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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 653 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 547 |
| AciI | CCGC | 3 cut(s) | 61, 583, 627 |
| AclWI | GGATC | 1 cut(s) | 275 |
| AcoI | YGGCCR | 1 cut(s) | 640 |
| AcsI | RAATTY | 1 cut(s) | 326 |
| AcyI | GRCGYC | 1 cut(s) | 654 |
| AdeI | CACNNNGTG | 1 cut(s) | 836 |
| AfaI | GTAC | 3 cut(s) | 120, 230, 762 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 547, 578, 756 |
| AgsI | TTSAA | 2 cut(s) | 73, 278 |
| AjnI | CCWGG | 2 cut(s) | 87, 111 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 270, 302 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 206, 238 |
| AluBI | AGCT | 7 cut(s) | 30, 143, 460, 470, 490, 776, 828 |
| AluI | AGCT | 7 cut(s) | 30, 143, 460, 470, 490, 776, 828 |
| Alw21I | GWGCWC | 2 cut(s) | 462, 720 |
| Alw26I | GTCTC | 1 cut(s) | 394 |
| AlwI | GGATC | 1 cut(s) | 275 |
| AoxI | GGCC | 2 cut(s) | 75, 640 |
| ApeKI | GCWGC | 2 cut(s) | 161, 307 |
| ApoI | RAATTY | 1 cut(s) | 326 |
| AspLEI | GCGC | 2 cut(s) | 569, 656 |
| AspS9I | GGNCC | 1 cut(s) | 437 |
| AvaII | GGWCC | 1 cut(s) | 437 |
| AxyI | CCTNAGG | 1 cut(s) | 573 |
| BalI | TGGCCA | 1 cut(s) | 642 |
| BanI | GGYRCC | 1 cut(s) | 653 |
| BanII | GRGCYC | 1 cut(s) | 462 |
| BauI | CACGAG | 1 cut(s) | 777 |
| BbsI | GAAGAC | 1 cut(s) | 255 |
| Bbv12I | GWGCWC | 2 cut(s) | 462, 720 |
| BbvI | GCAGC | 2 cut(s) | 173, 294 |
| BccI | CCATC | 4 cut(s) | 74, 197, 394, 681 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 413, 447 |
| BciT130I | CCWGG | 2 cut(s) | 89, 113 |
| BciVI | GTATCC | 1 cut(s) | 85 |
| BcoDI | GTCTC | 1 cut(s) | 394 |
| BfaI | CTAG | 2 cut(s) | 27, 255 |
| BfmI | CTRYAG | 1 cut(s) | 432 |
| BfoI | RGCGCY | 1 cut(s) | 657 |
| BfuI | GTATCC | 1 cut(s) | 85 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 170 |
| BglII | AGATCT | 1 cut(s) | 524 |
| BisI | GCNGC | 4 cut(s) | 162, 308, 584, 628 |
| BlsI | GCNGC | 4 cut(s) | 163, 309, 585, 629 |
| Bme1390I | CCNGG | 2 cut(s) | 89, 113 |
| Bme18I | GGWCC | 1 cut(s) | 437 |
| BmgT120I | GGNCC | 1 cut(s) | 437 |
| BmiI | GGNNCC | 2 cut(s) | 596, 655 |
| BmrFI | CCNGG | 2 cut(s) | 89, 113 |
| BmsI | GCATC | 2 cut(s) | 673, 704 |
| BpiI | GAAGAC | 1 cut(s) | 255 |
| BpmI | CTGGAG | 1 cut(s) | 569 |
| BpuEI | CTTGAG | 2 cut(s) | 122, 123 |
| Bsa29I | ATCGAT | 1 cut(s) | 423 |
| BsaHI | GRCGYC | 1 cut(s) | 654 |
| BsaWI | WCCGGW | 1 cut(s) | 749 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 547, 578, 756 |
| Bse1I | ACTGG | 1 cut(s) | 226 |
| Bse21I | CCTNAGG | 1 cut(s) | 573 |
| BseBI | CCWGG | 2 cut(s) | 89, 113 |
| BseCI | ATCGAT | 1 cut(s) | 423 |
| BseGI | GGATG | 2 cut(s) | 220, 498 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 547, 578, 756 |
| BseNI | ACTGG | 1 cut(s) | 226 |
| BseXI | GCAGC | 2 cut(s) | 173, 294 |
| BshFI | GGCC | 2 cut(s) | 77, 642 |
| BshNI | GGYRCC | 1 cut(s) | 653 |
| BshVI | ATCGAT | 1 cut(s) | 423 |
| BsiHKAI | GWGCWC | 2 cut(s) | 462, 720 |
| BsiSI | CCGG | 1 cut(s) | 750 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 547, 578, 756 |
| BsmAI | GTCTC | 1 cut(s) | 394 |
| BsmBI | CGTCTC | 1 cut(s) | 394 |
| BsnI | GGCC | 2 cut(s) | 77, 642 |
| Bsp1286I | GDGCHC | 2 cut(s) | 462, 720 |
| Bsp143I | GATC | 4 cut(s) | 267, 342, 441, 524 |
| BspACI | CCGC | 3 cut(s) | 61, 583, 627 |
| BspANI | GGCC | 2 cut(s) | 77, 642 |
| BspDI | ATCGAT | 1 cut(s) | 423 |
| BspHI | TCATGA | 1 cut(s) | 454 |
| BspLI | GGNNCC | 2 cut(s) | 596, 655 |
| BspMAI | CTGCAG | 1 cut(s) | 436 |
| BspPI | GGATC | 1 cut(s) | 275 |
| BspT107I | GGYRCC | 1 cut(s) | 653 |
| BsrI | ACTGG | 1 cut(s) | 226 |
| BssMI | GATC | 4 cut(s) | 267, 342, 441, 524 |
| BssNI | GRCGYC | 1 cut(s) | 654 |
| BssSI | CACGAG | 1 cut(s) | 777 |
| Bst2BI | CACGAG | 1 cut(s) | 777 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 113 |
| Bst4CI | ACNGT | 1 cut(s) | 127 |
| BstACI | GRCGYC | 1 cut(s) | 654 |
| BstC8I | GCNNGC | 1 cut(s) | 65 |
| BstDEI | CTNAG | 3 cut(s) | 166, 573, 666 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 576 |
| BstF5I | GGATG | 2 cut(s) | 220, 498 |
| BstH2I | RGCGCY | 1 cut(s) | 657 |
| BstHHI | GCGC | 2 cut(s) | 569, 656 |
| BstKTI | GATC | 4 cut(s) | 270, 345, 444, 527 |
| BstMAI | GTCTC | 1 cut(s) | 394 |
| BstMBI | GATC | 4 cut(s) | 267, 342, 441, 524 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 149, 158, 170, 179, 692, 803 |
| BstNI | CCWGG | 2 cut(s) | 89, 113 |
| BstSCI | CCNGG | 2 cut(s) | 87, 111 |
| BstSFI | CTRYAG | 1 cut(s) | 432 |
| BstV1I | GCAGC | 2 cut(s) | 173, 294 |
| BstV2I | GAAGAC | 1 cut(s) | 255 |
| BstX2I | RGATCY | 2 cut(s) | 267, 524 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 650 |
| BstYI | RGATCY | 2 cut(s) | 267, 524 |
| Bsu15I | ATCGAT | 1 cut(s) | 423 |
| Bsu36I | CCTNAGG | 1 cut(s) | 573 |
| BsuI | GTATCC | 1 cut(s) | 85 |
| BsuRI | GGCC | 2 cut(s) | 77, 642 |
| BsuTUI | ATCGAT | 1 cut(s) | 423 |
| BtgZI | GCGATG | 1 cut(s) | 368 |
| BtsCI | GGATG | 2 cut(s) | 220, 498 |
| BtsI | GCAGTG | 2 cut(s) | 429, 792 |
| BtsIMutI | CAGTG | 2 cut(s) | 429, 792 |
| Cac8I | GCNNGC | 1 cut(s) | 65 |
| CciI | TCATGA | 1 cut(s) | 454 |
| CfoI | GCGC | 2 cut(s) | 569, 656 |
| Cfr13I | GGNCC | 1 cut(s) | 437 |
| ClaI | ATCGAT | 1 cut(s) | 423 |
| Csp6I | GTAC | 3 cut(s) | 119, 229, 761 |
| CviAII | CATG | 2 cut(s) | 455, 644 |
| CviQI | GTAC | 3 cut(s) | 119, 229, 761 |
| DdeI | CTNAG | 3 cut(s) | 166, 573, 666 |
| DinI | GGCGCC | 1 cut(s) | 655 |
| DpnI | GATC | 4 cut(s) | 269, 344, 443, 526 |
| DpnII | GATC | 4 cut(s) | 267, 342, 441, 524 |
| DraI | TTTAAA | 1 cut(s) | 691 |
| DraIII | CACNNNGTG | 1 cut(s) | 836 |
| EaeI | YGGCCR | 1 cut(s) | 640 |
| EciI | GGCGGA | 1 cut(s) | 50 |
| Ecl136II | GAGCTC | 1 cut(s) | 460 |
| Eco24I | GRGCYC | 1 cut(s) | 462 |
| Eco47I | GGWCC | 1 cut(s) | 437 |
| Eco53kI | GAGCTC | 1 cut(s) | 460 |
| Eco81I | CCTNAGG | 1 cut(s) | 573 |
| EcoICRI | GAGCTC | 1 cut(s) | 460 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 576 |
| EcoRI | GAATTC | 1 cut(s) | 326 |
| EcoRII | CCWGG | 2 cut(s) | 87, 111 |
| EcoT38I | GRGCYC | 1 cut(s) | 462 |
| EgeI | GGCGCC | 1 cut(s) | 655 |
| EheI | GGCGCC | 1 cut(s) | 655 |
| Esp3I | CGTCTC | 1 cut(s) | 394 |
| FaeI | CATG | 2 cut(s) | 458, 647 |
| FatI | CATG | 2 cut(s) | 454, 643 |
| FauNDI | CATATG | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 4 cut(s) | 162, 308, 584, 628 |
| FokI | GGATG | 2 cut(s) | 227, 485 |
| FriOI | GRGCYC | 1 cut(s) | 462 |
| Fsp4HI | GCNGC | 4 cut(s) | 162, 308, 584, 628 |
| FspBI | CTAG | 2 cut(s) | 27, 255 |
| GlaI | GCGC | 2 cut(s) | 568, 655 |
| GluI | GCNGC | 4 cut(s) | 162, 308, 584, 628 |
| GsuI | CTGGAG | 1 cut(s) | 569 |
| HaeII | RGCGCY | 1 cut(s) | 657 |
| HaeIII | GGCC | 2 cut(s) | 77, 642 |
| HapII | CCGG | 1 cut(s) | 750 |
| HhaI | GCGC | 2 cut(s) | 569, 656 |
| Hin1I | GRCGYC | 1 cut(s) | 654 |
| Hin1II | CATG | 2 cut(s) | 458, 647 |
| Hin6I | GCGC | 2 cut(s) | 567, 654 |
| HinP1I | GCGC | 2 cut(s) | 567, 654 |
| HindIII | AAGCTT | 2 cut(s) | 141, 488 |
| HinfI | GANTC | 9 cut(s) | 49, 84, 97, 202, 218, 251, 302, 420, 551 |
| HpaII | CCGG | 1 cut(s) | 750 |
| Hpy166II | GTNNAC | 1 cut(s) | 763 |
| Hpy188III | TCNNGA | 8 cut(s) | 53, 101, 255, 455, 522, 548, 735, 779 |
| Hpy8I | GTNNAC | 1 cut(s) | 763 |
| HpyAV | CCTTC | 2 cut(s) | 252, 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 127 |
| HpyCH4IV | ACGT | 2 cut(s) | 117, 294 |
| HpyCH4V | TGCA | 1 cut(s) | 434 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 149, 158, 170, 179, 692, 803 |
| HpyF3I | CTNAG | 3 cut(s) | 166, 573, 666 |
| HpySE526I | ACGT | 2 cut(s) | 117, 294 |
| Hsp92I | GRCGYC | 1 cut(s) | 654 |
| Hsp92II | CATG | 2 cut(s) | 458, 647 |
| HspAI | GCGC | 2 cut(s) | 567, 654 |
| KasI | GGCGCC | 1 cut(s) | 653 |
| Kzo9I | GATC | 4 cut(s) | 267, 342, 441, 524 |
| LmnI | GCTCC | 1 cut(s) | 467 |
| Lsp1109I | GCAGC | 2 cut(s) | 173, 294 |
| LweI | GCATC | 2 cut(s) | 673, 704 |
| MaeI | CTAG | 2 cut(s) | 27, 255 |
| MaeII | ACGT | 2 cut(s) | 117, 294 |
| MaeIII | GTNAC | 2 cut(s) | 299, 790 |
| MalI | GATC | 4 cut(s) | 269, 344, 443, 526 |
| MboI | GATC | 4 cut(s) | 267, 342, 441, 524 |
| MboII | GAAGA | 5 cut(s) | 260, 290, 335, 520, 794 |
| MflI | RGATCY | 2 cut(s) | 267, 524 |
| MhlI | GDGCHC | 2 cut(s) | 462, 720 |
| MlsI | TGGCCA | 1 cut(s) | 642 |
| MluCI | AATT | 4 cut(s) | 326, 517, 556, 786 |
| MluNI | TGGCCA | 1 cut(s) | 642 |
| Mly113I | GGCGCC | 1 cut(s) | 654 |
| MlyI | GAGTC | 4 cut(s) | 196, 245, 296, 560 |
| MnlI | CCTC | 6 cut(s) | 117, 163, 572, 596, 616, 646 |
| Mox20I | TGGCCA | 1 cut(s) | 642 |
| MscI | TGGCCA | 1 cut(s) | 642 |
| MseI | TTAA | 2 cut(s) | 690, 819 |
| MslI | CAYNNNNRTG | 6 cut(s) | 197, 213, 503, 648, 678, 723 |
| Msp20I | TGGCCA | 1 cut(s) | 642 |
| MspI | CCGG | 1 cut(s) | 750 |
| MspR9I | CCNGG | 2 cut(s) | 89, 113 |
| MvaI | CCWGG | 2 cut(s) | 89, 113 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 149, 158, 170, 179, 692, 803 |
| NarI | GGCGCC | 1 cut(s) | 654 |
| NdeI | CATATG | 1 cut(s) | 210 |
| NdeII | GATC | 4 cut(s) | 267, 342, 441, 524 |
| NlaIII | CATG | 2 cut(s) | 458, 647 |
| NlaIV | GGNNCC | 2 cut(s) | 596, 655 |
| NmuCI | GTSAC | 2 cut(s) | 299, 790 |
| PagI | TCATGA | 1 cut(s) | 454 |
| PfeI | GAWTC | 5 cut(s) | 49, 84, 97, 218, 420 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 547 |
| PfoI | TCCNGGA | 1 cut(s) | 87 |
| PkrI | GCNGC | 4 cut(s) | 163, 309, 585, 629 |
| PleI | GAGTC | 4 cut(s) | 196, 245, 296, 559 |
| PluTI | GGCGCC | 1 cut(s) | 657 |
| PpsI | GAGTC | 4 cut(s) | 196, 245, 296, 559 |
| Psp124BI | GAGCTC | 1 cut(s) | 462 |
| Psp6I | CCWGG | 2 cut(s) | 87, 111 |
| PspGI | CCWGG | 2 cut(s) | 87, 111 |
| PspN4I | GGNNCC | 2 cut(s) | 596, 655 |
| PspPI | GGNCC | 1 cut(s) | 437 |
| PstI | CTGCAG | 1 cut(s) | 436 |
| PsuI | RGATCY | 2 cut(s) | 267, 524 |
| RsaI | GTAC | 3 cut(s) | 120, 230, 762 |
| RsaNI | GTAC | 3 cut(s) | 119, 229, 761 |
| RseI | CAYNNNNRTG | 6 cut(s) | 197, 213, 503, 648, 678, 723 |
| SacI | GAGCTC | 1 cut(s) | 462 |
| SaqAI | TTAA | 2 cut(s) | 690, 819 |
| SatI | GCNGC | 4 cut(s) | 162, 308, 584, 628 |
| Sau3AI | GATC | 4 cut(s) | 267, 342, 441, 524 |
| Sau96I | GGNCC | 1 cut(s) | 437 |
| SchI | GAGTC | 4 cut(s) | 196, 245, 296, 560 |
| ScrFI | CCNGG | 2 cut(s) | 89, 113 |
| SduI | GDGCHC | 2 cut(s) | 462, 720 |
| SfaNI | GCATC | 2 cut(s) | 673, 704 |
| SfcI | CTRYAG | 1 cut(s) | 432 |
| SfoI | GGCGCC | 1 cut(s) | 655 |
| SinI | GGWCC | 1 cut(s) | 437 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 197, 213, 503, 648, 678, 723 |
| SmlI | CTYRAG | 2 cut(s) | 101, 138 |
| SmoI | CTYRAG | 2 cut(s) | 101, 138 |
| Sse9I | AATT | 4 cut(s) | 326, 517, 556, 786 |
| SsiI | CCGC | 3 cut(s) | 61, 583, 627 |
| SspDI | GGCGCC | 1 cut(s) | 653 |
| SspMI | CTAG | 2 cut(s) | 27, 255 |
| SstI | GAGCTC | 1 cut(s) | 462 |
| StyD4I | CCNGG | 2 cut(s) | 87, 111 |
| TaaI | ACNGT | 1 cut(s) | 127 |
| TaiI | ACGT | 2 cut(s) | 120, 297 |
| TaqI | TCGA | 4 cut(s) | 418, 423, 521, 736 |
| TaqII | GACCGA | 1 cut(s) | 454 |
| TasI | AATT | 4 cut(s) | 326, 517, 556, 786 |
| TauI | GCSGC | 2 cut(s) | 586, 630 |
| TfiI | GAWTC | 5 cut(s) | 49, 84, 97, 218, 420 |
| Tru1I | TTAA | 2 cut(s) | 690, 819 |
| Tru9I | TTAA | 2 cut(s) | 690, 819 |
| TscAI | CASTG | 2 cut(s) | 436, 799 |
| TseFI | GTSAC | 2 cut(s) | 299, 790 |
| TseI | GCWGC | 2 cut(s) | 161, 307 |
| Tsp45I | GTSAC | 2 cut(s) | 299, 790 |
| TspDTI | ATGAA | 3 cut(s) | 254, 443, 488 |
| TspGWI | ACGGA | 2 cut(s) | 287, 607 |
| TspRI | CASTG | 2 cut(s) | 436, 799 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 547 |
| VpaK11BI | GGWCC | 1 cut(s) | 437 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 576 |
| XapI | RAATTY | 1 cut(s) | 326 |
| XbaI | TCTAGA | 1 cut(s) | 254 |
| XspI | CTAG | 2 cut(s) | 27, 255 |