No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 30 - 164 | 6.3e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 79 |
| AclWI | GGATC | 2 cut(s) | 548, 618 |
| AcsI | RAATTY | 1 cut(s) | 425 |
| AfaI | GTAC | 1 cut(s) | 245 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 677 |
| AgsI | TTSAA | 1 cut(s) | 373 |
| AjiI | CACGTC | 1 cut(s) | 133 |
| AjnI | CCWGG | 2 cut(s) | 105, 126 |
| AleI | CACNNNNGTG | 1 cut(s) | 363 |
| AluBI | AGCT | 4 cut(s) | 152, 158, 559, 569 |
| AluI | AGCT | 4 cut(s) | 152, 158, 559, 569 |
| Alw26I | GTCTC | 2 cut(s) | 289, 493 |
| AlwI | GGATC | 2 cut(s) | 548, 618 |
| Ama87I | CYCGRG | 1 cut(s) | 116 |
| ApeKI | GCWGC | 1 cut(s) | 176 |
| ApoI | RAATTY | 1 cut(s) | 425 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 642 |
| AspLEI | GCGC | 1 cut(s) | 684 |
| AsuHPI | GGTGA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 116 |
| BaeGI | GKGCMC | 1 cut(s) | 670 |
| BbsI | GAAGAC | 1 cut(s) | 270 |
| BbvI | GCAGC | 1 cut(s) | 188 |
| BccI | CCATC | 4 cut(s) | 92, 339, 493, 531 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 512, 546 |
| BciT130I | CCWGG | 2 cut(s) | 107, 128 |
| BcoDI | GTCTC | 2 cut(s) | 289, 493 |
| BfaI | CTAG | 3 cut(s) | 123, 270, 335 |
| BfmI | CTRYAG | 2 cut(s) | 141, 531 |
| BfoI | RGCGCY | 1 cut(s) | 685 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 185 |
| BisI | GCNGC | 1 cut(s) | 177 |
| BlsI | GCNGC | 1 cut(s) | 178 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 128 |
| BmeT110I | CYCGRG | 1 cut(s) | 116 |
| BmgBI | CACGTC | 1 cut(s) | 133 |
| BmrFI | CCNGG | 2 cut(s) | 107, 128 |
| BpiI | GAAGAC | 1 cut(s) | 270 |
| BpmI | CTGGAG | 1 cut(s) | 224 |
| BpuEI | CTTGAG | 1 cut(s) | 138 |
| Bsa29I | ATCGAT | 1 cut(s) | 522 |
| BsaI | GGTCTC | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 1 cut(s) | 627 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 677 |
| Bse1I | ACTGG | 2 cut(s) | 49, 241 |
| BseBI | CCWGG | 2 cut(s) | 107, 128 |
| BseCI | ATCGAT | 1 cut(s) | 522 |
| BseDI | CCNNGG | 1 cut(s) | 627 |
| BseGI | GGATG | 4 cut(s) | 207, 235, 542, 597 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 677 |
| BseNI | ACTGG | 2 cut(s) | 49, 241 |
| BseSI | GKGCMC | 1 cut(s) | 670 |
| BseXI | GCAGC | 1 cut(s) | 188 |
| BshVI | ATCGAT | 1 cut(s) | 522 |
| BsiHKCI | CYCGRG | 1 cut(s) | 116 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 677 |
| BsmAI | GTCTC | 2 cut(s) | 289, 493 |
| BsmBI | CGTCTC | 1 cut(s) | 493 |
| Bso31I | GGTCTC | 1 cut(s) | 289 |
| BsoBI | CYCGRG | 1 cut(s) | 116 |
| Bsp1286I | GDGCHC | 1 cut(s) | 670 |
| Bsp143I | GATC | 3 cut(s) | 441, 540, 623 |
| Bsp19I | CCATGG | 1 cut(s) | 627 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspDI | ATCGAT | 1 cut(s) | 522 |
| BspHI | TCATGA | 1 cut(s) | 553 |
| BspMAI | CTGCAG | 1 cut(s) | 535 |
| BspPI | GGATC | 2 cut(s) | 548, 618 |
| BspTNI | GGTCTC | 1 cut(s) | 289 |
| BsrI | ACTGG | 2 cut(s) | 49, 241 |
| BssECI | CCNNGG | 1 cut(s) | 627 |
| BssMI | GATC | 3 cut(s) | 441, 540, 623 |
| BssT1I | CCWWGG | 1 cut(s) | 627 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 128 |
| Bst4CI | ACNGT | 1 cut(s) | 142 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 150 |
| BstDEI | CTNAG | 3 cut(s) | 181, 507, 672 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 675 |
| BstF5I | GGATG | 4 cut(s) | 207, 235, 542, 597 |
| BstH2I | RGCGCY | 1 cut(s) | 685 |
| BstHHI | GCGC | 1 cut(s) | 684 |
| BstKTI | GATC | 3 cut(s) | 444, 543, 626 |
| BstMAI | GTCTC | 2 cut(s) | 289, 493 |
| BstMBI | GATC | 3 cut(s) | 441, 540, 623 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 164, 173, 185 |
| BstNI | CCWGG | 2 cut(s) | 107, 128 |
| BstSCI | CCNGG | 2 cut(s) | 105, 126 |
| BstSFI | CTRYAG | 2 cut(s) | 141, 531 |
| BstSLI | GKGCMC | 1 cut(s) | 670 |
| BstV1I | GCAGC | 1 cut(s) | 188 |
| BstV2I | GAAGAC | 1 cut(s) | 270 |
| BstX2I | RGATCY | 1 cut(s) | 623 |
| BstYI | RGATCY | 1 cut(s) | 623 |
| Bsu15I | ATCGAT | 1 cut(s) | 522 |
| BsuTUI | ATCGAT | 1 cut(s) | 522 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtgZI | GCGATG | 1 cut(s) | 467 |
| BtrI | CACGTC | 1 cut(s) | 133 |
| BtsCI | GGATG | 4 cut(s) | 207, 235, 542, 597 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 150 |
| CciI | TCATGA | 1 cut(s) | 553 |
| CfoI | GCGC | 1 cut(s) | 684 |
| ClaI | ATCGAT | 1 cut(s) | 522 |
| Csp6I | GTAC | 1 cut(s) | 244 |
| CviAII | CATG | 3 cut(s) | 554, 590, 628 |
| CviQI | GTAC | 1 cut(s) | 244 |
| DdeI | CTNAG | 3 cut(s) | 181, 507, 672 |
| DpnI | GATC | 3 cut(s) | 443, 542, 625 |
| DpnII | GATC | 3 cut(s) | 441, 540, 623 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 627 |
| Eco31I | GGTCTC | 1 cut(s) | 289 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 116 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 675 |
| EcoRI | GAATTC | 1 cut(s) | 425 |
| EcoRII | CCWGG | 2 cut(s) | 105, 126 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 627 |
| ErhI | CCWWGG | 1 cut(s) | 627 |
| Esp3I | CGTCTC | 1 cut(s) | 493 |
| FaeI | CATG | 3 cut(s) | 557, 593, 631 |
| FatI | CATG | 3 cut(s) | 553, 589, 627 |
| FauNDI | CATATG | 1 cut(s) | 225 |
| Fnu4HI | GCNGC | 1 cut(s) | 177 |
| FokI | GGATG | 4 cut(s) | 194, 242, 549, 584 |
| Fsp4HI | GCNGC | 1 cut(s) | 177 |
| FspBI | CTAG | 3 cut(s) | 123, 270, 335 |
| GlaI | GCGC | 1 cut(s) | 683 |
| GluI | GCNGC | 1 cut(s) | 177 |
| GsuI | CTGGAG | 1 cut(s) | 224 |
| HaeII | RGCGCY | 1 cut(s) | 685 |
| HhaI | GCGC | 1 cut(s) | 684 |
| Hin1II | CATG | 3 cut(s) | 557, 593, 631 |
| Hin6I | GCGC | 1 cut(s) | 682 |
| HinP1I | GCGC | 1 cut(s) | 682 |
| HindIII | AAGCTT | 1 cut(s) | 156 |
| HinfI | GANTC | 6 cut(s) | 102, 217, 233, 317, 519, 650 |
| HphI | GGTGA | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 1 cut(s) | 397 |
| Hpy188III | TCNNGA | 7 cut(s) | 51, 71, 116, 383, 554, 621, 647 |
| HpyAV | CCTTC | 2 cut(s) | 267, 490 |
| HpyCH4III | ACNGT | 1 cut(s) | 142 |
| HpyCH4IV | ACGT | 2 cut(s) | 132, 309 |
| HpyCH4V | TGCA | 3 cut(s) | 408, 494, 533 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 164, 173, 185 |
| HpyF3I | CTNAG | 3 cut(s) | 181, 507, 672 |
| HpySE526I | ACGT | 2 cut(s) | 132, 309 |
| Hsp92II | CATG | 3 cut(s) | 557, 593, 631 |
| HspAI | GCGC | 1 cut(s) | 682 |
| Kzo9I | GATC | 3 cut(s) | 441, 540, 623 |
| LmnI | GCTCC | 3 cut(s) | 34, 243, 566 |
| Lsp1109I | GCAGC | 1 cut(s) | 188 |
| MaeI | CTAG | 3 cut(s) | 123, 270, 335 |
| MaeII | ACGT | 2 cut(s) | 132, 309 |
| MaeIII | GTNAC | 3 cut(s) | 5, 314, 526 |
| MalI | GATC | 3 cut(s) | 443, 542, 625 |
| MboI | GATC | 3 cut(s) | 441, 540, 623 |
| MboII | GAAGA | 3 cut(s) | 272, 275, 619 |
| MflI | RGATCY | 1 cut(s) | 623 |
| MhlI | GDGCHC | 1 cut(s) | 670 |
| MluCI | AATT | 5 cut(s) | 17, 111, 425, 616, 655 |
| MlyI | GAGTC | 2 cut(s) | 211, 311 |
| MnlI | CCTC | 3 cut(s) | 178, 365, 671 |
| MroXI | GAANNNNTTC | 1 cut(s) | 642 |
| MseI | TTAA | 2 cut(s) | 411, 419 |
| MslI | CAYNNNNRTG | 4 cut(s) | 212, 228, 363, 602 |
| MspR9I | CCNGG | 2 cut(s) | 107, 128 |
| MvaI | CCWGG | 2 cut(s) | 107, 128 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 164, 173, 185 |
| NcoI | CCATGG | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 225 |
| NdeII | GATC | 3 cut(s) | 441, 540, 623 |
| NlaIII | CATG | 3 cut(s) | 557, 593, 631 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| OliI | CACNNNNGTG | 1 cut(s) | 363 |
| PaeR7I | CTCGAG | 1 cut(s) | 116 |
| PagI | TCATGA | 1 cut(s) | 553 |
| PdmI | GAANNNNTTC | 1 cut(s) | 642 |
| PfeI | GAWTC | 4 cut(s) | 102, 233, 519, 650 |
| PkrI | GCNGC | 1 cut(s) | 178 |
| PleI | GAGTC | 2 cut(s) | 211, 311 |
| PpsI | GAGTC | 2 cut(s) | 211, 311 |
| Psp6I | CCWGG | 2 cut(s) | 105, 126 |
| PspGI | CCWGG | 2 cut(s) | 105, 126 |
| PstI | CTGCAG | 1 cut(s) | 535 |
| PsuI | RGATCY | 1 cut(s) | 623 |
| RsaI | GTAC | 1 cut(s) | 245 |
| RsaNI | GTAC | 1 cut(s) | 244 |
| RseI | CAYNNNNRTG | 4 cut(s) | 212, 228, 363, 602 |
| SaqAI | TTAA | 2 cut(s) | 411, 419 |
| SatI | GCNGC | 1 cut(s) | 177 |
| Sau3AI | GATC | 3 cut(s) | 441, 540, 623 |
| SchI | GAGTC | 2 cut(s) | 211, 311 |
| ScrFI | CCNGG | 2 cut(s) | 107, 128 |
| SduI | GDGCHC | 1 cut(s) | 670 |
| SfcI | CTRYAG | 2 cut(s) | 141, 531 |
| Sfr274I | CTCGAG | 1 cut(s) | 116 |
| SlaI | CTCGAG | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 212, 228, 363, 602 |
| SmlI | CTYRAG | 2 cut(s) | 116, 153 |
| SmoI | CTYRAG | 2 cut(s) | 116, 153 |
| Sse9I | AATT | 5 cut(s) | 17, 111, 425, 616, 655 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 3 cut(s) | 123, 270, 335 |
| StyD4I | CCNGG | 2 cut(s) | 105, 126 |
| StyI | CCWWGG | 1 cut(s) | 627 |
| TaaI | ACNGT | 1 cut(s) | 142 |
| TaiI | ACGT | 2 cut(s) | 135, 312 |
| TaqI | TCGA | 4 cut(s) | 117, 517, 522, 620 |
| TasI | AATT | 5 cut(s) | 17, 111, 425, 616, 655 |
| TfiI | GAWTC | 4 cut(s) | 102, 233, 519, 650 |
| Tru1I | TTAA | 2 cut(s) | 411, 419 |
| Tru9I | TTAA | 2 cut(s) | 411, 419 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| TseI | GCWGC | 1 cut(s) | 176 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspDTI | ATGAA | 4 cut(s) | 269, 273, 542, 587 |
| TspGWI | ACGGA | 1 cut(s) | 302 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 675 |
| XapI | RAATTY | 1 cut(s) | 425 |
| XhoI | CTCGAG | 1 cut(s) | 116 |
| XmnI | GAANNNNTTC | 1 cut(s) | 642 |
| XspI | CTAG | 3 cut(s) | 123, 270, 335 |