No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| Acc16I | TGCGCA | 1 cut(s) | 1380 |
| AccB1I | GGYRCC | 2 cut(s) | 1023, 1114 |
| AccII | CGCG | 1 cut(s) | 1341 |
| AccIII | TCCGGA | 1 cut(s) | 297 |
| AciI | CCGC | 6 cut(s) | 283, 466, 700, 1102, 1118, 1399 |
| AclWI | GGATC | 3 cut(s) | 54, 960, 1224 |
| AcsI | RAATTY | 2 cut(s) | 364, 767 |
| AcyI | GRCGYC | 3 cut(s) | 1166, 1178, 1196 |
| AfaI | GTAC | 1 cut(s) | 587 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 69, 1019, 1111, 1144 |
| AflII | CTTAAG | 1 cut(s) | 476 |
| AgsI | TTSAA | 2 cut(s) | 440, 715 |
| AjiI | CACGTC | 1 cut(s) | 191 |
| AjnI | CCWGG | 2 cut(s) | 492, 1200 |
| AluBI | AGCT | 7 cut(s) | 22, 104, 270, 542, 548, 901, 911 |
| AluI | AGCT | 7 cut(s) | 22, 104, 270, 542, 548, 901, 911 |
| Alw21I | GWGCWC | 1 cut(s) | 903 |
| Alw26I | GTCTC | 2 cut(s) | 835, 1341 |
| AlwI | GGATC | 3 cut(s) | 54, 960, 1224 |
| Ama87I | CYCGRG | 1 cut(s) | 506 |
| Aor13HI | TCCGGA | 1 cut(s) | 297 |
| AoxI | GGCC | 2 cut(s) | 178, 203 |
| ApaI | GGGCCC | 2 cut(s) | 182, 207 |
| ApeKI | GCWGC | 4 cut(s) | 101, 134, 196, 566 |
| ApoI | RAATTY | 2 cut(s) | 364, 767 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 744, 1271 |
| AspA2I | CCTAGG | 1 cut(s) | 1138 |
| AspLEI | GCGC | 2 cut(s) | 1010, 1381 |
| AspS9I | GGNCC | 7 cut(s) | 178, 179, 203, 204, 227, 1070, 1152 |
| AsuC2I | CCSGG | 2 cut(s) | 322, 1214 |
| AsuHPI | GGTGA | 1 cut(s) | 1201 |
| AvaI | CYCGRG | 1 cut(s) | 506 |
| AvaII | GGWCC | 3 cut(s) | 227, 1070, 1152 |
| AvrII | CCTAGG | 1 cut(s) | 1138 |
| BaeGI | GKGCMC | 3 cut(s) | 182, 207, 1117 |
| BanI | GGYRCC | 2 cut(s) | 1023, 1114 |
| BanII | GRGCYC | 3 cut(s) | 182, 207, 903 |
| BbsI | GAAGAC | 2 cut(s) | 612, 815 |
| Bbv12I | GWGCWC | 1 cut(s) | 903 |
| BbvI | GCAGC | 4 cut(s) | 113, 146, 208, 578 |
| BccI | CCATC | 9 cut(s) | 7, 479, 681, 835, 873, 1132, 1168, 1190, 1271 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 90, 124 |
| BciT130I | CCWGG | 2 cut(s) | 494, 1202 |
| BciVI | GTATCC | 2 cut(s) | 490, 1045 |
| BclI | TGATCA | 1 cut(s) | 85 |
| BcnI | CCSGG | 2 cut(s) | 322, 1214 |
| BcoDI | GTCTC | 2 cut(s) | 835, 1341 |
| BfaI | CTAG | 9 cut(s) | 92, 174, 290, 513, 677, 1134, 1139, 1251, 1359 |
| BfmI | CTRYAG | 1 cut(s) | 772 |
| BfrI | CTTAAG | 1 cut(s) | 476 |
| BfuI | GTATCC | 2 cut(s) | 490, 1045 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 575 |
| BisI | GCNGC | 4 cut(s) | 102, 135, 197, 567 |
| BlnI | CCTAGG | 1 cut(s) | 1138 |
| BlsI | GCNGC | 4 cut(s) | 103, 136, 198, 568 |
| Bme1390I | CCNGG | 4 cut(s) | 322, 494, 1202, 1214 |
| Bme18I | GGWCC | 3 cut(s) | 227, 1070, 1152 |
| BmeT110I | CYCGRG | 1 cut(s) | 506 |
| BmgBI | CACGTC | 1 cut(s) | 191 |
| BmgT120I | GGNCC | 7 cut(s) | 178, 179, 203, 204, 227, 1070, 1152 |
| BmrFI | CCNGG | 4 cut(s) | 322, 494, 1202, 1214 |
| BmsI | GCATC | 2 cut(s) | 481, 1345 |
| BpiI | GAAGAC | 2 cut(s) | 612, 815 |
| BpuEI | CTTGAG | 2 cut(s) | 134, 528 |
| BpuMI | CCSGG | 2 cut(s) | 322, 1214 |
| BsaHI | GRCGYC | 3 cut(s) | 1166, 1178, 1196 |
| BsaI | GGTCTC | 1 cut(s) | 1341 |
| BsaJI | CCNNGG | 4 cut(s) | 1138, 1169, 1200, 1212 |
| BsaWI | WCCGGW | 2 cut(s) | 297, 357 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 69, 1019, 1111, 1144 |
| Bse1I | ACTGG | 2 cut(s) | 436, 1337 |
| Bse3DI | GCAATG | 1 cut(s) | 655 |
| BseAI | TCCGGA | 1 cut(s) | 297 |
| BseBI | CCWGG | 2 cut(s) | 494, 1202 |
| BseDI | CCNNGG | 4 cut(s) | 1138, 1169, 1200, 1212 |
| BseGI | GGATG | 4 cut(s) | 18, 1124, 1179, 1219 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 69, 1019, 1111, 1144 |
| BseMI | GCAATG | 1 cut(s) | 655 |
| BseMII | CTCAG | 2 cut(s) | 78, 750 |
| BseNI | ACTGG | 2 cut(s) | 436, 1337 |
| BseSI | GKGCMC | 3 cut(s) | 182, 207, 1117 |
| BseXI | GCAGC | 4 cut(s) | 113, 146, 208, 578 |
| Bsh1236I | CGCG | 1 cut(s) | 1341 |
| Bsh1285I | CGRYCG | 1 cut(s) | 283 |
| BshFI | GGCC | 2 cut(s) | 180, 205 |
| BshNI | GGYRCC | 2 cut(s) | 1023, 1114 |
| BsiEI | CGRYCG | 1 cut(s) | 283 |
| BsiHKAI | GWGCWC | 1 cut(s) | 903 |
| BsiHKCI | CYCGRG | 1 cut(s) | 506 |
| BsiSI | CCGG | 5 cut(s) | 298, 309, 321, 358, 1214 |
| BslFI | GGGAC | 4 cut(s) | 240, 265, 1138, 1306 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 69, 1019, 1111, 1144 |
| BsmAI | GTCTC | 2 cut(s) | 835, 1341 |
| BsmBI | CGTCTC | 1 cut(s) | 835 |
| BsmFI | GGGAC | 4 cut(s) | 240, 265, 1138, 1306 |
| BsnI | GGCC | 2 cut(s) | 180, 205 |
| Bso31I | GGTCTC | 1 cut(s) | 1341 |
| BsoBI | CYCGRG | 1 cut(s) | 506 |
| Bsp120I | GGGCCC | 2 cut(s) | 178, 203 |
| Bsp1286I | GDGCHC | 4 cut(s) | 182, 207, 903, 1117 |
| Bsp13I | TCCGGA | 1 cut(s) | 297 |
| Bsp143I | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| Bsp19I | CCATGG | 1 cut(s) | 1169 |
| Bsp68I | TCGCGA | 1 cut(s) | 1341 |
| BspACI | CCGC | 6 cut(s) | 283, 466, 700, 1102, 1118, 1399 |
| BspANI | GGCC | 2 cut(s) | 180, 205 |
| BspCNI | CTCAG | 2 cut(s) | 77, 749 |
| BspEI | TCCGGA | 1 cut(s) | 297 |
| BspFNI | CGCG | 1 cut(s) | 1341 |
| BspHI | TCATGA | 1 cut(s) | 895 |
| BspPI | GGATC | 3 cut(s) | 54, 960, 1224 |
| BspT107I | GGYRCC | 2 cut(s) | 1023, 1114 |
| BspTI | CTTAAG | 1 cut(s) | 476 |
| BspTNI | GGTCTC | 1 cut(s) | 1341 |
| BsrDI | GCAATG | 1 cut(s) | 655 |
| BsrI | ACTGG | 2 cut(s) | 436, 1337 |
| BssECI | CCNNGG | 4 cut(s) | 1138, 1169, 1200, 1212 |
| BssMI | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| BssNI | GRCGYC | 3 cut(s) | 1166, 1178, 1196 |
| BssT1I | CCWWGG | 2 cut(s) | 1138, 1169 |
| Bst2UI | CCWGG | 2 cut(s) | 494, 1202 |
| Bst4CI | ACNGT | 1 cut(s) | 532 |
| BstACI | GRCGYC | 3 cut(s) | 1166, 1178, 1196 |
| BstAFI | CTTAAG | 1 cut(s) | 476 |
| BstC8I | GCNNGC | 3 cut(s) | 287, 470, 540 |
| BstDEI | CTNAG | 5 cut(s) | 64, 571, 736, 849, 1046 |
| BstDSI | CCRYGG | 1 cut(s) | 1169 |
| BstEII | GGTNACC | 1 cut(s) | 1097 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 67 |
| BstF5I | GGATG | 4 cut(s) | 18, 1124, 1179, 1219 |
| BstFNI | CGCG | 1 cut(s) | 1341 |
| BstHHI | GCGC | 2 cut(s) | 1010, 1381 |
| BstKTI | GATC | 5 cut(s) | 62, 88, 786, 968, 1219 |
| BstMAI | GTCTC | 2 cut(s) | 835, 1341 |
| BstMBI | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| BstMCI | CGRYCG | 1 cut(s) | 283 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 140, 202, 242, 267, 554, 563, 575 |
| BstNI | CCWGG | 2 cut(s) | 494, 1202 |
| BstNSI | RCATGY | 1 cut(s) | 289 |
| BstPI | GGTNACC | 1 cut(s) | 1097 |
| BstSCI | CCNGG | 4 cut(s) | 320, 492, 1200, 1212 |
| BstSFI | CTRYAG | 1 cut(s) | 772 |
| BstSLI | GKGCMC | 3 cut(s) | 182, 207, 1117 |
| BstUI | CGCG | 1 cut(s) | 1341 |
| BstV1I | GCAGC | 4 cut(s) | 113, 146, 208, 578 |
| BstV2I | GAAGAC | 2 cut(s) | 612, 815 |
| BstX2I | RGATCY | 2 cut(s) | 59, 965 |
| BstYI | RGATCY | 2 cut(s) | 59, 965 |
| BsuI | GTATCC | 2 cut(s) | 490, 1045 |
| BsuRI | GGCC | 2 cut(s) | 180, 205 |
| BtgI | CCRYGG | 1 cut(s) | 1169 |
| BtgZI | GCGATG | 1 cut(s) | 809 |
| BtrI | CACGTC | 1 cut(s) | 191 |
| BtsCI | GGATG | 4 cut(s) | 18, 1124, 1179, 1219 |
| BtsI | GCAGTG | 3 cut(s) | 207, 231, 256 |
| BtsIMutI | CAGTG | 4 cut(s) | 207, 231, 256, 921 |
| BtuMI | TCGCGA | 1 cut(s) | 1341 |
| Cac8I | GCNNGC | 3 cut(s) | 287, 470, 540 |
| CciI | TCATGA | 1 cut(s) | 895 |
| CfoI | GCGC | 2 cut(s) | 1010, 1381 |
| Cfr13I | GGNCC | 7 cut(s) | 178, 179, 203, 204, 227, 1070, 1152 |
| CseI | GACGC | 3 cut(s) | 1167, 1174, 1204 |
| Csp6I | GTAC | 1 cut(s) | 586 |
| CviAII | CATG | 7 cut(s) | 238, 286, 896, 1162, 1170, 1186, 1318 |
| CviQI | GTAC | 1 cut(s) | 586 |
| DdeI | CTNAG | 5 cut(s) | 64, 571, 736, 849, 1046 |
| DpnI | GATC | 5 cut(s) | 61, 87, 785, 967, 1218 |
| DpnII | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| EciI | GGCGGA | 1 cut(s) | 455 |
| Ecl136II | GAGCTC | 1 cut(s) | 901 |
| Eco130I | CCWWGG | 2 cut(s) | 1138, 1169 |
| Eco24I | GRGCYC | 3 cut(s) | 182, 207, 903 |
| Eco31I | GGTCTC | 1 cut(s) | 1341 |
| Eco47I | GGWCC | 3 cut(s) | 227, 1070, 1152 |
| Eco53kI | GAGCTC | 1 cut(s) | 901 |
| Eco88I | CYCGRG | 1 cut(s) | 506 |
| Eco91I | GGTNACC | 1 cut(s) | 1097 |
| EcoICRI | GAGCTC | 1 cut(s) | 901 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 3 cut(s) | 178, 203, 227 |
| EcoO65I | GGTNACC | 1 cut(s) | 1097 |
| EcoRI | GAATTC | 1 cut(s) | 767 |
| EcoRII | CCWGG | 2 cut(s) | 492, 1200 |
| EcoT14I | CCWWGG | 2 cut(s) | 1138, 1169 |
| EcoT38I | GRGCYC | 3 cut(s) | 182, 207, 903 |
| ErhI | CCWWGG | 2 cut(s) | 1138, 1169 |
| Esp3I | CGTCTC | 1 cut(s) | 835 |
| FaeI | CATG | 7 cut(s) | 241, 289, 899, 1165, 1173, 1189, 1321 |
| FaqI | GGGAC | 4 cut(s) | 240, 265, 1138, 1306 |
| FatI | CATG | 7 cut(s) | 237, 285, 895, 1161, 1169, 1185, 1317 |
| FbaI | TGATCA | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 4 cut(s) | 102, 135, 197, 567 |
| FokI | GGATG | 4 cut(s) | 25, 1111, 1186, 1206 |
| FriOI | GRGCYC | 3 cut(s) | 182, 207, 903 |
| Fsp4HI | GCNGC | 4 cut(s) | 102, 135, 197, 567 |
| FspAI | RTGCGCAY | 1 cut(s) | 1380 |
| FspBI | CTAG | 9 cut(s) | 92, 174, 290, 513, 677, 1134, 1139, 1251, 1359 |
| FspI | TGCGCA | 1 cut(s) | 1380 |
| GlaI | GCGC | 2 cut(s) | 1009, 1380 |
| GluI | GCNGC | 4 cut(s) | 102, 135, 197, 567 |
| HaeIII | GGCC | 2 cut(s) | 180, 205 |
| HapII | CCGG | 5 cut(s) | 298, 309, 321, 358, 1214 |
| HgaI | GACGC | 3 cut(s) | 1167, 1174, 1204 |
| HhaI | GCGC | 2 cut(s) | 1010, 1381 |
| Hin1I | GRCGYC | 3 cut(s) | 1166, 1178, 1196 |
| Hin1II | CATG | 7 cut(s) | 241, 289, 899, 1165, 1173, 1189, 1321 |
| Hin6I | GCGC | 2 cut(s) | 1008, 1379 |
| HinP1I | GCGC | 2 cut(s) | 1008, 1379 |
| HincII | GTYRAC | 2 cut(s) | 218, 277 |
| HindII | GTYRAC | 2 cut(s) | 218, 277 |
| HindIII | AAGCTT | 1 cut(s) | 546 |
| HinfI | GANTC | 6 cut(s) | 253, 489, 502, 659, 811, 992 |
| HpaII | CCGG | 5 cut(s) | 298, 309, 321, 358, 1214 |
| HphI | GGTGA | 1 cut(s) | 1201 |
| Hpy166II | GTNNAC | 3 cut(s) | 218, 277, 1260 |
| Hpy188I | TCNGA | 4 cut(s) | 59, 334, 739, 1366 |
| Hpy8I | GTNNAC | 3 cut(s) | 218, 277, 1260 |
| HpyAV | CCTTC | 2 cut(s) | 609, 1088 |
| HpyCH4III | ACNGT | 1 cut(s) | 532 |
| HpyCH4IV | ACGT | 2 cut(s) | 190, 1063 |
| HpyCH4V | TGCA | 4 cut(s) | 101, 212, 836, 1287 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 140, 202, 242, 267, 554, 563, 575 |
| HpyF3I | CTNAG | 5 cut(s) | 64, 571, 736, 849, 1046 |
| HpySE526I | ACGT | 2 cut(s) | 190, 1063 |
| Hsp92I | GRCGYC | 3 cut(s) | 1166, 1178, 1196 |
| Hsp92II | CATG | 7 cut(s) | 241, 289, 899, 1165, 1173, 1189, 1321 |
| HspAI | GCGC | 2 cut(s) | 1008, 1379 |
| KflI | GGGWCCC | 1 cut(s) | 227 |
| Kpn2I | TCCGGA | 1 cut(s) | 297 |
| Ksp22I | TGATCA | 1 cut(s) | 85 |
| Kzo9I | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| LmnI | GCTCC | 1 cut(s) | 908 |
| Lsp1109I | GCAGC | 4 cut(s) | 113, 146, 208, 578 |
| LweI | GCATC | 2 cut(s) | 481, 1345 |
| MaeI | CTAG | 9 cut(s) | 92, 174, 290, 513, 677, 1134, 1139, 1251, 1359 |
| MaeII | ACGT | 2 cut(s) | 190, 1063 |
| MaeIII | GTNAC | 5 cut(s) | 392, 656, 868, 919, 1097 |
| MalI | GATC | 5 cut(s) | 61, 87, 785, 967, 1218 |
| MboI | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| MboII | GAAGA | 4 cut(s) | 617, 814, 820, 961 |
| MfeI | CAATTG | 1 cut(s) | 1233 |
| MflI | RGATCY | 2 cut(s) | 59, 965 |
| MhlI | GDGCHC | 4 cut(s) | 182, 207, 903, 1117 |
| MluCI | AATT | 6 cut(s) | 364, 404, 767, 958, 997, 1233 |
| MlyI | GAGTC | 3 cut(s) | 247, 653, 805 |
| MmeI | TCCRAC | 1 cut(s) | 1282 |
| MnlI | CCTC | 8 cut(s) | 3, 66, 73, 124, 568, 707, 1013, 1131 |
| MroI | TCCGGA | 1 cut(s) | 297 |
| MroXI | GAANNNNTTC | 2 cut(s) | 744, 1271 |
| MseI | TTAA | 5 cut(s) | 96, 477, 753, 761, 860 |
| MslI | CAYNNNNRTG | 3 cut(s) | 236, 1187, 1190 |
| MspCI | CTTAAG | 1 cut(s) | 476 |
| MspI | CCGG | 5 cut(s) | 298, 309, 321, 358, 1214 |
| MspR9I | CCNGG | 4 cut(s) | 322, 494, 1202, 1214 |
| MunI | CAATTG | 1 cut(s) | 1233 |
| MvaI | CCWGG | 2 cut(s) | 494, 1202 |
| MvnI | CGCG | 1 cut(s) | 1341 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 140, 202, 242, 267, 554, 563, 575 |
| NciI | CCSGG | 2 cut(s) | 322, 1214 |
| NcoI | CCATGG | 1 cut(s) | 1169 |
| NdeII | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| NlaIII | CATG | 7 cut(s) | 241, 289, 899, 1165, 1173, 1189, 1321 |
| NmuCI | GTSAC | 2 cut(s) | 656, 919 |
| NruI | TCGCGA | 1 cut(s) | 1341 |
| NsbI | TGCGCA | 1 cut(s) | 1380 |
| NspI | RCATGY | 1 cut(s) | 289 |
| PaeI | GCATGC | 1 cut(s) | 289 |
| PaeR7I | CTCGAG | 1 cut(s) | 506 |
| PagI | TCATGA | 1 cut(s) | 895 |
| PdmI | GAANNNNTTC | 2 cut(s) | 744, 1271 |
| PfeI | GAWTC | 3 cut(s) | 489, 502, 992 |
| PfoI | TCCNGGA | 1 cut(s) | 492 |
| PkrI | GCNGC | 4 cut(s) | 103, 136, 198, 568 |
| PleI | GAGTC | 3 cut(s) | 247, 653, 805 |
| PpsI | GAGTC | 3 cut(s) | 247, 653, 805 |
| PpuMI | RGGWCCY | 1 cut(s) | 227 |
| Psp124BI | GAGCTC | 1 cut(s) | 903 |
| Psp5II | RGGWCCY | 1 cut(s) | 227 |
| Psp6I | CCWGG | 2 cut(s) | 492, 1200 |
| PspEI | GGTNACC | 1 cut(s) | 1097 |
| PspGI | CCWGG | 2 cut(s) | 492, 1200 |
| PspOMI | GGGCCC | 2 cut(s) | 178, 203 |
| PspPI | GGNCC | 7 cut(s) | 178, 179, 203, 204, 227, 1070, 1152 |
| PspPPI | RGGWCCY | 1 cut(s) | 227 |
| PsuI | RGATCY | 2 cut(s) | 59, 965 |
| RruI | TCGCGA | 1 cut(s) | 1341 |
| RsaI | GTAC | 1 cut(s) | 587 |
| RsaNI | GTAC | 1 cut(s) | 586 |
| RseI | CAYNNNNRTG | 3 cut(s) | 236, 1187, 1190 |
| SacI | GAGCTC | 1 cut(s) | 903 |
| SaqAI | TTAA | 5 cut(s) | 96, 477, 753, 761, 860 |
| SatI | GCNGC | 4 cut(s) | 102, 135, 197, 567 |
| Sau3AI | GATC | 5 cut(s) | 59, 85, 783, 965, 1216 |
| Sau96I | GGNCC | 7 cut(s) | 178, 179, 203, 204, 227, 1070, 1152 |
| SchI | GAGTC | 3 cut(s) | 247, 653, 805 |
| ScrFI | CCNGG | 4 cut(s) | 322, 494, 1202, 1214 |
| SduI | GDGCHC | 4 cut(s) | 182, 207, 903, 1117 |
| SfaNI | GCATC | 2 cut(s) | 481, 1345 |
| SfcI | CTRYAG | 1 cut(s) | 772 |
| Sfr274I | CTCGAG | 1 cut(s) | 506 |
| SinI | GGWCC | 3 cut(s) | 227, 1070, 1152 |
| SlaI | CTCGAG | 1 cut(s) | 506 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 236, 1187, 1190 |
| SmlI | CTYRAG | 4 cut(s) | 149, 476, 506, 543 |
| SmoI | CTYRAG | 4 cut(s) | 149, 476, 506, 543 |
| SphI | GCATGC | 1 cut(s) | 289 |
| Sse9I | AATT | 6 cut(s) | 364, 404, 767, 958, 997, 1233 |
| SsiI | CCGC | 6 cut(s) | 283, 466, 700, 1102, 1118, 1399 |
| SspMI | CTAG | 9 cut(s) | 92, 174, 290, 513, 677, 1134, 1139, 1251, 1359 |
| SstI | GAGCTC | 1 cut(s) | 903 |
| StyD4I | CCNGG | 4 cut(s) | 320, 492, 1200, 1212 |
| StyI | CCWWGG | 2 cut(s) | 1138, 1169 |
| TaaI | ACNGT | 1 cut(s) | 532 |
| TaiI | ACGT | 2 cut(s) | 193, 1066 |
| TaqI | TCGA | 6 cut(s) | 110, 483, 507, 962, 1265, 1275 |
| TaqII | GACCGA | 1 cut(s) | 262 |
| TasI | AATT | 6 cut(s) | 364, 404, 767, 958, 997, 1233 |
| TfiI | GAWTC | 3 cut(s) | 489, 502, 992 |
| Tru1I | TTAA | 5 cut(s) | 96, 477, 753, 761, 860 |
| Tru9I | TTAA | 5 cut(s) | 96, 477, 753, 761, 860 |
| TscAI | CASTG | 4 cut(s) | 214, 238, 263, 928 |
| TseFI | GTSAC | 2 cut(s) | 656, 919 |
| TseI | GCWGC | 4 cut(s) | 101, 134, 196, 566 |
| Tsp45I | GTSAC | 2 cut(s) | 656, 919 |
| TspDTI | ATGAA | 6 cut(s) | 59, 96, 611, 884, 929, 1334 |
| TspGWI | ACGGA | 2 cut(s) | 644, 958 |
| TspRI | CASTG | 4 cut(s) | 214, 238, 263, 928 |
| Vha464I | CTTAAG | 1 cut(s) | 476 |
| VpaK11BI | GGWCC | 3 cut(s) | 227, 1070, 1152 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 67 |
| XapI | RAATTY | 2 cut(s) | 364, 767 |
| XceI | RCATGY | 1 cut(s) | 289 |
| XhoI | CTCGAG | 1 cut(s) | 506 |
| XmaJI | CCTAGG | 1 cut(s) | 1138 |
| XmnI | GAANNNNTTC | 2 cut(s) | 744, 1271 |
| XspI | CTAG | 9 cut(s) | 92, 174, 290, 513, 677, 1134, 1139, 1251, 1359 |