No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1271 |
| AccB1I | GGYRCC | 3 cut(s) | 29, 162, 1017 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 360 |
| AccII | CGCG | 1 cut(s) | 1002 |
| AclI | AACGTT | 1 cut(s) | 861 |
| AclWI | GGATC | 6 cut(s) | 133, 884, 954, 1394, 1406, 1419 |
| AcoI | YGGCCR | 1 cut(s) | 199 |
| AcsI | RAATTY | 1 cut(s) | 378 |
| AcyI | GRCGYC | 2 cut(s) | 163, 1018 |
| AfaI | GTAC | 1 cut(s) | 605 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 177, 360, 1013, 1316 |
| AgeI | ACCGGT | 2 cut(s) | 156, 334 |
| AgsI | TTSAA | 6 cut(s) | 130, 709, 749, 1216, 1371, 1425 |
| AjiI | CACGTC | 4 cut(s) | 272, 295, 318, 460 |
| AjnI | CCWGG | 3 cut(s) | 383, 429, 453 |
| AleI | CACNNNNGTG | 1 cut(s) | 785 |
| Alw21I | GWGCWC | 2 cut(s) | 17, 897 |
| Alw26I | GTCTC | 3 cut(s) | 428, 829, 1292 |
| AlwI | GGATC | 6 cut(s) | 133, 884, 954, 1394, 1406, 1419 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 253 |
| AoxI | GGCC | 3 cut(s) | 199, 417, 1145 |
| ApeKI | GCWGC | 2 cut(s) | 225, 503 |
| ApoI | RAATTY | 1 cut(s) | 378 |
| AsiGI | ACCGGT | 2 cut(s) | 156, 334 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 738 |
| AspLEI | GCGC | 4 cut(s) | 165, 291, 1004, 1020 |
| AspS9I | GGNCC | 3 cut(s) | 282, 1064, 1146 |
| AsuC2I | CCSGG | 1 cut(s) | 179 |
| AvaII | GGWCC | 2 cut(s) | 282, 1064 |
| BalI | TGGCCA | 1 cut(s) | 201 |
| BamHI | GGATCC | 1 cut(s) | 1411 |
| BanI | GGYRCC | 3 cut(s) | 29, 162, 1017 |
| BanII | GRGCYC | 2 cut(s) | 17, 897 |
| BbsI | GAAGAC | 4 cut(s) | 627, 809, 1223, 1297 |
| Bbv12I | GWGCWC | 2 cut(s) | 17, 897 |
| BbvI | GCAGC | 2 cut(s) | 237, 515 |
| BccI | CCATC | 6 cut(s) | 222, 416, 539, 675, 829, 1318 |
| BceAI | ACGGC | 1 cut(s) | 1160 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 60, 94 |
| BciT130I | CCWGG | 3 cut(s) | 385, 431, 455 |
| BciVI | GTATCC | 1 cut(s) | 1039 |
| BcnI | CCSGG | 1 cut(s) | 179 |
| BcoDI | GTCTC | 3 cut(s) | 428, 829, 1292 |
| BfaI | CTAG | 6 cut(s) | 450, 671, 1181, 1272, 1448, 1465 |
| BfoI | RGCGCY | 3 cut(s) | 166, 292, 1021 |
| BfuAI | ACCTGC | 1 cut(s) | 1271 |
| BfuI | GTATCC | 1 cut(s) | 1039 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 512 |
| BisI | GCNGC | 3 cut(s) | 226, 504, 1237 |
| BlsI | GCNGC | 3 cut(s) | 227, 505, 1238 |
| Bme1390I | CCNGG | 4 cut(s) | 179, 385, 431, 455 |
| Bme18I | GGWCC | 2 cut(s) | 282, 1064 |
| BmgBI | CACGTC | 4 cut(s) | 272, 295, 318, 460 |
| BmgT120I | GGNCC | 3 cut(s) | 282, 1064, 1146 |
| BmiI | GGNNCC | 6 cut(s) | 31, 164, 284, 1019, 1118, 1413 |
| BmrFI | CCNGG | 4 cut(s) | 179, 385, 431, 455 |
| BmsI | GCATC | 3 cut(s) | 105, 418, 1432 |
| BpiI | GAAGAC | 4 cut(s) | 627, 809, 1223, 1297 |
| BpmI | CTGGAG | 4 cut(s) | 286, 452, 584, 610 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1343 |
| BpuEI | CTTGAG | 3 cut(s) | 398, 428, 465 |
| BpuMI | CCSGG | 1 cut(s) | 179 |
| BsaHI | GRCGYC | 2 cut(s) | 163, 1018 |
| BsaJI | CCNNGG | 1 cut(s) | 963 |
| BsaWI | WCCGGW | 3 cut(s) | 32, 156, 334 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 284, 314 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 177, 360, 1013, 1316 |
| Bse118I | RCCGGY | 2 cut(s) | 156, 334 |
| Bse1I | ACTGG | 2 cut(s) | 209, 601 |
| BseBI | CCWGG | 3 cut(s) | 385, 431, 455 |
| BseDI | CCNNGG | 1 cut(s) | 963 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 177, 360, 1013, 1316 |
| BseMII | CTCAG | 1 cut(s) | 744 |
| BseNI | ACTGG | 2 cut(s) | 209, 601 |
| BseRI | GAGGAG | 1 cut(s) | 1335 |
| BseXI | GCAGC | 2 cut(s) | 237, 515 |
| BseYI | CCCAGC | 3 cut(s) | 243, 285, 308 |
| Bsh1236I | CGCG | 1 cut(s) | 1002 |
| BshFI | GGCC | 3 cut(s) | 201, 419, 1147 |
| BshNI | GGYRCC | 3 cut(s) | 29, 162, 1017 |
| BshTI | ACCGGT | 2 cut(s) | 156, 334 |
| BsiHKAI | GWGCWC | 2 cut(s) | 17, 897 |
| BsiSI | CCGG | 5 cut(s) | 27, 33, 157, 178, 335 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 177, 360, 1013, 1316 |
| BsmAI | GTCTC | 3 cut(s) | 428, 829, 1292 |
| BsmBI | CGTCTC | 2 cut(s) | 428, 829 |
| BsnI | GGCC | 3 cut(s) | 201, 419, 1147 |
| Bsp1286I | GDGCHC | 2 cut(s) | 17, 897 |
| Bsp143I | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| BspANI | GGCC | 3 cut(s) | 201, 419, 1147 |
| BspCNI | CTCAG | 1 cut(s) | 743 |
| BspFNI | CGCG | 1 cut(s) | 1002 |
| BspHI | TCATGA | 2 cut(s) | 394, 889 |
| BspLI | GGNNCC | 6 cut(s) | 31, 164, 284, 1019, 1118, 1413 |
| BspMI | ACCTGC | 1 cut(s) | 1271 |
| BspPI | GGATC | 6 cut(s) | 133, 884, 954, 1394, 1406, 1419 |
| BspT107I | GGYRCC | 3 cut(s) | 29, 162, 1017 |
| BsrFI | RCCGGY | 2 cut(s) | 156, 334 |
| BsrI | ACTGG | 2 cut(s) | 209, 601 |
| BssAI | RCCGGY | 2 cut(s) | 156, 334 |
| BssECI | CCNNGG | 1 cut(s) | 963 |
| BssMI | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| BssNI | GRCGYC | 2 cut(s) | 163, 1018 |
| Bst2UI | CCWGG | 3 cut(s) | 385, 431, 455 |
| Bst4CI | ACNGT | 4 cut(s) | 85, 327, 469, 1303 |
| Bst6I | CTCTTC | 1 cut(s) | 1422 |
| BstACI | GRCGYC | 2 cut(s) | 163, 1018 |
| BstC8I | GCNNGC | 2 cut(s) | 407, 477 |
| BstDEI | CTNAG | 6 cut(s) | 508, 730, 843, 1040, 1128, 1343 |
| BstDSI | CCRYGG | 1 cut(s) | 963 |
| BstEII | GGTNACC | 1 cut(s) | 1091 |
| BstFNI | CGCG | 1 cut(s) | 1002 |
| BstH2I | RGCGCY | 3 cut(s) | 166, 292, 1021 |
| BstHHI | GCGC | 4 cut(s) | 165, 291, 1004, 1020 |
| BstKTI | GATC | 8 cut(s) | 10, 141, 780, 879, 962, 1261, 1402, 1414 |
| BstMAI | GTCTC | 3 cut(s) | 428, 829, 1292 |
| BstMBI | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 286, 297, 491, 500, 512, 521, 1024, 1277, 1451 |
| BstNI | CCWGG | 3 cut(s) | 385, 431, 455 |
| BstPI | GGTNACC | 1 cut(s) | 1091 |
| BstSCI | CCNGG | 4 cut(s) | 177, 383, 429, 453 |
| BstUI | CGCG | 1 cut(s) | 1002 |
| BstV1I | GCAGC | 2 cut(s) | 237, 515 |
| BstV2I | GAAGAC | 4 cut(s) | 627, 809, 1223, 1297 |
| BstX2I | RGATCY | 2 cut(s) | 959, 1411 |
| BstYI | RGATCY | 2 cut(s) | 959, 1411 |
| BsuI | GTATCC | 1 cut(s) | 1039 |
| BsuRI | GGCC | 3 cut(s) | 201, 419, 1147 |
| BtgI | CCRYGG | 1 cut(s) | 963 |
| BtrI | CACGTC | 4 cut(s) | 272, 295, 318, 460 |
| BtsIMutI | CAGTG | 2 cut(s) | 90, 202 |
| BveI | ACCTGC | 1 cut(s) | 1271 |
| Cac8I | GCNNGC | 2 cut(s) | 407, 477 |
| CaiI | CAGNNNCTG | 1 cut(s) | 253 |
| CciI | TCATGA | 2 cut(s) | 394, 889 |
| CfoI | GCGC | 4 cut(s) | 165, 291, 1004, 1020 |
| Cfr10I | RCCGGY | 2 cut(s) | 156, 334 |
| Cfr13I | GGNCC | 3 cut(s) | 282, 1064, 1146 |
| Csp6I | GTAC | 1 cut(s) | 604 |
| CspAI | ACCGGT | 2 cut(s) | 156, 334 |
| CviAII | CATG | 5 cut(s) | 395, 890, 926, 1333, 1381 |
| CviQI | GTAC | 1 cut(s) | 604 |
| DdeI | CTNAG | 6 cut(s) | 508, 730, 843, 1040, 1128, 1343 |
| DinI | GGCGCC | 2 cut(s) | 164, 1019 |
| DpnI | GATC | 8 cut(s) | 9, 140, 779, 878, 961, 1260, 1401, 1413 |
| DpnII | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| EaeI | YGGCCR | 1 cut(s) | 199 |
| Eam1104I | CTCTTC | 1 cut(s) | 1422 |
| EarI | CTCTTC | 1 cut(s) | 1422 |
| EciI | GGCGGA | 2 cut(s) | 392, 1223 |
| Ecl136II | GAGCTC | 2 cut(s) | 15, 895 |
| Eco24I | GRGCYC | 2 cut(s) | 17, 897 |
| Eco47I | GGWCC | 2 cut(s) | 282, 1064 |
| Eco53kI | GAGCTC | 2 cut(s) | 15, 895 |
| Eco91I | GGTNACC | 1 cut(s) | 1091 |
| EcoICRI | GAGCTC | 2 cut(s) | 15, 895 |
| EcoO65I | GGTNACC | 1 cut(s) | 1091 |
| EcoRII | CCWGG | 3 cut(s) | 383, 429, 453 |
| EcoT38I | GRGCYC | 2 cut(s) | 17, 897 |
| EgeI | GGCGCC | 2 cut(s) | 164, 1019 |
| EheI | GGCGCC | 2 cut(s) | 164, 1019 |
| Esp3I | CGTCTC | 2 cut(s) | 428, 829 |
| FaeI | CATG | 5 cut(s) | 398, 893, 929, 1336, 1384 |
| FatI | CATG | 5 cut(s) | 394, 889, 925, 1332, 1380 |
| FauI | CCCGC | 1 cut(s) | 230 |
| FauNDI | CATATG | 2 cut(s) | 552, 585 |
| Fnu4HI | GCNGC | 3 cut(s) | 226, 504, 1237 |
| FriOI | GRGCYC | 2 cut(s) | 17, 897 |
| Fsp4HI | GCNGC | 3 cut(s) | 226, 504, 1237 |
| FspBI | CTAG | 6 cut(s) | 450, 671, 1181, 1272, 1448, 1465 |
| GlaI | GCGC | 4 cut(s) | 164, 290, 1003, 1019 |
| GluI | GCNGC | 3 cut(s) | 226, 504, 1237 |
| GsaI | CCCAGC | 3 cut(s) | 247, 289, 312 |
| GsuI | CTGGAG | 4 cut(s) | 286, 452, 584, 610 |
| HaeII | RGCGCY | 3 cut(s) | 166, 292, 1021 |
| HaeIII | GGCC | 3 cut(s) | 201, 419, 1147 |
| HapII | CCGG | 5 cut(s) | 27, 33, 157, 178, 335 |
| HhaI | GCGC | 4 cut(s) | 165, 291, 1004, 1020 |
| Hin1I | GRCGYC | 2 cut(s) | 163, 1018 |
| Hin1II | CATG | 5 cut(s) | 398, 893, 929, 1336, 1384 |
| Hin6I | GCGC | 4 cut(s) | 163, 289, 1002, 1018 |
| HinP1I | GCGC | 4 cut(s) | 163, 289, 1002, 1018 |
| HincII | GTYRAC | 3 cut(s) | 275, 330, 340 |
| HindII | GTYRAC | 3 cut(s) | 275, 330, 340 |
| HindIII | AAGCTT | 1 cut(s) | 483 |
| HpaII | CCGG | 5 cut(s) | 27, 33, 157, 178, 335 |
| Hpy166II | GTNNAC | 3 cut(s) | 275, 330, 340 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 19, 101, 153, 733 |
| Hpy188III | TCNNGA | 9 cut(s) | 303, 395, 627, 665, 719, 890, 957, 983, 1397 |
| Hpy8I | GTNNAC | 3 cut(s) | 275, 330, 340 |
| HpyAV | CCTTC | 4 cut(s) | 624, 826, 1082, 1377 |
| HpyCH4III | ACNGT | 4 cut(s) | 85, 327, 469, 1303 |
| HpyCH4IV | ACGT | 7 cut(s) | 271, 294, 317, 459, 645, 861, 1206 |
| HpyCH4V | TGCA | 6 cut(s) | 81, 830, 869, 1252, 1280, 1445 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 286, 297, 491, 500, 512, 521, 1024, 1277, 1451 |
| HpyF3I | CTNAG | 6 cut(s) | 508, 730, 843, 1040, 1128, 1343 |
| HpySE526I | ACGT | 7 cut(s) | 271, 294, 317, 459, 645, 861, 1206 |
| Hsp92I | GRCGYC | 2 cut(s) | 163, 1018 |
| Hsp92II | CATG | 5 cut(s) | 398, 893, 929, 1336, 1384 |
| HspAI | GCGC | 4 cut(s) | 163, 289, 1002, 1018 |
| KasI | GGCGCC | 2 cut(s) | 162, 1017 |
| Kzo9I | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| LmnI | GCTCC | 6 cut(s) | 12, 35, 216, 305, 603, 902 |
| Lsp1109I | GCAGC | 2 cut(s) | 237, 515 |
| LweI | GCATC | 3 cut(s) | 105, 418, 1432 |
| MaeI | CTAG | 6 cut(s) | 450, 671, 1181, 1272, 1448, 1465 |
| MaeII | ACGT | 7 cut(s) | 271, 294, 317, 459, 645, 861, 1206 |
| MaeIII | GTNAC | 4 cut(s) | 650, 862, 1091, 1173 |
| MalI | GATC | 8 cut(s) | 9, 140, 779, 878, 961, 1260, 1401, 1413 |
| MboI | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| MboII | GAAGA | 9 cut(s) | 142, 632, 814, 955, 1134, 1228, 1297, 1409, 1451 |
| MflI | RGATCY | 2 cut(s) | 959, 1411 |
| MhlI | GDGCHC | 2 cut(s) | 17, 897 |
| MlsI | TGGCCA | 1 cut(s) | 201 |
| MluCI | AATT | 6 cut(s) | 195, 378, 761, 952, 991, 1134 |
| MluNI | TGGCCA | 1 cut(s) | 201 |
| Mly113I | GGCGCC | 2 cut(s) | 163, 1018 |
| MlyI | GAGTC | 5 cut(s) | 571, 617, 647, 799, 1213 |
| MmeI | TCCRAC | 3 cut(s) | 242, 1189, 1247 |
| MnlI | CCTC | 7 cut(s) | 123, 505, 701, 1007, 1177, 1313, 1425 |
| Mox20I | TGGCCA | 1 cut(s) | 201 |
| MroXI | GAANNNNTTC | 1 cut(s) | 738 |
| MscI | TGGCCA | 1 cut(s) | 201 |
| MseI | TTAA | 1 cut(s) | 755 |
| MslI | CAYNNNNRTG | 9 cut(s) | 539, 555, 572, 588, 785, 938, 1054, 1337, 1379 |
| Msp20I | TGGCCA | 1 cut(s) | 201 |
| MspA1I | CMGCKG | 1 cut(s) | 280 |
| MspI | CCGG | 5 cut(s) | 27, 33, 157, 178, 335 |
| MspR9I | CCNGG | 4 cut(s) | 179, 385, 431, 455 |
| MvaI | CCWGG | 3 cut(s) | 385, 431, 455 |
| MvnI | CGCG | 1 cut(s) | 1002 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 286, 297, 491, 500, 512, 521, 1024, 1277, 1451 |
| NarI | GGCGCC | 2 cut(s) | 163, 1018 |
| NciI | CCSGG | 1 cut(s) | 179 |
| NdeI | CATATG | 2 cut(s) | 552, 585 |
| NdeII | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| NlaIII | CATG | 5 cut(s) | 398, 893, 929, 1336, 1384 |
| NlaIV | GGNNCC | 6 cut(s) | 31, 164, 284, 1019, 1118, 1413 |
| NmuCI | GTSAC | 1 cut(s) | 650 |
| OliI | CACNNNNGTG | 1 cut(s) | 785 |
| PagI | TCATGA | 2 cut(s) | 394, 889 |
| PdmI | GAANNNNTTC | 1 cut(s) | 738 |
| PfeI | GAWTC | 7 cut(s) | 426, 439, 560, 593, 749, 855, 986 |
| PflFI | GACNNNGTC | 1 cut(s) | 1358 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 360 |
| PfoI | TCCNGGA | 1 cut(s) | 429 |
| PinAI | ACCGGT | 2 cut(s) | 156, 334 |
| PkrI | GCNGC | 3 cut(s) | 227, 505, 1238 |
| PleI | GAGTC | 5 cut(s) | 571, 617, 647, 799, 1213 |
| PluTI | GGCGCC | 2 cut(s) | 166, 1021 |
| PpsI | GAGTC | 5 cut(s) | 571, 617, 647, 799, 1213 |
| Psp124BI | GAGCTC | 2 cut(s) | 17, 897 |
| Psp1406I | AACGTT | 1 cut(s) | 861 |
| Psp6I | CCWGG | 3 cut(s) | 383, 429, 453 |
| PspEI | GGTNACC | 1 cut(s) | 1091 |
| PspFI | CCCAGC | 3 cut(s) | 243, 285, 308 |
| PspGI | CCWGG | 3 cut(s) | 383, 429, 453 |
| PspN4I | GGNNCC | 6 cut(s) | 31, 164, 284, 1019, 1118, 1413 |
| PspPI | GGNCC | 3 cut(s) | 282, 1064, 1146 |
| PstNI | CAGNNNCTG | 1 cut(s) | 253 |
| PsuI | RGATCY | 2 cut(s) | 959, 1411 |
| PsyI | GACNNNGTC | 1 cut(s) | 1358 |
| RsaI | GTAC | 1 cut(s) | 605 |
| RsaNI | GTAC | 1 cut(s) | 604 |
| RseI | CAYNNNNRTG | 9 cut(s) | 539, 555, 572, 588, 785, 938, 1054, 1337, 1379 |
| SacI | GAGCTC | 2 cut(s) | 17, 897 |
| SaqAI | TTAA | 1 cut(s) | 755 |
| SatI | GCNGC | 3 cut(s) | 226, 504, 1237 |
| Sau3AI | GATC | 8 cut(s) | 7, 138, 777, 876, 959, 1258, 1399, 1411 |
| Sau96I | GGNCC | 3 cut(s) | 282, 1064, 1146 |
| SchI | GAGTC | 5 cut(s) | 571, 617, 647, 799, 1213 |
| ScrFI | CCNGG | 4 cut(s) | 179, 385, 431, 455 |
| SduI | GDGCHC | 2 cut(s) | 17, 897 |
| SfaNI | GCATC | 3 cut(s) | 105, 418, 1432 |
| SfoI | GGCGCC | 2 cut(s) | 164, 1019 |
| SinI | GGWCC | 2 cut(s) | 282, 1064 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 539, 555, 572, 588, 785, 938, 1054, 1337, 1379 |
| SmlI | CTYRAG | 3 cut(s) | 413, 443, 480 |
| SmoI | CTYRAG | 3 cut(s) | 413, 443, 480 |
| Sse9I | AATT | 6 cut(s) | 195, 378, 761, 952, 991, 1134 |
| SspDI | GGCGCC | 2 cut(s) | 162, 1017 |
| SspI | AATATT | 1 cut(s) | 233 |
| SspMI | CTAG | 6 cut(s) | 450, 671, 1181, 1272, 1448, 1465 |
| SstI | GAGCTC | 2 cut(s) | 17, 897 |
| StyD4I | CCNGG | 4 cut(s) | 177, 383, 429, 453 |
| TaaI | ACNGT | 4 cut(s) | 85, 327, 469, 1303 |
| TaiI | ACGT | 7 cut(s) | 274, 297, 320, 462, 648, 864, 1209 |
| TaqI | TCGA | 3 cut(s) | 137, 853, 956 |
| TasI | AATT | 6 cut(s) | 195, 378, 761, 952, 991, 1134 |
| TatI | WGTACW | 1 cut(s) | 603 |
| TauI | GCSGC | 1 cut(s) | 1239 |
| TfiI | GAWTC | 7 cut(s) | 426, 439, 560, 593, 749, 855, 986 |
| Tru1I | TTAA | 1 cut(s) | 755 |
| Tru9I | TTAA | 1 cut(s) | 755 |
| TscAI | CASTG | 2 cut(s) | 90, 209 |
| TseFI | GTSAC | 1 cut(s) | 650 |
| TseI | GCWGC | 2 cut(s) | 225, 503 |
| Tsp45I | GTSAC | 1 cut(s) | 650 |
| TspDTI | ATGAA | 9 cut(s) | 383, 629, 633, 773, 878, 923, 1127, 1231, 1349 |
| TspGWI | ACGGA | 6 cut(s) | 338, 638, 889, 952, 1129, 1379 |
| TspRI | CASTG | 2 cut(s) | 90, 209 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1358 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 360 |
| VpaK11BI | GGWCC | 2 cut(s) | 282, 1064 |
| XapI | RAATTY | 1 cut(s) | 378 |
| XmnI | GAANNNNTTC | 1 cut(s) | 738 |
| XspI | CTAG | 6 cut(s) | 450, 671, 1181, 1272, 1448, 1465 |