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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 929 |
| AciI | CCGC | 2 cut(s) | 292, 852 |
| AclWI | GGATC | 1 cut(s) | 552 |
| AcoI | YGGCCR | 1 cut(s) | 760 |
| AcsI | RAATTY | 1 cut(s) | 359 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 611, 878 |
| AflIII | ACRYGT | 1 cut(s) | 710 |
| AgsI | TTSAA | 3 cut(s) | 307, 811, 965 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 325 |
| AjiI | CACGTC | 1 cut(s) | 124 |
| AjnI | CCWGG | 3 cut(s) | 117, 871, 934 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 212, 244 |
| AluBI | AGCT | 4 cut(s) | 112, 143, 493, 503 |
| AluI | AGCT | 4 cut(s) | 112, 143, 493, 503 |
| Alw21I | GWGCWC | 1 cut(s) | 495 |
| Alw26I | GTCTC | 1 cut(s) | 271 |
| AlwI | GGATC | 1 cut(s) | 552 |
| Ama87I | CYCGRG | 1 cut(s) | 107 |
| AoxI | GGCC | 4 cut(s) | 81, 760, 774, 986 |
| ApeKI | GCWGC | 2 cut(s) | 167, 868 |
| ApoI | RAATTY | 1 cut(s) | 359 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 336 |
| AspS9I | GGNCC | 1 cut(s) | 774 |
| AsuHPI | GGTGA | 5 cut(s) | 199, 686, 935, 943, 950 |
| AvaI | CYCGRG | 1 cut(s) | 107 |
| BalI | TGGCCA | 1 cut(s) | 762 |
| BanI | GGYRCC | 1 cut(s) | 929 |
| BanII | GRGCYC | 1 cut(s) | 495 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| Bbv12I | GWGCWC | 1 cut(s) | 495 |
| BbvI | GCAGC | 2 cut(s) | 179, 880 |
| BccI | CCATC | 7 cut(s) | 80, 203, 428, 801, 839, 920, 924 |
| BceAI | ACGGC | 1 cut(s) | 296 |
| BciT130I | CCWGG | 3 cut(s) | 119, 873, 936 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BcoDI | GTCTC | 1 cut(s) | 271 |
| BfaI | CTAG | 1 cut(s) | 269 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BisI | GCNGC | 2 cut(s) | 168, 869 |
| BlpI | GCTNAGC | 1 cut(s) | 113 |
| BlsI | GCNGC | 2 cut(s) | 169, 870 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 873, 936 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 325 |
| BmeT110I | CYCGRG | 1 cut(s) | 107 |
| BmgBI | CACGTC | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 1 cut(s) | 774 |
| BmiI | GGNNCC | 4 cut(s) | 617, 775, 850, 931 |
| BmrFI | CCNGG | 3 cut(s) | 119, 873, 936 |
| BmsI | GCATC | 4 cut(s) | 82, 166, 931, 969 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| Bpu10I | CCTNAGC | 1 cut(s) | 983 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 113 |
| BpuEI | CTTGAG | 2 cut(s) | 62, 129 |
| BsaAI | YACGTR | 1 cut(s) | 713 |
| BsaJI | CCNNGG | 4 cut(s) | 561, 872, 903, 934 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 611, 878 |
| Bse1I | ACTGG | 1 cut(s) | 37 |
| Bse3DI | GCAATG | 1 cut(s) | 393 |
| BseBI | CCWGG | 3 cut(s) | 119, 873, 936 |
| BseDI | CCNNGG | 4 cut(s) | 561, 872, 903, 934 |
| BseGI | GGATG | 3 cut(s) | 198, 226, 531 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 611, 878 |
| BseMI | GCAATG | 1 cut(s) | 393 |
| BseMII | CTCAG | 1 cut(s) | 997 |
| BseNI | ACTGG | 1 cut(s) | 37 |
| BseXI | GCAGC | 2 cut(s) | 179, 880 |
| BshFI | GGCC | 4 cut(s) | 83, 762, 776, 988 |
| BshNI | GGYRCC | 1 cut(s) | 929 |
| BsiHKAI | GWGCWC | 1 cut(s) | 495 |
| BsiHKCI | CYCGRG | 1 cut(s) | 107 |
| BslFI | GGGAC | 1 cut(s) | 872 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 611, 878 |
| BsmAI | GTCTC | 1 cut(s) | 271 |
| BsmBI | CGTCTC | 1 cut(s) | 271 |
| BsmFI | GGGAC | 1 cut(s) | 872 |
| BsnI | GGCC | 4 cut(s) | 83, 762, 776, 988 |
| BsoBI | CYCGRG | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 1 cut(s) | 495 |
| Bsp143I | GATC | 2 cut(s) | 375, 557 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 113 |
| Bsp19I | CCATGG | 1 cut(s) | 903 |
| BspACI | CCGC | 2 cut(s) | 292, 852 |
| BspANI | GGCC | 4 cut(s) | 83, 762, 776, 988 |
| BspCNI | CTCAG | 1 cut(s) | 996 |
| BspHI | TCATGA | 1 cut(s) | 487 |
| BspLI | GGNNCC | 4 cut(s) | 617, 775, 850, 931 |
| BspPI | GGATC | 1 cut(s) | 552 |
| BspT107I | GGYRCC | 1 cut(s) | 929 |
| BsrDI | GCAATG | 1 cut(s) | 393 |
| BsrI | ACTGG | 1 cut(s) | 37 |
| BssECI | CCNNGG | 4 cut(s) | 561, 872, 903, 934 |
| BssMI | GATC | 2 cut(s) | 375, 557 |
| BssT1I | CCWWGG | 1 cut(s) | 903 |
| Bst2UI | CCWGG | 3 cut(s) | 119, 873, 936 |
| Bst4CI | ACNGT | 2 cut(s) | 133, 886 |
| Bst6I | CTCTTC | 1 cut(s) | 715 |
| BstBAI | YACGTR | 1 cut(s) | 713 |
| BstC8I | GCNNGC | 3 cut(s) | 71, 141, 880 |
| BstDEI | CTNAG | 7 cut(s) | 113, 172, 441, 638, 786, 983, 1050 |
| BstDSI | CCRYGG | 2 cut(s) | 561, 903 |
| BstF5I | GGATG | 3 cut(s) | 198, 226, 531 |
| BstKTI | GATC | 2 cut(s) | 378, 560 |
| BstMAI | GTCTC | 1 cut(s) | 271 |
| BstMBI | GATC | 2 cut(s) | 375, 557 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 164, 176, 812 |
| BstNI | CCWGG | 3 cut(s) | 119, 873, 936 |
| BstSCI | CCNGG | 3 cut(s) | 117, 871, 934 |
| BstV1I | GCAGC | 2 cut(s) | 179, 880 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| BstX2I | RGATCY | 1 cut(s) | 557 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 770, 872 |
| BstYI | RGATCY | 1 cut(s) | 557 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 4 cut(s) | 83, 762, 776, 988 |
| BtgI | CCRYGG | 2 cut(s) | 561, 903 |
| BtrI | CACGTC | 1 cut(s) | 124 |
| BtsCI | GGATG | 3 cut(s) | 198, 226, 531 |
| Cac8I | GCNNGC | 3 cut(s) | 71, 141, 880 |
| CciI | TCATGA | 1 cut(s) | 487 |
| Cfr13I | GGNCC | 1 cut(s) | 774 |
| CseI | GACGC | 2 cut(s) | 812, 901 |
| CviAII | CATG | 5 cut(s) | 488, 764, 896, 904, 920 |
| DdeI | CTNAG | 7 cut(s) | 113, 172, 441, 638, 786, 983, 1050 |
| DpnI | GATC | 2 cut(s) | 377, 559 |
| DpnII | GATC | 2 cut(s) | 375, 557 |
| DriI | GACNNNNNGTC | 1 cut(s) | 325 |
| EaeI | YGGCCR | 1 cut(s) | 760 |
| Eam1104I | CTCTTC | 1 cut(s) | 715 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 325 |
| EarI | CTCTTC | 1 cut(s) | 715 |
| EciI | GGCGGA | 1 cut(s) | 841 |
| Ecl136II | GAGCTC | 1 cut(s) | 493 |
| Eco130I | CCWWGG | 1 cut(s) | 903 |
| Eco147I | AGGCCT | 1 cut(s) | 988 |
| Eco24I | GRGCYC | 1 cut(s) | 495 |
| Eco32I | GATATC | 1 cut(s) | 64 |
| Eco53kI | GAGCTC | 1 cut(s) | 493 |
| Eco88I | CYCGRG | 1 cut(s) | 107 |
| EcoICRI | GAGCTC | 1 cut(s) | 493 |
| EcoRI | GAATTC | 1 cut(s) | 359 |
| EcoRII | CCWGG | 3 cut(s) | 117, 871, 934 |
| EcoRV | GATATC | 1 cut(s) | 64 |
| EcoT14I | CCWWGG | 1 cut(s) | 903 |
| EcoT38I | GRGCYC | 1 cut(s) | 495 |
| ErhI | CCWWGG | 1 cut(s) | 903 |
| Esp3I | CGTCTC | 1 cut(s) | 271 |
| FaeI | CATG | 5 cut(s) | 491, 767, 899, 907, 923 |
| FaqI | GGGAC | 1 cut(s) | 872 |
| FatI | CATG | 5 cut(s) | 487, 763, 895, 903, 919 |
| FauNDI | CATATG | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 2 cut(s) | 168, 869 |
| FokI | GGATG | 3 cut(s) | 185, 233, 518 |
| FriOI | GRGCYC | 1 cut(s) | 495 |
| Fsp4HI | GCNGC | 2 cut(s) | 168, 869 |
| FspBI | CTAG | 1 cut(s) | 269 |
| GluI | GCNGC | 2 cut(s) | 168, 869 |
| HaeIII | GGCC | 4 cut(s) | 83, 762, 776, 988 |
| HgaI | GACGC | 2 cut(s) | 812, 901 |
| Hin1II | CATG | 5 cut(s) | 491, 767, 899, 907, 923 |
| HinfI | GANTC | 7 cut(s) | 90, 103, 224, 251, 403, 474, 584 |
| HphI | GGTGA | 5 cut(s) | 199, 686, 935, 943, 950 |
| Hpy166II | GTNNAC | 2 cut(s) | 728, 862 |
| Hpy188I | TCNGA | 2 cut(s) | 331, 978 |
| Hpy188III | TCNNGA | 7 cut(s) | 59, 107, 263, 317, 488, 555, 581 |
| Hpy8I | GTNNAC | 2 cut(s) | 728, 862 |
| HpyAV | CCTTC | 1 cut(s) | 680 |
| HpyCH4III | ACNGT | 2 cut(s) | 133, 886 |
| HpyCH4IV | ACGT | 5 cut(s) | 123, 243, 655, 712, 730 |
| HpyCH4V | TGCA | 4 cut(s) | 179, 386, 428, 467 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 164, 176, 812 |
| HpyF3I | CTNAG | 7 cut(s) | 113, 172, 441, 638, 786, 983, 1050 |
| HpySE526I | ACGT | 5 cut(s) | 123, 243, 655, 712, 730 |
| Hsp92II | CATG | 5 cut(s) | 491, 767, 899, 907, 923 |
| Kzo9I | GATC | 2 cut(s) | 375, 557 |
| LmnI | GCTCC | 3 cut(s) | 500, 615, 854 |
| Lsp1109I | GCAGC | 2 cut(s) | 179, 880 |
| LweI | GCATC | 4 cut(s) | 82, 166, 931, 969 |
| MaeI | CTAG | 1 cut(s) | 269 |
| MaeII | ACGT | 5 cut(s) | 123, 243, 655, 712, 730 |
| MaeIII | GTNAC | 6 cut(s) | 5, 248, 460, 596, 713, 1008 |
| MalI | GATC | 2 cut(s) | 377, 559 |
| MboI | GATC | 2 cut(s) | 375, 557 |
| MboII | GAAGA | 3 cut(s) | 412, 553, 732 |
| MflI | RGATCY | 1 cut(s) | 557 |
| MhlI | GDGCHC | 1 cut(s) | 495 |
| MlsI | TGGCCA | 1 cut(s) | 762 |
| MluCI | AATT | 6 cut(s) | 17, 233, 359, 453, 550, 589 |
| MluNI | TGGCCA | 1 cut(s) | 762 |
| MlyI | GAGTC | 2 cut(s) | 245, 397 |
| MmeI | TCCRAC | 1 cut(s) | 309 |
| MnlI | CCTC | 9 cut(s) | 299, 605, 716, 736, 740, 766, 828, 865, 1032 |
| Mox20I | TGGCCA | 1 cut(s) | 762 |
| MroXI | GAANNNNTTC | 1 cut(s) | 336 |
| MscI | TGGCCA | 1 cut(s) | 762 |
| MseI | TTAA | 2 cut(s) | 345, 353 |
| MslI | CAYNNNNRTG | 7 cut(s) | 203, 219, 536, 768, 798, 921, 924 |
| Msp20I | TGGCCA | 1 cut(s) | 762 |
| MspR9I | CCNGG | 3 cut(s) | 119, 873, 936 |
| MvaI | CCWGG | 3 cut(s) | 119, 873, 936 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 164, 176, 812 |
| NcoI | CCATGG | 1 cut(s) | 903 |
| NdeI | CATATG | 1 cut(s) | 216 |
| NdeII | GATC | 2 cut(s) | 375, 557 |
| NlaIII | CATG | 5 cut(s) | 491, 767, 899, 907, 923 |
| NlaIV | GGNNCC | 4 cut(s) | 617, 775, 850, 931 |
| NmuCI | GTSAC | 2 cut(s) | 248, 596 |
| PaeR7I | CTCGAG | 1 cut(s) | 107 |
| PagI | TCATGA | 1 cut(s) | 487 |
| PceI | AGGCCT | 1 cut(s) | 988 |
| PdmI | GAANNNNTTC | 1 cut(s) | 336 |
| PfeI | GAWTC | 5 cut(s) | 90, 103, 224, 474, 584 |
| PkrI | GCNGC | 2 cut(s) | 169, 870 |
| PleI | GAGTC | 2 cut(s) | 245, 397 |
| PpsI | GAGTC | 2 cut(s) | 245, 397 |
| Ppu21I | YACGTR | 1 cut(s) | 713 |
| Psp124BI | GAGCTC | 1 cut(s) | 495 |
| Psp6I | CCWGG | 3 cut(s) | 117, 871, 934 |
| PspGI | CCWGG | 3 cut(s) | 117, 871, 934 |
| PspN4I | GGNNCC | 4 cut(s) | 617, 775, 850, 931 |
| PspPI | GGNCC | 1 cut(s) | 774 |
| PsuI | RGATCY | 1 cut(s) | 557 |
| RseI | CAYNNNNRTG | 7 cut(s) | 203, 219, 536, 768, 798, 921, 924 |
| SacI | GAGCTC | 1 cut(s) | 495 |
| SaqAI | TTAA | 2 cut(s) | 345, 353 |
| SatI | GCNGC | 2 cut(s) | 168, 869 |
| Sau3AI | GATC | 2 cut(s) | 375, 557 |
| Sau96I | GGNCC | 1 cut(s) | 774 |
| SchI | GAGTC | 2 cut(s) | 245, 397 |
| ScrFI | CCNGG | 3 cut(s) | 119, 873, 936 |
| SduI | GDGCHC | 1 cut(s) | 495 |
| SfaNI | GCATC | 4 cut(s) | 82, 166, 931, 969 |
| Sfr274I | CTCGAG | 1 cut(s) | 107 |
| SlaI | CTCGAG | 1 cut(s) | 107 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 203, 219, 536, 768, 798, 921, 924 |
| SmlI | CTYRAG | 3 cut(s) | 77, 107, 144 |
| SmoI | CTYRAG | 3 cut(s) | 77, 107, 144 |
| Sse9I | AATT | 6 cut(s) | 17, 233, 359, 453, 550, 589 |
| SseBI | AGGCCT | 1 cut(s) | 988 |
| SsiI | CCGC | 2 cut(s) | 292, 852 |
| SspMI | CTAG | 1 cut(s) | 269 |
| SstI | GAGCTC | 1 cut(s) | 495 |
| StuI | AGGCCT | 1 cut(s) | 988 |
| StyD4I | CCNGG | 3 cut(s) | 117, 871, 934 |
| StyI | CCWWGG | 1 cut(s) | 903 |
| TaaI | ACNGT | 2 cut(s) | 133, 886 |
| TaiI | ACGT | 5 cut(s) | 126, 246, 658, 715, 733 |
| TaqI | TCGA | 3 cut(s) | 108, 451, 554 |
| TasI | AATT | 6 cut(s) | 17, 233, 359, 453, 550, 589 |
| TfiI | GAWTC | 5 cut(s) | 90, 103, 224, 474, 584 |
| Tru1I | TTAA | 2 cut(s) | 345, 353 |
| Tru9I | TTAA | 2 cut(s) | 345, 353 |
| TseFI | GTSAC | 2 cut(s) | 248, 596 |
| TseI | GCWGC | 2 cut(s) | 167, 868 |
| Tsp45I | GTSAC | 2 cut(s) | 248, 596 |
| TspDTI | ATGAA | 2 cut(s) | 476, 654 |
| TspGWI | ACGGA | 3 cut(s) | 236, 550, 847 |
| XapI | RAATTY | 1 cut(s) | 359 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 202, 869, 923 |
| XhoI | CTCGAG | 1 cut(s) | 107 |
| XmnI | GAANNNNTTC | 1 cut(s) | 336 |
| XspI | CTAG | 1 cut(s) | 269 |