159, 310, 316, 355, 454, 593 |
| TauI | GCSGC | 1 cut(s) | 686 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 1 cut(s) | 633 |
| Tru9I | TTAA | 1 cut(s) | 633 |
| TseFI | GTSAC | 1 cut(s) | 142 |
| Tsp45I | GTSAC | 1 cut(s) | 142 |
| TspDTI | ATGAA | 3 cut(s) | 242, 335, 681 |
| VneI | GTGCAC | 1 cut(s) | 671 |
| XmaJI | CCTAGG | 1 cut(s) | 569 |
| XspI | CTAG | 3 cut(s) | 65, 522, 570 |