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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 500 |
| AccII | CGCG | 1 cut(s) | 327 |
| AciI | CCGC | 1 cut(s) | 421 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcoI | YGGCCR | 1 cut(s) | 487 |
| AcsI | RAATTY | 2 cut(s) | 200, 640 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AgsI | TTSAA | 2 cut(s) | 148, 538 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 2 cut(s) | 452, 623 |
| AluI | AGCT | 2 cut(s) | 452, 623 |
| Alw21I | GWGCWC | 2 cut(s) | 454, 625 |
| Alw26I | GTCTC | 2 cut(s) | 64, 268 |
| AlwI | GGATC | 1 cut(s) | 323 |
| AoxI | GGCC | 1 cut(s) | 487 |
| ApoI | RAATTY | 2 cut(s) | 200, 640 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AspLEI | GCGC | 1 cut(s) | 329 |
| AsuII | TTCGAA | 1 cut(s) | 638 |
| BaeGI | GKGCMC | 1 cut(s) | 610 |
| BalI | TGGCCA | 1 cut(s) | 489 |
| BanI | GGYRCC | 1 cut(s) | 500 |
| BanII | GRGCYC | 3 cut(s) | 345, 454, 625 |
| BauI | CACGAG | 1 cut(s) | 624 |
| BbsI | GAAGAC | 2 cut(s) | 45, 248 |
| Bbv12I | GWGCWC | 2 cut(s) | 454, 625 |
| BccI | CCATC | 3 cut(s) | 114, 268, 528 |
| BclI | TGATCA | 1 cut(s) | 598 |
| BcoDI | GTCTC | 2 cut(s) | 64, 268 |
| BfaI | CTAG | 2 cut(s) | 110, 387 |
| BfmI | CTRYAG | 1 cut(s) | 306 |
| BmiI | GGNNCC | 2 cut(s) | 344, 502 |
| BmsI | GCATC | 1 cut(s) | 361 |
| BpiI | GAAGAC | 2 cut(s) | 45, 248 |
| BpmI | CTGGAG | 1 cut(s) | 28 |
| Bpu14I | TTCGAA | 1 cut(s) | 638 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseGI | GGATG | 3 cut(s) | 10, 376, 386 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BseSI | GKGCMC | 1 cut(s) | 610 |
| Bsh1236I | CGCG | 1 cut(s) | 327 |
| BshFI | GGCC | 1 cut(s) | 489 |
| BshNI | GGYRCC | 1 cut(s) | 500 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BsiHKAI | GWGCWC | 2 cut(s) | 454, 625 |
| BsmAI | GTCTC | 2 cut(s) | 64, 268 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsnI | GGCC | 1 cut(s) | 489 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp119I | TTCGAA | 1 cut(s) | 638 |
| Bsp1286I | GDGCHC | 4 cut(s) | 345, 454, 610, 625 |
| Bsp143I | GATC | 4 cut(s) | 216, 315, 598, 667 |
| BspACI | CCGC | 1 cut(s) | 421 |
| BspANI | GGCC | 1 cut(s) | 489 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspFNI | CGCG | 1 cut(s) | 327 |
| BspLI | GGNNCC | 2 cut(s) | 344, 502 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspQI | GCTCTTC | 1 cut(s) | 442 |
| BspT104I | TTCGAA | 1 cut(s) | 638 |
| BspT107I | GGYRCC | 1 cut(s) | 500 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssMI | GATC | 4 cut(s) | 216, 315, 598, 667 |
| BssSI | CACGAG | 1 cut(s) | 624 |
| Bst2BI | CACGAG | 1 cut(s) | 624 |
| Bst4CI | ACNGT | 1 cut(s) | 140 |
| Bst6I | CTCTTC | 1 cut(s) | 442 |
| BstBI | TTCGAA | 1 cut(s) | 638 |
| BstDEI | CTNAG | 4 cut(s) | 282, 333, 365, 513 |
| BstEII | GGTNACC | 1 cut(s) | 416 |
| BstF5I | GGATG | 3 cut(s) | 10, 376, 386 |
| BstFNI | CGCG | 1 cut(s) | 327 |
| BstHHI | GCGC | 1 cut(s) | 329 |
| BstKTI | GATC | 4 cut(s) | 219, 318, 601, 670 |
| BstMAI | GTCTC | 2 cut(s) | 64, 268 |
| BstMBI | GATC | 4 cut(s) | 216, 315, 598, 667 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 349 |
| BstPI | GGTNACC | 1 cut(s) | 416 |
| BstSFI | CTRYAG | 1 cut(s) | 306 |
| BstSLI | GKGCMC | 1 cut(s) | 610 |
| BstUI | CGCG | 1 cut(s) | 327 |
| BstV2I | GAAGAC | 2 cut(s) | 45, 248 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 497 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuRI | GGCC | 1 cut(s) | 489 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 3 cut(s) | 10, 376, 386 |
| CfoI | GCGC | 1 cut(s) | 329 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 4 cut(s) | 97, 491, 656, 665 |
| CviJI | RGCY | 7 cut(s) | 129, 343, 433, 452, 489, 519, 623 |
| CviKI_1 | RGCY | 7 cut(s) | 129, 343, 433, 452, 489, 519, 623 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 4 cut(s) | 282, 333, 365, 513 |
| DpnI | GATC | 4 cut(s) | 218, 317, 600, 669 |
| DpnII | GATC | 4 cut(s) | 216, 315, 598, 667 |
| EaeI | YGGCCR | 1 cut(s) | 487 |
| Eam1104I | CTCTTC | 1 cut(s) | 442 |
| EarI | CTCTTC | 1 cut(s) | 442 |
| Ecl136II | GAGCTC | 2 cut(s) | 452, 623 |
| Eco24I | GRGCYC | 3 cut(s) | 345, 454, 625 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| Eco53kI | GAGCTC | 2 cut(s) | 452, 623 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| Eco91I | GGTNACC | 1 cut(s) | 416 |
| EcoICRI | GAGCTC | 2 cut(s) | 452, 623 |
| EcoO65I | GGTNACC | 1 cut(s) | 416 |
| EcoRI | GAATTC | 2 cut(s) | 200, 640 |
| EcoT38I | GRGCYC | 3 cut(s) | 345, 454, 625 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 4 cut(s) | 100, 494, 659, 668 |
| FatI | CATG | 4 cut(s) | 96, 490, 655, 664 |
| FbaI | TGATCA | 1 cut(s) | 598 |
| FokI | GGATG | 3 cut(s) | 17, 383, 393 |
| FriOI | GRGCYC | 3 cut(s) | 345, 454, 625 |
| FspBI | CTAG | 2 cut(s) | 110, 387 |
| GlaI | GCGC | 1 cut(s) | 328 |
| GsuI | CTGGAG | 1 cut(s) | 28 |
| HaeIII | GGCC | 1 cut(s) | 489 |
| HhaI | GCGC | 1 cut(s) | 329 |
| Hin1II | CATG | 4 cut(s) | 100, 494, 659, 668 |
| Hin6I | GCGC | 1 cut(s) | 327 |
| HinP1I | GCGC | 1 cut(s) | 327 |
| HinfI | GANTC | 7 cut(s) | 8, 41, 92, 244, 294, 397, 442 |
| Hpy166II | GTNNAC | 1 cut(s) | 392 |
| Hpy188I | TCNGA | 1 cut(s) | 172 |
| Hpy188III | TCNNGA | 3 cut(s) | 45, 378, 626 |
| Hpy8I | GTNNAC | 1 cut(s) | 392 |
| HpyAV | CCTTC | 3 cut(s) | 42, 265, 407 |
| HpyCH4III | ACNGT | 1 cut(s) | 140 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 457 |
| HpyCH4V | TGCA | 1 cut(s) | 269 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 349 |
| HpyF3I | CTNAG | 4 cut(s) | 282, 333, 365, 513 |
| HpySE526I | ACGT | 2 cut(s) | 84, 457 |
| Hsp92II | CATG | 4 cut(s) | 100, 494, 659, 668 |
| HspAI | GCGC | 1 cut(s) | 327 |
| Ksp22I | TGATCA | 1 cut(s) | 598 |
| Kzo9I | GATC | 4 cut(s) | 216, 315, 598, 667 |
| LguI | GCTCTTC | 1 cut(s) | 442 |
| LmnI | GCTCC | 1 cut(s) | 348 |
| LpnPI | CCDG | 4 cut(s) | 29, 58, 363, 471 |
| LweI | GCATC | 1 cut(s) | 361 |
| MaeI | CTAG | 2 cut(s) | 110, 387 |
| MaeII | ACGT | 2 cut(s) | 84, 457 |
| MaeIII | GTNAC | 4 cut(s) | 80, 89, 301, 416 |
| MalI | GATC | 4 cut(s) | 218, 317, 600, 669 |
| MboI | GATC | 4 cut(s) | 216, 315, 598, 667 |
| MboII | GAAGA | 6 cut(s) | 50, 80, 253, 459, 641, 662 |
| MhlI | GDGCHC | 4 cut(s) | 345, 454, 610, 625 |
| MlsI | TGGCCA | 1 cut(s) | 489 |
| MluCI | AATT | 2 cut(s) | 200, 640 |
| MluNI | TGGCCA | 1 cut(s) | 489 |
| MlyI | GAGTC | 3 cut(s) | 35, 86, 238 |
| MmeI | TCCRAC | 1 cut(s) | 640 |
| MnlI | CCTC | 7 cut(s) | 140, 332, 340, 463, 467, 493, 555 |
| Mox20I | TGGCCA | 1 cut(s) | 489 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MscI | TGGCCA | 1 cut(s) | 489 |
| MseI | TTAA | 2 cut(s) | 186, 194 |
| MslI | CAYNNNNRTG | 2 cut(s) | 495, 525 |
| Msp20I | TGGCCA | 1 cut(s) | 489 |
| MvnI | CGCG | 1 cut(s) | 327 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 349 |
| NdeII | GATC | 4 cut(s) | 216, 315, 598, 667 |
| NlaIII | CATG | 4 cut(s) | 100, 494, 659, 668 |
| NlaIV | GGNNCC | 2 cut(s) | 344, 502 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| NspV | TTCGAA | 1 cut(s) | 638 |
| PciSI | GCTCTTC | 1 cut(s) | 442 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 4 cut(s) | 8, 294, 397, 442 |
| PleI | GAGTC | 3 cut(s) | 35, 86, 238 |
| PpsI | GAGTC | 3 cut(s) | 35, 86, 238 |
| Psp124BI | GAGCTC | 2 cut(s) | 454, 625 |
| PspEI | GGTNACC | 1 cut(s) | 416 |
| PspN4I | GGNNCC | 2 cut(s) | 344, 502 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| RseI | CAYNNNNRTG | 2 cut(s) | 495, 525 |
| SacI | GAGCTC | 2 cut(s) | 454, 625 |
| SapI | GCTCTTC | 1 cut(s) | 442 |
| SaqAI | TTAA | 2 cut(s) | 186, 194 |
| Sau3AI | GATC | 4 cut(s) | 216, 315, 598, 667 |
| SchI | GAGTC | 3 cut(s) | 35, 86, 238 |
| SduI | GDGCHC | 4 cut(s) | 345, 454, 610, 625 |
| SetI | ASST | 7 cut(s) | 53, 87, 257, 418, 454, 460, 625 |
| SfaNI | GCATC | 1 cut(s) | 361 |
| SfcI | CTRYAG | 1 cut(s) | 306 |
| SfuI | TTCGAA | 1 cut(s) | 638 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 495, 525 |
| Sse9I | AATT | 2 cut(s) | 200, 640 |
| SsiI | CCGC | 1 cut(s) | 421 |
| SspMI | CTAG | 2 cut(s) | 110, 387 |
| SstI | GAGCTC | 2 cut(s) | 454, 625 |
| TaaI | ACNGT | 1 cut(s) | 140 |
| TaiI | ACGT | 2 cut(s) | 87, 460 |
| TaqI | TCGA | 5 cut(s) | 66, 292, 297, 445, 638 |
| TasI | AATT | 2 cut(s) | 200, 640 |
| TfiI | GAWTC | 4 cut(s) | 8, 294, 397, 442 |
| Tru1I | TTAA | 2 cut(s) | 186, 194 |
| Tru9I | TTAA | 2 cut(s) | 186, 194 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 3 cut(s) | 44, 644, 662 |
| TspGWI | ACGGA | 2 cut(s) | 328, 454 |
| XapI | RAATTY | 2 cut(s) | 200, 640 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 2 cut(s) | 110, 387 |