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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 806 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 1 cut(s) | 658 |
| AclWI | GGATC | 2 cut(s) | 141, 518 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AcvI | CACGTG | 2 cut(s) | 749, 767 |
| AcyI | GRCGYC | 2 cut(s) | 190, 807 |
| AdeI | CACNNNGTG | 2 cut(s) | 752, 836 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 715, 768, 797, 820 |
| AflIII | ACRYGT | 3 cut(s) | 746, 764, 870 |
| AgsI | TTSAA | 4 cut(s) | 96, 307, 314, 343 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 410 |
| AjnI | CCWGG | 2 cut(s) | 117, 790 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 3 cut(s) | 371, 427, 551 |
| AluI | AGCT | 3 cut(s) | 371, 427, 551 |
| Alw21I | GWGCWC | 1 cut(s) | 841 |
| Alw44I | GTGCAC | 1 cut(s) | 837 |
| AlwI | GGATC | 2 cut(s) | 141, 518 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 1 cut(s) | 593 |
| ApaLI | GTGCAC | 1 cut(s) | 837 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspLEI | GCGC | 5 cut(s) | 259, 270, 330, 651, 809 |
| AspS9I | GGNCC | 1 cut(s) | 695 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 368, 518 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| AxyI | CCTNAGG | 1 cut(s) | 819 |
| BaeGI | GKGCMC | 1 cut(s) | 841 |
| BanI | GGYRCC | 2 cut(s) | 121, 806 |
| BauI | CACGAG | 2 cut(s) | 514, 572 |
| BbrPI | CACGTG | 2 cut(s) | 749, 767 |
| Bbv12I | GWGCWC | 1 cut(s) | 841 |
| BciT130I | CCWGG | 2 cut(s) | 119, 792 |
| BciVI | GTATCC | 1 cut(s) | 797 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 2 cut(s) | 260, 504 |
| BfmI | CTRYAG | 1 cut(s) | 380 |
| BfoI | RGCGCY | 3 cut(s) | 260, 271, 810 |
| BfuI | GTATCC | 1 cut(s) | 797 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 131, 792 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 1 cut(s) | 695 |
| BmiI | GGNNCC | 4 cut(s) | 123, 662, 696, 808 |
| BmrFI | CCNGG | 3 cut(s) | 119, 131, 792 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BoxI | GACNNNNGTC | 1 cut(s) | 873 |
| BpuEI | CTTGAG | 2 cut(s) | 153, 202 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 880 |
| BsaAI | YACGTR | 2 cut(s) | 749, 767 |
| BsaHI | GRCGYC | 2 cut(s) | 190, 807 |
| BsaJI | CCNNGG | 1 cut(s) | 790 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 763, 793 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 715, 768, 797, 820 |
| Bse21I | CCTNAGG | 1 cut(s) | 819 |
| Bse3DI | GCAATG | 3 cut(s) | 254, 283, 763 |
| BseBI | CCWGG | 2 cut(s) | 119, 792 |
| BseCI | ATCGAT | 1 cut(s) | 880 |
| BseDI | CCNNGG | 1 cut(s) | 790 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 715, 768, 797, 820 |
| BseMI | GCAATG | 3 cut(s) | 254, 283, 763 |
| BseMII | CTCAG | 3 cut(s) | 223, 543, 857 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 841 |
| BsgI | GTGCAG | 2 cut(s) | 472, 759 |
| BshFI | GGCC | 1 cut(s) | 595 |
| BshNI | GGYRCC | 2 cut(s) | 121, 806 |
| BshVI | ATCGAT | 1 cut(s) | 880 |
| BsiHKAI | GWGCWC | 1 cut(s) | 841 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 699 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 715, 768, 797, 820 |
| BsmFI | GGGAC | 1 cut(s) | 699 |
| BsnI | GGCC | 1 cut(s) | 595 |
| Bsp1286I | GDGCHC | 1 cut(s) | 841 |
| Bsp143I | GATC | 2 cut(s) | 133, 510 |
| BspACI | CCGC | 1 cut(s) | 658 |
| BspANI | GGCC | 1 cut(s) | 595 |
| BspCNI | CTCAG | 3 cut(s) | 222, 544, 856 |
| BspDI | ATCGAT | 1 cut(s) | 880 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 4 cut(s) | 123, 662, 696, 808 |
| BspPI | GGATC | 2 cut(s) | 141, 518 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 806 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 3 cut(s) | 254, 283, 763 |
| BssECI | CCNNGG | 1 cut(s) | 790 |
| BssMI | GATC | 2 cut(s) | 133, 510 |
| BssNI | GRCGYC | 2 cut(s) | 190, 807 |
| BssSI | CACGAG | 2 cut(s) | 514, 572 |
| Bst2BI | CACGAG | 2 cut(s) | 514, 572 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 792 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 384 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 2 cut(s) | 190, 807 |
| BstBAI | YACGTR | 2 cut(s) | 749, 767 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 5 cut(s) | 209, 552, 666, 819, 843 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstH2I | RGCGCY | 3 cut(s) | 260, 271, 810 |
| BstHHI | GCGC | 5 cut(s) | 259, 270, 330, 651, 809 |
| BstKTI | GATC | 2 cut(s) | 136, 513 |
| BstMBI | GATC | 2 cut(s) | 133, 510 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| BstNI | CCWGG | 2 cut(s) | 119, 792 |
| BstNSI | RCATGY | 2 cut(s) | 167, 874 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 873 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 117, 129, 790 |
| BstSFI | CTRYAG | 1 cut(s) | 380 |
| BstSLI | GKGCMC | 1 cut(s) | 841 |
| Bsu15I | ATCGAT | 1 cut(s) | 880 |
| Bsu36I | CCTNAGG | 1 cut(s) | 819 |
| BsuI | GTATCC | 1 cut(s) | 797 |
| BsuRI | GGCC | 1 cut(s) | 595 |
| BsuTUI | ATCGAT | 1 cut(s) | 880 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 5 cut(s) | 259, 270, 330, 651, 809 |
| Cfr13I | GGNCC | 1 cut(s) | 695 |
| ClaI | ATCGAT | 1 cut(s) | 880 |
| CseI | GACGC | 1 cut(s) | 198 |
| CviAII | CATG | 6 cut(s) | 31, 145, 164, 560, 617, 871 |
| CviJI | RGCY | 6 cut(s) | 48, 371, 427, 464, 551, 595 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 371, 427, 464, 551, 595 |
| DdeI | CTNAG | 5 cut(s) | 209, 552, 666, 819, 843 |
| DinI | GGCGCC | 1 cut(s) | 808 |
| DpnI | GATC | 2 cut(s) | 135, 512 |
| DpnII | GATC | 2 cut(s) | 133, 510 |
| DraIII | CACNNNGTG | 2 cut(s) | 752, 836 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DriI | GACNNNNNGTC | 1 cut(s) | 410 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco147I | AGGCCT | 1 cut(s) | 595 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| Eco72I | CACGTG | 2 cut(s) | 749, 767 |
| Eco81I | CCTNAGG | 1 cut(s) | 819 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 790 |
| EgeI | GGCGCC | 1 cut(s) | 808 |
| EheI | GGCGCC | 1 cut(s) | 808 |
| FaeI | CATG | 6 cut(s) | 34, 148, 167, 563, 620, 874 |
| FaqI | GGGAC | 1 cut(s) | 699 |
| FatI | CATG | 6 cut(s) | 30, 144, 163, 559, 616, 870 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FokI | GGATG | 1 cut(s) | 248 |
| FspBI | CTAG | 2 cut(s) | 260, 504 |
| GlaI | GCGC | 5 cut(s) | 258, 269, 329, 650, 808 |
| HaeII | RGCGCY | 3 cut(s) | 260, 271, 810 |
| HaeIII | GGCC | 1 cut(s) | 595 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 5 cut(s) | 259, 270, 330, 651, 809 |
| Hin1I | GRCGYC | 2 cut(s) | 190, 807 |
| Hin1II | CATG | 6 cut(s) | 34, 148, 167, 563, 620, 874 |
| Hin6I | GCGC | 5 cut(s) | 257, 268, 328, 649, 807 |
| HinP1I | GCGC | 5 cut(s) | 257, 268, 328, 649, 807 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 2 cut(s) | 368, 518 |
| Hpy166II | GTNNAC | 2 cut(s) | 404, 839 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 212, 367 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 514, 574, 617 |
| Hpy8I | GTNNAC | 2 cut(s) | 404, 839 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 713 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 384 |
| HpyCH4IV | ACGT | 4 cut(s) | 688, 748, 766, 835 |
| HpyCH4V | TGCA | 6 cut(s) | 239, 489, 635, 729, 740, 839 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 552, 666, 819, 843 |
| HpySE526I | ACGT | 4 cut(s) | 688, 748, 766, 835 |
| Hsp92I | GRCGYC | 2 cut(s) | 190, 807 |
| Hsp92II | CATG | 6 cut(s) | 34, 148, 167, 563, 620, 874 |
| HspAI | GCGC | 5 cut(s) | 257, 268, 328, 649, 807 |
| KasI | GGCGCC | 1 cut(s) | 806 |
| Kzo9I | GATC | 2 cut(s) | 133, 510 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 655 |
| LpnPI | CCDG | 9 cut(s) | 28, 30, 104, 131, 144, 312, 423, 777, 804 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 2 cut(s) | 260, 504 |
| MaeII | ACGT | 4 cut(s) | 688, 748, 766, 835 |
| MaeIII | GTNAC | 2 cut(s) | 67, 412 |
| MalI | GATC | 2 cut(s) | 135, 512 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 2 cut(s) | 133, 510 |
| MboII | GAAGA | 2 cut(s) | 275, 365 |
| MhlI | GDGCHC | 1 cut(s) | 841 |
| MluCI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| Mly113I | GGCGCC | 1 cut(s) | 807 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 2 cut(s) | 590, 848 |
| MslI | CAYNNNNRTG | 2 cut(s) | 572, 882 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 3 cut(s) | 119, 131, 792 |
| MvaI | CCWGG | 2 cut(s) | 119, 792 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| NarI | GGCGCC | 1 cut(s) | 807 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 133, 510 |
| NlaIII | CATG | 6 cut(s) | 34, 148, 167, 563, 620, 874 |
| NlaIV | GGNNCC | 4 cut(s) | 123, 662, 696, 808 |
| NmuCI | GTSAC | 1 cut(s) | 412 |
| NspI | RCATGY | 2 cut(s) | 167, 874 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PceI | AGGCCT | 1 cut(s) | 595 |
| PciI | ACATGT | 1 cut(s) | 870 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 832 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PluTI | GGCGCC | 1 cut(s) | 810 |
| PmaCI | CACGTG | 2 cut(s) | 749, 767 |
| PmlI | CACGTG | 2 cut(s) | 749, 767 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 749, 767 |
| PscI | ACATGT | 1 cut(s) | 870 |
| PshAI | GACNNNNGTC | 1 cut(s) | 873 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp6I | CCWGG | 2 cut(s) | 117, 790 |
| PspCI | CACGTG | 2 cut(s) | 749, 767 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 117, 790 |
| PspN4I | GGNNCC | 4 cut(s) | 123, 662, 696, 808 |
| PspPI | GGNCC | 1 cut(s) | 695 |
| RseI | CAYNNNNRTG | 2 cut(s) | 572, 882 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 2 cut(s) | 590, 848 |
| Sau3AI | GATC | 2 cut(s) | 133, 510 |
| Sau96I | GGNCC | 1 cut(s) | 695 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 3 cut(s) | 119, 131, 792 |
| SduI | GDGCHC | 1 cut(s) | 841 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfcI | CTRYAG | 1 cut(s) | 380 |
| SfoI | GGCGCC | 1 cut(s) | 808 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 572, 882 |
| SmlI | CTYRAG | 2 cut(s) | 168, 181 |
| SmoI | CTYRAG | 2 cut(s) | 168, 181 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| SseBI | AGGCCT | 1 cut(s) | 595 |
| SsiI | CCGC | 1 cut(s) | 658 |
| SspDI | GGCGCC | 1 cut(s) | 806 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 2 cut(s) | 260, 504 |
| StuI | AGGCCT | 1 cut(s) | 595 |
| StyD4I | CCNGG | 3 cut(s) | 117, 129, 790 |
| TaaI | ACNGT | 2 cut(s) | 62, 384 |
| TaiI | ACGT | 4 cut(s) | 691, 751, 769, 838 |
| TaqI | TCGA | 4 cut(s) | 5, 21, 227, 880 |
| TasI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 2 cut(s) | 590, 848 |
| Tru9I | TTAA | 2 cut(s) | 590, 848 |
| TscAI | CASTG | 1 cut(s) | 496 |
| TseFI | GTSAC | 1 cut(s) | 412 |
| Tsp45I | GTSAC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 4 cut(s) | 24, 133, 512, 605 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| TspRI | CASTG | 1 cut(s) | 496 |
| VneI | GTGCAC | 1 cut(s) | 837 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| XceI | RCATGY | 2 cut(s) | 167, 874 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 2 cut(s) | 260, 504 |