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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 755 |
| AclWI | GGATC | 1 cut(s) | 690 |
| AcoI | YGGCCR | 1 cut(s) | 738 |
| AcyI | GRCGYC | 1 cut(s) | 752 |
| AfaI | GTAC | 1 cut(s) | 437 |
| AgsI | TTSAA | 2 cut(s) | 352, 693 |
| AjiI | CACGTC | 2 cut(s) | 28, 238 |
| AjnI | CCWGG | 1 cut(s) | 207 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 477, 509 |
| AluBI | AGCT | 7 cut(s) | 226, 257, 263, 341, 347, 631, 641 |
| AluI | AGCT | 7 cut(s) | 226, 257, 263, 341, 347, 631, 641 |
| Alw21I | GWGCWC | 1 cut(s) | 633 |
| Alw26I | GTCTC | 3 cut(s) | 481, 550, 565 |
| AlwI | GGATC | 1 cut(s) | 690 |
| Ama87I | CYCGRG | 1 cut(s) | 221 |
| AoxI | GGCC | 2 cut(s) | 73, 738 |
| ApeKI | GCWGC | 3 cut(s) | 8, 281, 365 |
| AspLEI | GCGC | 1 cut(s) | 24 |
| AspS9I | GGNCC | 2 cut(s) | 14, 612 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 760 |
| AvaI | CYCGRG | 1 cut(s) | 221 |
| AvaII | GGWCC | 2 cut(s) | 14, 612 |
| BalI | TGGCCA | 1 cut(s) | 740 |
| BanII | GRGCYC | 1 cut(s) | 633 |
| BbsI | GAAGAC | 1 cut(s) | 462 |
| Bbv12I | GWGCWC | 1 cut(s) | 633 |
| BbvI | GCAGC | 3 cut(s) | 20, 293, 377 |
| BccI | CCATC | 4 cut(s) | 194, 317, 401, 565 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 584, 618 |
| BciT130I | CCWGG | 1 cut(s) | 209 |
| BcoDI | GTCTC | 3 cut(s) | 481, 550, 565 |
| BfaI | CTAG | 2 cut(s) | 462, 527 |
| BfmI | CTRYAG | 1 cut(s) | 603 |
| BfoI | RGCGCY | 1 cut(s) | 25 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 290, 374 |
| BisI | GCNGC | 4 cut(s) | 9, 282, 366, 755 |
| BlpI | GCTNAGC | 1 cut(s) | 227 |
| BlsI | GCNGC | 4 cut(s) | 10, 283, 367, 756 |
| Bme1390I | CCNGG | 1 cut(s) | 209 |
| Bme18I | GGWCC | 2 cut(s) | 14, 612 |
| BmeT110I | CYCGRG | 1 cut(s) | 221 |
| BmgBI | CACGTC | 2 cut(s) | 28, 238 |
| BmgT120I | GGNCC | 2 cut(s) | 14, 612 |
| BmiI | GGNNCC | 1 cut(s) | 16 |
| BmrFI | CCNGG | 1 cut(s) | 209 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BpiI | GAAGAC | 1 cut(s) | 462 |
| BpmI | CTGGAG | 1 cut(s) | 416 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 176, 243, 327 |
| Bsa29I | ATCGAT | 1 cut(s) | 594 |
| BsaHI | GRCGYC | 1 cut(s) | 752 |
| BsaI | GGTCTC | 1 cut(s) | 481 |
| BsaJI | CCNNGG | 1 cut(s) | 699 |
| BsaWI | WCCGGW | 2 cut(s) | 45, 59 |
| Bse1I | ACTGG | 2 cut(s) | 151, 433 |
| BseBI | CCWGG | 1 cut(s) | 209 |
| BseCI | ATCGAT | 1 cut(s) | 594 |
| BseDI | CCNNGG | 1 cut(s) | 699 |
| BseGI | GGATG | 5 cut(s) | 108, 312, 396, 427, 669 |
| BseNI | ACTGG | 2 cut(s) | 151, 433 |
| BseXI | GCAGC | 3 cut(s) | 20, 293, 377 |
| BseYI | CCCAGC | 1 cut(s) | 18 |
| BshFI | GGCC | 2 cut(s) | 75, 740 |
| BshVI | ATCGAT | 1 cut(s) | 594 |
| BsiHKAI | GWGCWC | 1 cut(s) | 633 |
| BsiHKCI | CYCGRG | 1 cut(s) | 221 |
| BsiSI | CCGG | 3 cut(s) | 12, 46, 60 |
| BsmAI | GTCTC | 3 cut(s) | 481, 550, 565 |
| BsnI | GGCC | 2 cut(s) | 75, 740 |
| Bso31I | GGTCTC | 1 cut(s) | 481 |
| BsoBI | CYCGRG | 1 cut(s) | 221 |
| Bsp1286I | GDGCHC | 1 cut(s) | 633 |
| Bsp143I | GATC | 1 cut(s) | 695 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 227 |
| Bsp19I | CCATGG | 1 cut(s) | 699 |
| BspACI | CCGC | 1 cut(s) | 755 |
| BspANI | GGCC | 2 cut(s) | 75, 740 |
| BspDI | ATCGAT | 1 cut(s) | 594 |
| BspHI | TCATGA | 1 cut(s) | 625 |
| BspLI | GGNNCC | 1 cut(s) | 16 |
| BspMAI | CTGCAG | 1 cut(s) | 607 |
| BspPI | GGATC | 1 cut(s) | 690 |
| BspTNI | GGTCTC | 1 cut(s) | 481 |
| BsrI | ACTGG | 2 cut(s) | 151, 433 |
| BssECI | CCNNGG | 1 cut(s) | 699 |
| BssMI | GATC | 1 cut(s) | 695 |
| BssNI | GRCGYC | 1 cut(s) | 752 |
| BssT1I | CCWWGG | 1 cut(s) | 699 |
| Bst2UI | CCWGG | 1 cut(s) | 209 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 544 |
| BstACI | GRCGYC | 1 cut(s) | 752 |
| BstDEI | CTNAG | 5 cut(s) | 227, 286, 370, 579, 764 |
| BstDSI | CCRYGG | 1 cut(s) | 699 |
| BstF5I | GGATG | 5 cut(s) | 108, 312, 396, 427, 669 |
| BstH2I | RGCGCY | 1 cut(s) | 25 |
| BstHHI | GCGC | 1 cut(s) | 24 |
| BstKTI | GATC | 1 cut(s) | 698 |
| BstMAI | GTCTC | 3 cut(s) | 481, 550, 565 |
| BstMBI | GATC | 1 cut(s) | 695 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 30, 269, 278, 290, 299, 374, 383 |
| BstNI | CCWGG | 1 cut(s) | 209 |
| BstSCI | CCNGG | 1 cut(s) | 207 |
| BstSFI | CTRYAG | 1 cut(s) | 603 |
| BstV1I | GCAGC | 3 cut(s) | 20, 293, 377 |
| BstV2I | GAAGAC | 1 cut(s) | 462 |
| BstX2I | RGATCY | 1 cut(s) | 695 |
| BstYI | RGATCY | 1 cut(s) | 695 |
| Bsu15I | ATCGAT | 1 cut(s) | 594 |
| BsuRI | GGCC | 2 cut(s) | 75, 740 |
| BsuTUI | ATCGAT | 1 cut(s) | 594 |
| BtgI | CCRYGG | 1 cut(s) | 699 |
| BtrI | CACGTC | 2 cut(s) | 28, 238 |
| BtsCI | GGATG | 5 cut(s) | 108, 312, 396, 427, 669 |
| CciI | TCATGA | 1 cut(s) | 625 |
| CfoI | GCGC | 1 cut(s) | 24 |
| Cfr13I | GGNCC | 2 cut(s) | 14, 612 |
| ClaI | ATCGAT | 1 cut(s) | 594 |
| CseI | GACGC | 1 cut(s) | 760 |
| Csp6I | GTAC | 1 cut(s) | 436 |
| CviAII | CATG | 5 cut(s) | 514, 626, 662, 700, 742 |
| CviQI | GTAC | 1 cut(s) | 436 |
| DdeI | CTNAG | 5 cut(s) | 227, 286, 370, 579, 764 |
| DpnI | GATC | 1 cut(s) | 697 |
| DpnII | GATC | 1 cut(s) | 695 |
| EaeI | YGGCCR | 1 cut(s) | 738 |
| Ecl136II | GAGCTC | 1 cut(s) | 631 |
| Eco130I | CCWWGG | 1 cut(s) | 699 |
| Eco24I | GRGCYC | 1 cut(s) | 633 |
| Eco31I | GGTCTC | 1 cut(s) | 481 |
| Eco32I | GATATC | 1 cut(s) | 158 |
| Eco47I | GGWCC | 2 cut(s) | 14, 612 |
| Eco53kI | GAGCTC | 1 cut(s) | 631 |
| Eco88I | CYCGRG | 1 cut(s) | 221 |
| EcoICRI | GAGCTC | 1 cut(s) | 631 |
| EcoRII | CCWGG | 1 cut(s) | 207 |
| EcoRV | GATATC | 1 cut(s) | 158 |
| EcoT14I | CCWWGG | 1 cut(s) | 699 |
| EcoT38I | GRGCYC | 1 cut(s) | 633 |
| ErhI | CCWWGG | 1 cut(s) | 699 |
| FaeI | CATG | 5 cut(s) | 517, 629, 665, 703, 745 |
| FatI | CATG | 5 cut(s) | 513, 625, 661, 699, 741 |
| FauNDI | CATATG | 1 cut(s) | 417 |
| Fnu4HI | GCNGC | 4 cut(s) | 9, 282, 366, 755 |
| FokI | GGATG | 5 cut(s) | 115, 299, 383, 434, 656 |
| FriOI | GRGCYC | 1 cut(s) | 633 |
| Fsp4HI | GCNGC | 4 cut(s) | 9, 282, 366, 755 |
| FspBI | CTAG | 2 cut(s) | 462, 527 |
| GlaI | GCGC | 1 cut(s) | 23 |
| GluI | GCNGC | 4 cut(s) | 9, 282, 366, 755 |
| GsaI | CCCAGC | 1 cut(s) | 22 |
| GsuI | CTGGAG | 1 cut(s) | 416 |
| HaeII | RGCGCY | 1 cut(s) | 25 |
| HaeIII | GGCC | 2 cut(s) | 75, 740 |
| HapII | CCGG | 3 cut(s) | 12, 46, 60 |
| HgaI | GACGC | 1 cut(s) | 760 |
| HhaI | GCGC | 1 cut(s) | 24 |
| Hin1I | GRCGYC | 1 cut(s) | 752 |
| Hin1II | CATG | 5 cut(s) | 517, 629, 665, 703, 745 |
| Hin6I | GCGC | 1 cut(s) | 22 |
| HinP1I | GCGC | 1 cut(s) | 22 |
| HincII | GTYRAC | 1 cut(s) | 51 |
| HindII | GTYRAC | 1 cut(s) | 51 |
| HindIII | AAGCTT | 2 cut(s) | 261, 345 |
| HinfI | GANTC | 7 cut(s) | 204, 217, 322, 406, 425, 509, 591 |
| HpaII | CCGG | 3 cut(s) | 12, 46, 60 |
| HphI | GGTGA | 2 cut(s) | 74, 760 |
| Hpy166II | GTNNAC | 3 cut(s) | 41, 51, 181 |
| Hpy188III | TCNNGA | 6 cut(s) | 153, 173, 221, 521, 626, 693 |
| Hpy8I | GTNNAC | 3 cut(s) | 41, 51, 181 |
| HpyAV | CCTTC | 2 cut(s) | 459, 562 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 544 |
| HpyCH4IV | ACGT | 2 cut(s) | 27, 237 |
| HpyCH4V | TGCA | 1 cut(s) | 605 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 30, 269, 278, 290, 299, 374, 383 |
| HpyF3I | CTNAG | 5 cut(s) | 227, 286, 370, 579, 764 |
| HpySE526I | ACGT | 2 cut(s) | 27, 237 |
| Hsp92I | GRCGYC | 1 cut(s) | 752 |
| Hsp92II | CATG | 5 cut(s) | 517, 629, 665, 703, 745 |
| HspAI | GCGC | 1 cut(s) | 22 |
| Kzo9I | GATC | 1 cut(s) | 695 |
| LmnI | GCTCC | 3 cut(s) | 136, 435, 638 |
| Lsp1109I | GCAGC | 3 cut(s) | 20, 293, 377 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeI | CTAG | 2 cut(s) | 462, 527 |
| MaeII | ACGT | 2 cut(s) | 27, 237 |
| MaeIII | GTNAC | 5 cut(s) | 62, 107, 506, 598, 748 |
| MalI | GATC | 1 cut(s) | 697 |
| MboI | GATC | 1 cut(s) | 695 |
| MboII | GAAGA | 4 cut(s) | 464, 467, 497, 691 |
| MflI | RGATCY | 1 cut(s) | 695 |
| MhlI | GDGCHC | 1 cut(s) | 633 |
| MlsI | TGGCCA | 1 cut(s) | 740 |
| MluCI | AATT | 4 cut(s) | 54, 119, 531, 688 |
| MluNI | TGGCCA | 1 cut(s) | 740 |
| MlyI | GAGTC | 3 cut(s) | 316, 400, 503 |
| MnlI | CCTC | 6 cut(s) | 93, 283, 367, 714, 718, 744 |
| Mox20I | TGGCCA | 1 cut(s) | 740 |
| MscI | TGGCCA | 1 cut(s) | 740 |
| MseI | TTAA | 1 cut(s) | 534 |
| MslI | CAYNNNNRTG | 5 cut(s) | 317, 401, 420, 674, 746 |
| Msp20I | TGGCCA | 1 cut(s) | 740 |
| MspI | CCGG | 3 cut(s) | 12, 46, 60 |
| MspR9I | CCNGG | 1 cut(s) | 209 |
| MvaI | CCWGG | 1 cut(s) | 209 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 30, 269, 278, 290, 299, 374, 383 |
| NcoI | CCATGG | 1 cut(s) | 699 |
| NdeI | CATATG | 1 cut(s) | 417 |
| NdeII | GATC | 1 cut(s) | 695 |
| NlaIII | CATG | 5 cut(s) | 517, 629, 665, 703, 745 |
| NlaIV | GGNNCC | 1 cut(s) | 16 |
| NmuCI | GTSAC | 3 cut(s) | 62, 506, 748 |
| PaeR7I | CTCGAG | 1 cut(s) | 221 |
| PagI | TCATGA | 1 cut(s) | 625 |
| PfeI | GAWTC | 4 cut(s) | 204, 217, 425, 591 |
| PfoI | TCCNGGA | 1 cut(s) | 207 |
| PkrI | GCNGC | 4 cut(s) | 10, 283, 367, 756 |
| PleI | GAGTC | 3 cut(s) | 316, 400, 503 |
| PpsI | GAGTC | 3 cut(s) | 316, 400, 503 |
| Psp124BI | GAGCTC | 1 cut(s) | 633 |
| Psp6I | CCWGG | 1 cut(s) | 207 |
| PspFI | CCCAGC | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 207 |
| PspN4I | GGNNCC | 1 cut(s) | 16 |
| PspPI | GGNCC | 2 cut(s) | 14, 612 |
| PstI | CTGCAG | 1 cut(s) | 607 |
| PsuI | RGATCY | 1 cut(s) | 695 |
| RsaI | GTAC | 1 cut(s) | 437 |
| RsaNI | GTAC | 1 cut(s) | 436 |
| RseI | CAYNNNNRTG | 5 cut(s) | 317, 401, 420, 674, 746 |
| SacI | GAGCTC | 1 cut(s) | 633 |
| SaqAI | TTAA | 1 cut(s) | 534 |
| SatI | GCNGC | 4 cut(s) | 9, 282, 366, 755 |
| Sau3AI | GATC | 1 cut(s) | 695 |
| Sau96I | GGNCC | 2 cut(s) | 14, 612 |
| SchI | GAGTC | 3 cut(s) | 316, 400, 503 |
| ScrFI | CCNGG | 1 cut(s) | 209 |
| SduI | GDGCHC | 1 cut(s) | 633 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 603 |
| Sfr274I | CTCGAG | 1 cut(s) | 221 |
| SinI | GGWCC | 2 cut(s) | 14, 612 |
| SlaI | CTCGAG | 1 cut(s) | 221 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 317, 401, 420, 674, 746 |
| SmlI | CTYRAG | 4 cut(s) | 191, 221, 258, 342 |
| SmoI | CTYRAG | 4 cut(s) | 191, 221, 258, 342 |
| Sse9I | AATT | 4 cut(s) | 54, 119, 531, 688 |
| SsiI | CCGC | 1 cut(s) | 755 |
| SspMI | CTAG | 2 cut(s) | 462, 527 |
| SstI | GAGCTC | 1 cut(s) | 633 |
| StyD4I | CCNGG | 1 cut(s) | 207 |
| StyI | CCWWGG | 1 cut(s) | 699 |
| TaaI | ACNGT | 2 cut(s) | 247, 544 |
| TaiI | ACGT | 2 cut(s) | 30, 240 |
| TaqI | TCGA | 6 cut(s) | 98, 198, 222, 483, 589, 594 |
| TasI | AATT | 4 cut(s) | 54, 119, 531, 688 |
| TauI | GCSGC | 1 cut(s) | 757 |
| TfiI | GAWTC | 4 cut(s) | 204, 217, 425, 591 |
| Tru1I | TTAA | 1 cut(s) | 534 |
| Tru9I | TTAA | 1 cut(s) | 534 |
| TseFI | GTSAC | 3 cut(s) | 62, 506, 748 |
| TseI | GCWGC | 3 cut(s) | 8, 281, 365 |
| Tsp45I | GTSAC | 3 cut(s) | 62, 506, 748 |
| TspDTI | ATGAA | 3 cut(s) | 461, 465, 614 |
| TspGWI | ACGGA | 2 cut(s) | 494, 625 |
| VpaK11BI | GGWCC | 2 cut(s) | 14, 612 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 706 |
| XhoI | CTCGAG | 1 cut(s) | 221 |
| XspI | CTAG | 2 cut(s) | 462, 527 |