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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 594 |
| AccB1I | GGYRCC | 1 cut(s) | 549 |
| AciI | CCGC | 1 cut(s) | 849 |
| AclWI | GGATC | 3 cut(s) | 416, 513, 526 |
| AcoI | YGGCCR | 1 cut(s) | 694 |
| AcsI | RAATTY | 2 cut(s) | 281, 293 |
| AcyI | GRCGYC | 2 cut(s) | 550, 708 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AgsI | TTSAA | 1 cut(s) | 241 |
| AluBI | AGCT | 6 cut(s) | 26, 427, 437, 749, 830, 881 |
| AluI | AGCT | 6 cut(s) | 26, 427, 437, 749, 830, 881 |
| Alw21I | GWGCWC | 1 cut(s) | 832 |
| Alw26I | GTCTC | 2 cut(s) | 157, 361 |
| AlwI | GGATC | 3 cut(s) | 416, 513, 526 |
| AoxI | GGCC | 1 cut(s) | 694 |
| ApeKI | GCWGC | 1 cut(s) | 44 |
| ApoI | RAATTY | 2 cut(s) | 281, 293 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 270 |
| AspLEI | GCGC | 1 cut(s) | 552 |
| AspS9I | GGNCC | 1 cut(s) | 596 |
| AsuHPI | GGTGA | 2 cut(s) | 703, 838 |
| AvaII | GGWCC | 1 cut(s) | 596 |
| BaeGI | GKGCMC | 1 cut(s) | 817 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BamHI | GGATCC | 1 cut(s) | 518 |
| BanI | GGYRCC | 1 cut(s) | 549 |
| BanII | GRGCYC | 1 cut(s) | 832 |
| BauI | CACGAG | 1 cut(s) | 831 |
| BbsI | GAAGAC | 2 cut(s) | 138, 341 |
| Bbv12I | GWGCWC | 1 cut(s) | 832 |
| BbvI | GCAGC | 1 cut(s) | 56 |
| BccI | CCATC | 3 cut(s) | 207, 361, 735 |
| BciVI | GTATCC | 1 cut(s) | 571 |
| BclI | TGATCA | 1 cut(s) | 805 |
| BcoDI | GTCTC | 2 cut(s) | 157, 361 |
| BfaI | CTAG | 2 cut(s) | 138, 203 |
| BfmI | CTRYAG | 1 cut(s) | 399 |
| BfoI | RGCGCY | 1 cut(s) | 553 |
| BfuI | GTATCC | 1 cut(s) | 571 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 53 |
| BisI | GCNGC | 1 cut(s) | 45 |
| BlsI | GCNGC | 1 cut(s) | 46 |
| Bme18I | GGWCC | 1 cut(s) | 596 |
| BmgT120I | GGNCC | 1 cut(s) | 596 |
| BmiI | GGNNCC | 3 cut(s) | 520, 551, 650 |
| BpiI | GAAGAC | 2 cut(s) | 138, 341 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 1 cut(s) | 6 |
| BsaHI | GRCGYC | 2 cut(s) | 550, 708 |
| BsaI | GGTCTC | 1 cut(s) | 157 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| BseGI | GGATG | 4 cut(s) | 75, 103, 177, 465 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BseSI | GKGCMC | 1 cut(s) | 817 |
| BseXI | GCAGC | 1 cut(s) | 56 |
| BshFI | GGCC | 1 cut(s) | 696 |
| BshNI | GGYRCC | 1 cut(s) | 549 |
| BsiHKAI | GWGCWC | 1 cut(s) | 832 |
| BsmAI | GTCTC | 2 cut(s) | 157, 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| BsnI | GGCC | 1 cut(s) | 696 |
| Bso31I | GGTCTC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 2 cut(s) | 817, 832 |
| Bsp143I | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| BspACI | CCGC | 1 cut(s) | 849 |
| BspANI | GGCC | 1 cut(s) | 696 |
| BspHI | TCATGA | 1 cut(s) | 904 |
| BspLI | GGNNCC | 3 cut(s) | 520, 551, 650 |
| BspMAI | CTGCAG | 1 cut(s) | 403 |
| BspPI | GGATC | 3 cut(s) | 416, 513, 526 |
| BspT107I | GGYRCC | 1 cut(s) | 549 |
| BspTNI | GGTCTC | 1 cut(s) | 157 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssMI | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| BssNI | GRCGYC | 2 cut(s) | 550, 708 |
| BssSI | CACGAG | 1 cut(s) | 831 |
| Bst2BI | CACGAG | 1 cut(s) | 831 |
| Bst4CI | ACNGT | 1 cut(s) | 10 |
| Bst6I | CTCTTC | 1 cut(s) | 649 |
| BstACI | GRCGYC | 2 cut(s) | 550, 708 |
| BstDEI | CTNAG | 5 cut(s) | 49, 375, 540, 572, 720 |
| BstEII | GGTNACC | 1 cut(s) | 623 |
| BstF5I | GGATG | 4 cut(s) | 75, 103, 177, 465 |
| BstH2I | RGCGCY | 1 cut(s) | 553 |
| BstHHI | GCGC | 1 cut(s) | 552 |
| BstKTI | GATC | 5 cut(s) | 202, 411, 521, 808, 904 |
| BstMAI | GTCTC | 2 cut(s) | 157, 361 |
| BstMBI | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 53, 556, 746, 857, 878 |
| BstPI | GGTNACC | 1 cut(s) | 623 |
| BstSFI | CTRYAG | 1 cut(s) | 399 |
| BstSLI | GKGCMC | 1 cut(s) | 817 |
| BstV1I | GCAGC | 1 cut(s) | 56 |
| BstV2I | GAAGAC | 2 cut(s) | 138, 341 |
| BstX2I | RGATCY | 1 cut(s) | 518 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 704 |
| BstYI | RGATCY | 1 cut(s) | 518 |
| BsuI | GTATCC | 1 cut(s) | 571 |
| BsuRI | GGCC | 1 cut(s) | 696 |
| BtgZI | GCGATG | 1 cut(s) | 335 |
| BtsCI | GGATG | 4 cut(s) | 75, 103, 177, 465 |
| CciI | TCATGA | 1 cut(s) | 904 |
| CfoI | GCGC | 1 cut(s) | 552 |
| Cfr13I | GGNCC | 1 cut(s) | 596 |
| CseI | GACGC | 2 cut(s) | 697, 746 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviAII | CATG | 3 cut(s) | 458, 496, 905 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 5 cut(s) | 49, 375, 540, 572, 720 |
| DinI | GGCGCC | 1 cut(s) | 551 |
| DpnI | GATC | 5 cut(s) | 201, 410, 520, 807, 903 |
| DpnII | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 594 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 594 |
| EaeI | YGGCCR | 1 cut(s) | 694 |
| Eam1104I | CTCTTC | 1 cut(s) | 649 |
| EarI | CTCTTC | 1 cut(s) | 649 |
| Ecl136II | GAGCTC | 1 cut(s) | 830 |
| Eco24I | GRGCYC | 1 cut(s) | 832 |
| Eco31I | GGTCTC | 1 cut(s) | 157 |
| Eco47I | GGWCC | 1 cut(s) | 596 |
| Eco53kI | GAGCTC | 1 cut(s) | 830 |
| Eco91I | GGTNACC | 1 cut(s) | 623 |
| EcoICRI | GAGCTC | 1 cut(s) | 830 |
| EcoO65I | GGTNACC | 1 cut(s) | 623 |
| EcoT38I | GRGCYC | 1 cut(s) | 832 |
| EgeI | GGCGCC | 1 cut(s) | 551 |
| EheI | GGCGCC | 1 cut(s) | 551 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaeI | CATG | 3 cut(s) | 461, 499, 908 |
| FatI | CATG | 3 cut(s) | 457, 495, 904 |
| FauNDI | CATATG | 1 cut(s) | 93 |
| FbaI | TGATCA | 1 cut(s) | 805 |
| Fnu4HI | GCNGC | 1 cut(s) | 45 |
| FokI | GGATG | 4 cut(s) | 62, 110, 164, 452 |
| FriOI | GRGCYC | 1 cut(s) | 832 |
| Fsp4HI | GCNGC | 1 cut(s) | 45 |
| FspBI | CTAG | 2 cut(s) | 138, 203 |
| GlaI | GCGC | 1 cut(s) | 551 |
| GluI | GCNGC | 1 cut(s) | 45 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HaeII | RGCGCY | 1 cut(s) | 553 |
| HaeIII | GGCC | 1 cut(s) | 696 |
| HgaI | GACGC | 2 cut(s) | 697, 746 |
| HhaI | GCGC | 1 cut(s) | 552 |
| Hin1I | GRCGYC | 2 cut(s) | 550, 708 |
| Hin1II | CATG | 3 cut(s) | 461, 499, 908 |
| Hin6I | GCGC | 1 cut(s) | 550 |
| HinP1I | GCGC | 1 cut(s) | 550 |
| HincII | GTYRAC | 1 cut(s) | 662 |
| HindII | GTYRAC | 1 cut(s) | 662 |
| HindIII | AAGCTT | 1 cut(s) | 24 |
| HinfI | GANTC | 5 cut(s) | 85, 101, 134, 337, 492 |
| HphI | GGTGA | 2 cut(s) | 703, 838 |
| Hpy166II | GTNNAC | 2 cut(s) | 305, 662 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 805 |
| Hpy188III | TCNNGA | 9 cut(s) | 138, 197, 203, 251, 489, 516, 789, 833, 905 |
| Hpy8I | GTNNAC | 2 cut(s) | 305, 662 |
| HpyAV | CCTTC | 4 cut(s) | 135, 358, 540, 614 |
| HpyCH4III | ACNGT | 1 cut(s) | 10 |
| HpyCH4IV | ACGT | 2 cut(s) | 589, 664 |
| HpyCH4V | TGCA | 2 cut(s) | 362, 401 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 53, 556, 746, 857, 878 |
| HpyF3I | CTNAG | 5 cut(s) | 49, 375, 540, 572, 720 |
| HpySE526I | ACGT | 2 cut(s) | 589, 664 |
| Hsp92I | GRCGYC | 2 cut(s) | 550, 708 |
| Hsp92II | CATG | 3 cut(s) | 461, 499, 908 |
| HspAI | GCGC | 1 cut(s) | 550 |
| KasI | GGCGCC | 1 cut(s) | 549 |
| Ksp22I | TGATCA | 1 cut(s) | 805 |
| Kzo9I | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| LmnI | GCTCC | 2 cut(s) | 111, 434 |
| LpnPI | CCDG | 5 cut(s) | 122, 203, 210, 387, 678 |
| Lsp1109I | GCAGC | 1 cut(s) | 56 |
| MaeI | CTAG | 2 cut(s) | 138, 203 |
| MaeII | ACGT | 2 cut(s) | 589, 664 |
| MaeIII | GTNAC | 6 cut(s) | 182, 394, 623, 683, 709, 844 |
| MalI | GATC | 5 cut(s) | 201, 410, 520, 807, 903 |
| MboI | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| MboII | GAAGA | 9 cut(s) | 44, 140, 143, 173, 346, 666, 848, 911, 920 |
| MflI | RGATCY | 1 cut(s) | 518 |
| MhlI | GDGCHC | 2 cut(s) | 817, 832 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluCI | AATT | 6 cut(s) | 281, 293, 387, 484, 523, 840 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| Mly113I | GGCGCC | 1 cut(s) | 550 |
| MlyI | GAGTC | 3 cut(s) | 79, 128, 331 |
| MnlI | CCTC | 5 cut(s) | 233, 650, 670, 674, 700 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| MroXI | GAANNNNTTC | 1 cut(s) | 270 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 2 cut(s) | 279, 287 |
| MslI | CAYNNNNRTG | 6 cut(s) | 80, 96, 470, 702, 732, 909 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 53, 556, 746, 857, 878 |
| NarI | GGCGCC | 1 cut(s) | 550 |
| NdeI | CATATG | 1 cut(s) | 93 |
| NdeII | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| NlaIII | CATG | 3 cut(s) | 461, 499, 908 |
| NlaIV | GGNNCC | 3 cut(s) | 520, 551, 650 |
| NmuCI | GTSAC | 2 cut(s) | 709, 844 |
| PagI | TCATGA | 1 cut(s) | 904 |
| PdmI | GAANNNNTTC | 1 cut(s) | 270 |
| PfeI | GAWTC | 2 cut(s) | 101, 492 |
| PkrI | GCNGC | 1 cut(s) | 46 |
| PleI | GAGTC | 3 cut(s) | 79, 128, 331 |
| PluTI | GGCGCC | 1 cut(s) | 553 |
| PpsI | GAGTC | 3 cut(s) | 79, 128, 331 |
| Psp124BI | GAGCTC | 1 cut(s) | 832 |
| PspEI | GGTNACC | 1 cut(s) | 623 |
| PspN4I | GGNNCC | 3 cut(s) | 520, 551, 650 |
| PspPI | GGNCC | 1 cut(s) | 596 |
| PstI | CTGCAG | 1 cut(s) | 403 |
| PsuI | RGATCY | 1 cut(s) | 518 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| RseI | CAYNNNNRTG | 6 cut(s) | 80, 96, 470, 702, 732, 909 |
| SacI | GAGCTC | 1 cut(s) | 832 |
| SaqAI | TTAA | 2 cut(s) | 279, 287 |
| SatI | GCNGC | 1 cut(s) | 45 |
| Sau3AI | GATC | 5 cut(s) | 199, 408, 518, 805, 901 |
| Sau96I | GGNCC | 1 cut(s) | 596 |
| SchI | GAGTC | 3 cut(s) | 79, 128, 331 |
| SduI | GDGCHC | 2 cut(s) | 817, 832 |
| SfcI | CTRYAG | 1 cut(s) | 399 |
| SfoI | GGCGCC | 1 cut(s) | 551 |
| SinI | GGWCC | 1 cut(s) | 596 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 80, 96, 470, 702, 732, 909 |
| SmlI | CTYRAG | 1 cut(s) | 21 |
| SmoI | CTYRAG | 1 cut(s) | 21 |
| Sse9I | AATT | 6 cut(s) | 281, 293, 387, 484, 523, 840 |
| SsiI | CCGC | 1 cut(s) | 849 |
| SspDI | GGCGCC | 1 cut(s) | 549 |
| SspMI | CTAG | 2 cut(s) | 138, 203 |
| SstI | GAGCTC | 1 cut(s) | 832 |
| TaaI | ACNGT | 1 cut(s) | 10 |
| TaiI | ACGT | 2 cut(s) | 592, 667 |
| TaqI | TCGA | 4 cut(s) | 159, 385, 488, 790 |
| TasI | AATT | 6 cut(s) | 281, 293, 387, 484, 523, 840 |
| TfiI | GAWTC | 2 cut(s) | 101, 492 |
| Tru1I | TTAA | 2 cut(s) | 279, 287 |
| Tru9I | TTAA | 2 cut(s) | 279, 287 |
| TseFI | GTSAC | 2 cut(s) | 709, 844 |
| TseI | GCWGC | 1 cut(s) | 44 |
| Tsp45I | GTSAC | 2 cut(s) | 709, 844 |
| TspDTI | ATGAA | 7 cut(s) | 137, 141, 410, 455, 484, 488, 921 |
| TspGWI | ACGGA | 3 cut(s) | 170, 421, 661 |
| VpaK11BI | GGWCC | 1 cut(s) | 596 |
| XapI | RAATTY | 2 cut(s) | 281, 293 |
| XbaI | TCTAGA | 2 cut(s) | 137, 202 |
| XmnI | GAANNNNTTC | 1 cut(s) | 270 |
| XspI | CTAG | 2 cut(s) | 138, 203 |