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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1083 |
| Acc36I | ACCTGC | 1 cut(s) | 779 |
| AccII | CGCG | 1 cut(s) | 929 |
| AciI | CCGC | 8 cut(s) | 113, 224, 353, 369, 410, 739, 888, 1051 |
| AclI | AACGTT | 1 cut(s) | 1002 |
| AcoI | YGGCCR | 5 cut(s) | 193, 497, 866, 1126, 1289 |
| AcsI | RAATTY | 2 cut(s) | 57, 68 |
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AcvI | CACGTG | 3 cut(s) | 315, 340, 728 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 198, 483, 541, 875, 952 |
| AgeI | ACCGGT | 1 cut(s) | 150 |
| AgsI | TTSAA | 3 cut(s) | 124, 1066, 1200 |
| AjiI | CACGTC | 5 cut(s) | 396, 416, 758, 778, 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 59, 91 |
| Alw21I | GWGCWC | 2 cut(s) | 556, 1254 |
| Alw26I | GTCTC | 3 cut(s) | 518, 1113, 1186 |
| AoxI | GGCC | 8 cut(s) | 155, 193, 323, 497, 675, 866, 1126, 1289 |
| ApeKI | GCWGC | 6 cut(s) | 295, 318, 360, 376, 697, 988 |
| ApoI | RAATTY | 2 cut(s) | 57, 68 |
| AsiGI | ACCGGT | 1 cut(s) | 150 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1095 |
| AspLEI | GCGC | 2 cut(s) | 403, 931 |
| AspS9I | GGNCC | 5 cut(s) | 156, 324, 406, 676, 768 |
| AsuC2I | CCSGG | 2 cut(s) | 520, 865 |
| AsuHPI | GGTGA | 2 cut(s) | 730, 890 |
| AvaII | GGWCC | 2 cut(s) | 406, 768 |
| BalI | TGGCCA | 2 cut(s) | 1128, 1291 |
| BanII | GRGCYC | 3 cut(s) | 312, 725, 1254 |
| BbrPI | CACGTG | 3 cut(s) | 315, 340, 728 |
| BbsI | GAAGAC | 2 cut(s) | 963, 1166 |
| Bbv12I | GWGCWC | 2 cut(s) | 556, 1254 |
| BbvI | GCAGC | 6 cut(s) | 307, 330, 347, 363, 684, 1000 |
| BccI | CCATC | 2 cut(s) | 1032, 1108 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 836, 870 |
| BcnI | CCSGG | 2 cut(s) | 520, 865 |
| BcoDI | GTCTC | 3 cut(s) | 518, 1113, 1186 |
| BfmI | CTRYAG | 2 cut(s) | 293, 698 |
| BfoI | RGCGCY | 1 cut(s) | 404 |
| BfuAI | ACCTGC | 1 cut(s) | 779 |
| BglII | AGATCT | 2 cut(s) | 126, 233 |
| BisI | GCNGC | 9 cut(s) | 296, 319, 353, 361, 369, 377, 698, 739, 989 |
| BlpI | GCTNAGC | 1 cut(s) | 372 |
| BlsI | GCNGC | 9 cut(s) | 297, 320, 354, 362, 370, 378, 699, 740, 990 |
| Bme1390I | CCNGG | 2 cut(s) | 520, 865 |
| Bme18I | GGWCC | 2 cut(s) | 406, 768 |
| BmgBI | CACGTC | 5 cut(s) | 396, 416, 758, 778, 790 |
| BmgT120I | GGNCC | 5 cut(s) | 156, 324, 406, 676, 768 |
| BmiI | GGNNCC | 4 cut(s) | 158, 408, 678, 1261 |
| BmrFI | CCNGG | 2 cut(s) | 520, 865 |
| BmrI | ACTGGG | 1 cut(s) | 321 |
| BmsI | GCATC | 1 cut(s) | 16 |
| BmuI | ACTGGG | 1 cut(s) | 321 |
| BpiI | GAAGAC | 2 cut(s) | 963, 1166 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 372 |
| BpuEI | CTTGAG | 1 cut(s) | 1004 |
| BpuMI | CCSGG | 2 cut(s) | 520, 865 |
| BsaAI | YACGTR | 3 cut(s) | 315, 340, 728 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1151 |
| BsaI | GGTCTC | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 2 cut(s) | 424, 519 |
| BsaWI | WCCGGW | 3 cut(s) | 150, 198, 875 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 767, 797 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 198, 483, 541, 875, 952 |
| Bse118I | RCCGGY | 6 cut(s) | 150, 191, 241, 436, 446, 827 |
| Bse1I | ACTGG | 2 cut(s) | 327, 770 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1151 |
| BseDI | CCNNGG | 2 cut(s) | 424, 519 |
| BseJI | GATNNNNATC | 1 cut(s) | 1151 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 198, 483, 541, 875, 952 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseNI | ACTGG | 2 cut(s) | 327, 770 |
| BseRI | GAGGAG | 2 cut(s) | 683, 686 |
| BseXI | GCAGC | 6 cut(s) | 307, 330, 347, 363, 684, 1000 |
| BseYI | CCCAGC | 1 cut(s) | 679 |
| BsgI | GTGCAG | 3 cut(s) | 337, 750, 1170 |
| Bsh1236I | CGCG | 1 cut(s) | 929 |
| Bsh1285I | CGRYCG | 1 cut(s) | 617 |
| BshFI | GGCC | 8 cut(s) | 157, 195, 325, 499, 677, 868, 1128, 1291 |
| BshTI | ACCGGT | 1 cut(s) | 150 |
| BsiEI | CGRYCG | 1 cut(s) | 617 |
| BsiHKAI | GWGCWC | 2 cut(s) | 556, 1254 |
| BslFI | GGGAC | 1 cut(s) | 199 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 198, 483, 541, 875, 952 |
| BsmAI | GTCTC | 3 cut(s) | 518, 1113, 1186 |
| BsmBI | CGTCTC | 1 cut(s) | 1186 |
| BsmFI | GGGAC | 1 cut(s) | 199 |
| BsnI | GGCC | 8 cut(s) | 157, 195, 325, 499, 677, 868, 1128, 1291 |
| Bso31I | GGTCTC | 1 cut(s) | 518 |
| Bsp1286I | GDGCHC | 4 cut(s) | 312, 556, 725, 1254 |
| Bsp143I | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 372 |
| BspACI | CCGC | 8 cut(s) | 113, 224, 353, 369, 410, 739, 888, 1051 |
| BspANI | GGCC | 8 cut(s) | 157, 195, 325, 499, 677, 868, 1128, 1291 |
| BspCNI | CTCAG | 1 cut(s) | 364 |
| BspFNI | CGCG | 1 cut(s) | 929 |
| BspHI | TCATGA | 2 cut(s) | 906, 1246 |
| BspLI | GGNNCC | 4 cut(s) | 158, 408, 678, 1261 |
| BspMAI | CTGCAG | 2 cut(s) | 297, 702 |
| BspMI | ACCTGC | 1 cut(s) | 779 |
| BspQI | GCTCTTC | 1 cut(s) | 1101 |
| BspTNI | GGTCTC | 1 cut(s) | 518 |
| BsrFI | RCCGGY | 6 cut(s) | 150, 191, 241, 436, 446, 827 |
| BsrI | ACTGG | 2 cut(s) | 327, 770 |
| BssAI | RCCGGY | 6 cut(s) | 150, 191, 241, 436, 446, 827 |
| BssECI | CCNNGG | 2 cut(s) | 424, 519 |
| BssMI | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| Bst4CI | ACNGT | 3 cut(s) | 304, 541, 816 |
| Bst6I | CTCTTC | 1 cut(s) | 1101 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 389 |
| BstBAI | YACGTR | 3 cut(s) | 315, 340, 728 |
| BstC8I | GCNNGC | 6 cut(s) | 224, 289, 293, 323, 345, 381 |
| BstDEI | CTNAG | 2 cut(s) | 372, 591 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 950 |
| BstFNI | CGCG | 1 cut(s) | 929 |
| BstH2I | RGCGCY | 1 cut(s) | 404 |
| BstHHI | GCGC | 2 cut(s) | 403, 931 |
| BstKTI | GATC | 6 cut(s) | 129, 236, 389, 617, 642, 1155 |
| BstMAI | GTCTC | 3 cut(s) | 518, 1113, 1186 |
| BstMBI | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| BstMCI | CGRYCG | 1 cut(s) | 617 |
| BstSCI | CCNGG | 2 cut(s) | 518, 863 |
| BstSFI | CTRYAG | 2 cut(s) | 293, 698 |
| BstUI | CGCG | 1 cut(s) | 929 |
| BstV1I | GCAGC | 6 cut(s) | 307, 330, 347, 363, 684, 1000 |
| BstV2I | GAAGAC | 2 cut(s) | 963, 1166 |
| BstX2I | RGATCY | 2 cut(s) | 126, 233 |
| BstYI | RGATCY | 2 cut(s) | 126, 233 |
| BsuRI | GGCC | 8 cut(s) | 157, 195, 325, 499, 677, 868, 1128, 1291 |
| BtgZI | GCGATG | 1 cut(s) | 1051 |
| BtrI | CACGTC | 5 cut(s) | 396, 416, 758, 778, 790 |
| BtsIMutI | CAGTG | 3 cut(s) | 334, 763, 1187 |
| BveI | ACCTGC | 1 cut(s) | 779 |
| Cac8I | GCNNGC | 6 cut(s) | 224, 289, 293, 323, 345, 381 |
| CciI | TCATGA | 2 cut(s) | 906, 1246 |
| CfoI | GCGC | 2 cut(s) | 403, 931 |
| Cfr10I | RCCGGY | 6 cut(s) | 150, 191, 241, 436, 446, 827 |
| Cfr13I | GGNCC | 5 cut(s) | 156, 324, 406, 676, 768 |
| CseI | GACGC | 1 cut(s) | 935 |
| CspAI | ACCGGT | 1 cut(s) | 150 |
| CviAII | CATG | 4 cut(s) | 907, 919, 1247, 1264 |
| DdeI | CTNAG | 2 cut(s) | 372, 591 |
| DpnI | GATC | 6 cut(s) | 128, 235, 388, 616, 641, 1154 |
| DpnII | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| EaeI | YGGCCR | 5 cut(s) | 193, 497, 866, 1126, 1289 |
| Eam1104I | CTCTTC | 1 cut(s) | 1101 |
| EarI | CTCTTC | 1 cut(s) | 1101 |
| Ecl136II | GAGCTC | 1 cut(s) | 1252 |
| Eco24I | GRGCYC | 3 cut(s) | 312, 725, 1254 |
| Eco31I | GGTCTC | 1 cut(s) | 518 |
| Eco47I | GGWCC | 2 cut(s) | 406, 768 |
| Eco53kI | GAGCTC | 1 cut(s) | 1252 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| Eco72I | CACGTG | 3 cut(s) | 315, 340, 728 |
| EcoICRI | GAGCTC | 1 cut(s) | 1252 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 950 |
| EcoO109I | RGGNCCY | 1 cut(s) | 676 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 3 cut(s) | 312, 725, 1254 |
| Esp3I | CGTCTC | 1 cut(s) | 1186 |
| FaeI | CATG | 4 cut(s) | 910, 922, 1250, 1267 |
| FaqI | GGGAC | 1 cut(s) | 199 |
| FatI | CATG | 4 cut(s) | 906, 918, 1246, 1263 |
| FauI | CCCGC | 2 cut(s) | 231, 417 |
| Fnu4HI | GCNGC | 9 cut(s) | 296, 319, 353, 361, 369, 377, 698, 739, 989 |
| FriOI | GRGCYC | 3 cut(s) | 312, 725, 1254 |
| Fsp4HI | GCNGC | 9 cut(s) | 296, 319, 353, 361, 369, 377, 698, 739, 989 |
| GlaI | GCGC | 2 cut(s) | 402, 930 |
| GluI | GCNGC | 9 cut(s) | 296, 319, 353, 361, 369, 377, 698, 739, 989 |
| GsaI | CCCAGC | 1 cut(s) | 683 |
| HaeII | RGCGCY | 1 cut(s) | 404 |
| HaeIII | GGCC | 8 cut(s) | 157, 195, 325, 499, 677, 868, 1128, 1291 |
| HgaI | GACGC | 1 cut(s) | 935 |
| HhaI | GCGC | 2 cut(s) | 403, 931 |
| Hin1II | CATG | 4 cut(s) | 910, 922, 1250, 1267 |
| Hin6I | GCGC | 2 cut(s) | 401, 929 |
| HinP1I | GCGC | 2 cut(s) | 401, 929 |
| HincII | GTYRAC | 6 cut(s) | 431, 442, 452, 812, 823, 833 |
| HindII | GTYRAC | 6 cut(s) | 431, 442, 452, 812, 823, 833 |
| HindIII | AAGCTT | 1 cut(s) | 563 |
| HinfI | GANTC | 4 cut(s) | 141, 579, 1010, 1162 |
| HphI | GGTGA | 2 cut(s) | 730, 890 |
| Hpy166II | GTNNAC | 6 cut(s) | 431, 442, 452, 812, 823, 833 |
| Hpy188I | TCNGA | 6 cut(s) | 238, 508, 787, 1090, 1113, 1212 |
| Hpy188III | TCNNGA | 7 cut(s) | 138, 145, 907, 1007, 1022, 1156, 1247 |
| Hpy8I | GTNNAC | 6 cut(s) | 431, 442, 452, 812, 823, 833 |
| Hpy99I | CGWCG | 1 cut(s) | 791 |
| HpyAV | CCTTC | 1 cut(s) | 1183 |
| HpyCH4III | ACNGT | 3 cut(s) | 304, 541, 816 |
| HpyF3I | CTNAG | 2 cut(s) | 372, 591 |
| Hsp92II | CATG | 4 cut(s) | 910, 922, 1250, 1267 |
| HspAI | GCGC | 2 cut(s) | 401, 929 |
| Kzo9I | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| LguI | GCTCTTC | 1 cut(s) | 1101 |
| LmnI | GCTCC | 4 cut(s) | 569, 788, 936, 1259 |
| Lsp1109I | GCAGC | 6 cut(s) | 307, 330, 347, 363, 684, 1000 |
| LweI | GCATC | 1 cut(s) | 16 |
| MaeIII | GTNAC | 2 cut(s) | 463, 1007 |
| MalI | GATC | 6 cut(s) | 128, 235, 388, 616, 641, 1154 |
| MboI | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| MboII | GAAGA | 7 cut(s) | 126, 136, 279, 618, 968, 1088, 1171 |
| MflI | RGATCY | 2 cut(s) | 126, 233 |
| MhlI | GDGCHC | 4 cut(s) | 312, 556, 725, 1254 |
| MlsI | TGGCCA | 2 cut(s) | 1128, 1291 |
| MluCI | AATT | 4 cut(s) | 57, 68, 900, 1204 |
| MluNI | TGGCCA | 2 cut(s) | 1128, 1291 |
| MlyI | GAGTC | 4 cut(s) | 150, 588, 1004, 1156 |
| MmeI | TCCRAC | 2 cut(s) | 531, 810 |
| Mox20I | TGGCCA | 2 cut(s) | 1128, 1291 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1095 |
| MscI | TGGCCA | 2 cut(s) | 1128, 1291 |
| MslI | CAYNNNNRTG | 1 cut(s) | 921 |
| Msp20I | TGGCCA | 2 cut(s) | 1128, 1291 |
| MspA1I | CMGCKG | 2 cut(s) | 371, 697 |
| MspR9I | CCNGG | 2 cut(s) | 520, 865 |
| MvnI | CGCG | 1 cut(s) | 929 |
| NciI | CCSGG | 2 cut(s) | 520, 865 |
| NdeII | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| NlaIII | CATG | 4 cut(s) | 910, 922, 1250, 1267 |
| NlaIV | GGNNCC | 4 cut(s) | 158, 408, 678, 1261 |
| NmeAIII | GCCGAG | 1 cut(s) | 389 |
| NmuCI | GTSAC | 2 cut(s) | 463, 1007 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PagI | TCATGA | 2 cut(s) | 906, 1246 |
| PciSI | GCTCTTC | 1 cut(s) | 1101 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 783 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1095 |
| PinAI | ACCGGT | 1 cut(s) | 150 |
| PkrI | GCNGC | 9 cut(s) | 297, 320, 354, 362, 370, 378, 699, 740, 990 |
| Ple19I | CGATCG | 1 cut(s) | 617 |
| PleI | GAGTC | 4 cut(s) | 149, 587, 1004, 1156 |
| PmaCI | CACGTG | 3 cut(s) | 315, 340, 728 |
| PmlI | CACGTG | 3 cut(s) | 315, 340, 728 |
| PpsI | GAGTC | 4 cut(s) | 149, 587, 1004, 1156 |
| Ppu21I | YACGTR | 3 cut(s) | 315, 340, 728 |
| PsiI | TTATAA | 1 cut(s) | 1083 |
| Psp124BI | GAGCTC | 1 cut(s) | 1254 |
| Psp1406I | AACGTT | 1 cut(s) | 1002 |
| PspCI | CACGTG | 3 cut(s) | 315, 340, 728 |
| PspFI | CCCAGC | 1 cut(s) | 679 |
| PspN4I | GGNNCC | 4 cut(s) | 158, 408, 678, 1261 |
| PspPI | GGNCC | 5 cut(s) | 156, 324, 406, 676, 768 |
| PstI | CTGCAG | 2 cut(s) | 297, 702 |
| PsuI | RGATCY | 2 cut(s) | 126, 233 |
| PvuI | CGATCG | 1 cut(s) | 617 |
| PvuII | CAGCTG | 1 cut(s) | 697 |
| RseI | CAYNNNNRTG | 1 cut(s) | 921 |
| SacI | GAGCTC | 1 cut(s) | 1254 |
| SapI | GCTCTTC | 1 cut(s) | 1101 |
| SatI | GCNGC | 9 cut(s) | 296, 319, 353, 361, 369, 377, 698, 739, 989 |
| Sau3AI | GATC | 6 cut(s) | 126, 233, 386, 614, 639, 1152 |
| Sau96I | GGNCC | 5 cut(s) | 156, 324, 406, 676, 768 |
| SchI | GAGTC | 4 cut(s) | 150, 588, 1004, 1156 |
| ScrFI | CCNGG | 2 cut(s) | 520, 865 |
| SduI | GDGCHC | 4 cut(s) | 312, 556, 725, 1254 |
| SfaNI | GCATC | 1 cut(s) | 16 |
| SfcI | CTRYAG | 2 cut(s) | 293, 698 |
| SinI | GGWCC | 2 cut(s) | 406, 768 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 921 |
| SmlI | CTYRAG | 1 cut(s) | 983 |
| SmoI | CTYRAG | 1 cut(s) | 983 |
| Sse9I | AATT | 4 cut(s) | 57, 68, 900, 1204 |
| SsiI | CCGC | 8 cut(s) | 113, 224, 353, 369, 410, 739, 888, 1051 |
| SstI | GAGCTC | 1 cut(s) | 1254 |
| StyD4I | CCNGG | 2 cut(s) | 518, 863 |
| TaaI | ACNGT | 3 cut(s) | 304, 541, 816 |
| TaqI | TCGA | 5 cut(s) | 208, 306, 617, 638, 1155 |
| TaqII | GACCGA | 2 cut(s) | 416, 797 |
| TasI | AATT | 4 cut(s) | 57, 68, 900, 1204 |
| TauI | GCSGC | 3 cut(s) | 355, 371, 741 |
| TscAI | CASTG | 3 cut(s) | 334, 770, 1194 |
| TseFI | GTSAC | 2 cut(s) | 463, 1007 |
| TseI | GCWGC | 6 cut(s) | 295, 318, 360, 376, 697, 988 |
| Tsp45I | GTSAC | 2 cut(s) | 463, 1007 |
| TspDTI | ATGAA | 5 cut(s) | 660, 935, 954, 1235, 1280 |
| TspRI | CASTG | 3 cut(s) | 334, 770, 1194 |
| VpaK11BI | GGWCC | 2 cut(s) | 406, 768 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 950 |
| XapI | RAATTY | 2 cut(s) | 57, 68 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 762, 969 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1095 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |