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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 396, 441 |
| AccB1I | GGYRCC | 3 cut(s) | 58, 617, 638 |
| AciI | CCGC | 2 cut(s) | 538, 662 |
| AclWI | GGATC | 1 cut(s) | 78 |
| AcvI | CACGTG | 2 cut(s) | 560, 578 |
| AcyI | GRCGYC | 2 cut(s) | 127, 618 |
| AdeI | CACNNNGTG | 2 cut(s) | 563, 677 |
| AfeI | AGCGCT | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 455, 456, 482, 526, 579, 652 |
| AflIII | ACRYGT | 2 cut(s) | 557, 575 |
| AgsI | TTSAA | 4 cut(s) | 244, 251, 280, 402 |
| AjnI | CCWGG | 2 cut(s) | 54, 525 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 192, 224 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 62, 94 |
| AluBI | AGCT | 1 cut(s) | 184 |
| AluI | AGCT | 1 cut(s) | 184 |
| Alw21I | GWGCWC | 1 cut(s) | 682 |
| Alw44I | GTGCAC | 1 cut(s) | 678 |
| AlwI | GGATC | 1 cut(s) | 78 |
| Aor51HI | AGCGCT | 1 cut(s) | 195 |
| AoxI | GGCC | 2 cut(s) | 404, 505 |
| ApaI | GGGCCC | 1 cut(s) | 509 |
| ApaLI | GTGCAC | 1 cut(s) | 678 |
| AspA2I | CCTAGG | 1 cut(s) | 650 |
| AspLEI | GCGC | 4 cut(s) | 196, 267, 462, 620 |
| AspS9I | GGNCC | 3 cut(s) | 405, 505, 506 |
| AsuC2I | CCSGG | 1 cut(s) | 68 |
| AvrII | CCTAGG | 1 cut(s) | 650 |
| BaeGI | GKGCMC | 2 cut(s) | 509, 682 |
| BanI | GGYRCC | 3 cut(s) | 58, 617, 638 |
| BanII | GRGCYC | 1 cut(s) | 509 |
| BauI | CACGAG | 1 cut(s) | 383 |
| BbrPI | CACGTG | 2 cut(s) | 560, 578 |
| Bbv12I | GWGCWC | 1 cut(s) | 682 |
| BceAI | ACGGC | 1 cut(s) | 591 |
| BciT130I | CCWGG | 2 cut(s) | 56, 527 |
| BciVI | GTATCC | 2 cut(s) | 547, 608 |
| BcnI | CCSGG | 1 cut(s) | 68 |
| BfaI | CTAG | 3 cut(s) | 197, 603, 651 |
| BfoI | RGCGCY | 2 cut(s) | 197, 621 |
| BfuI | GTATCC | 2 cut(s) | 547, 608 |
| BlnI | CCTAGG | 1 cut(s) | 650 |
| Bme1390I | CCNGG | 3 cut(s) | 56, 68, 527 |
| BmgT120I | GGNCC | 3 cut(s) | 405, 505, 506 |
| BmiI | GGNNCC | 4 cut(s) | 60, 507, 619, 640 |
| BmrFI | CCNGG | 3 cut(s) | 56, 68, 527 |
| BmsI | GCATC | 2 cut(s) | 111, 163 |
| BpuEI | CTTGAG | 1 cut(s) | 90 |
| BpuMI | CCSGG | 1 cut(s) | 68 |
| BsaAI | YACGTR | 2 cut(s) | 560, 578 |
| BsaHI | GRCGYC | 2 cut(s) | 127, 618 |
| BsaJI | CCNNGG | 2 cut(s) | 621, 650 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 146, 176, 631, 661 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 455, 456, 482, 526, 579, 652 |
| Bse3DI | GCAATG | 1 cut(s) | 220 |
| BseBI | CCWGG | 2 cut(s) | 56, 527 |
| BseDI | CCNNGG | 2 cut(s) | 621, 650 |
| BseGI | GGATG | 2 cut(s) | 178, 658 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 455, 456, 482, 526, 579, 652 |
| BseMI | GCAATG | 1 cut(s) | 220 |
| BseMII | CTCAG | 2 cut(s) | 160, 354 |
| BseSI | GKGCMC | 2 cut(s) | 509, 682 |
| BshFI | GGCC | 2 cut(s) | 406, 507 |
| BshNI | GGYRCC | 3 cut(s) | 58, 617, 638 |
| BsiHKAI | GWGCWC | 1 cut(s) | 682 |
| BsiSI | CCGG | 1 cut(s) | 68 |
| BslFI | GGGAC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 455, 456, 482, 526, 579, 652 |
| BsmFI | GGGAC | 1 cut(s) | 510 |
| BsmI | GAATGC | 1 cut(s) | 423 |
| BsnI | GGCC | 2 cut(s) | 406, 507 |
| Bsp120I | GGGCCC | 1 cut(s) | 505 |
| Bsp1286I | GDGCHC | 2 cut(s) | 509, 682 |
| Bsp143I | GATC | 2 cut(s) | 70, 165 |
| Bsp19I | CCATGG | 1 cut(s) | 621 |
| BspACI | CCGC | 2 cut(s) | 538, 662 |
| BspANI | GGCC | 2 cut(s) | 406, 507 |
| BspCNI | CTCAG | 2 cut(s) | 159, 355 |
| BspHI | TCATGA | 1 cut(s) | 427 |
| BspLI | GGNNCC | 4 cut(s) | 60, 507, 619, 640 |
| BspPI | GGATC | 1 cut(s) | 78 |
| BspQI | GCTCTTC | 2 cut(s) | 195, 315 |
| BspT107I | GGYRCC | 3 cut(s) | 58, 617, 638 |
| BsrDI | GCAATG | 1 cut(s) | 220 |
| BssECI | CCNNGG | 2 cut(s) | 621, 650 |
| BssMI | GATC | 2 cut(s) | 70, 165 |
| BssNI | GRCGYC | 2 cut(s) | 127, 618 |
| BssSI | CACGAG | 1 cut(s) | 383 |
| BssT1I | CCWWGG | 2 cut(s) | 621, 650 |
| Bst2BI | CACGAG | 1 cut(s) | 383 |
| Bst2UI | CCWGG | 2 cut(s) | 56, 527 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 315 |
| BstACI | GRCGYC | 2 cut(s) | 127, 618 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 677 |
| BstBAI | YACGTR | 2 cut(s) | 560, 578 |
| BstC8I | GCNNGC | 1 cut(s) | 102 |
| BstDEI | CTNAG | 4 cut(s) | 146, 363, 417, 477 |
| BstDSI | CCRYGG | 1 cut(s) | 621 |
| BstF5I | GGATG | 2 cut(s) | 178, 658 |
| BstH2I | RGCGCY | 2 cut(s) | 197, 621 |
| BstHHI | GCGC | 4 cut(s) | 196, 267, 462, 620 |
| BstKTI | GATC | 2 cut(s) | 73, 168 |
| BstMBI | GATC | 2 cut(s) | 70, 165 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 202, 466, 677 |
| BstNI | CCWGG | 2 cut(s) | 56, 527 |
| BstNSI | RCATGY | 2 cut(s) | 104, 671 |
| BstSCI | CCNGG | 3 cut(s) | 54, 66, 525 |
| BstSLI | GKGCMC | 2 cut(s) | 509, 682 |
| BstX2I | RGATCY | 1 cut(s) | 70 |
| BstYI | RGATCY | 1 cut(s) | 70 |
| BsuI | GTATCC | 2 cut(s) | 547, 608 |
| BsuRI | GGCC | 2 cut(s) | 406, 507 |
| BtgI | CCRYGG | 1 cut(s) | 621 |
| BtsCI | GGATG | 2 cut(s) | 178, 658 |
| Cac8I | GCNNGC | 1 cut(s) | 102 |
| CciI | TCATGA | 1 cut(s) | 427 |
| CfoI | GCGC | 4 cut(s) | 196, 267, 462, 620 |
| Cfr13I | GGNCC | 3 cut(s) | 405, 505, 506 |
| CseI | GACGC | 1 cut(s) | 135 |
| CviAII | CATG | 7 cut(s) | 101, 325, 371, 428, 491, 622, 668 |
| CviJI | RGCY | 5 cut(s) | 184, 308, 406, 507, 606 |
| CviKI_1 | RGCY | 5 cut(s) | 184, 308, 406, 507, 606 |
| DdeI | CTNAG | 4 cut(s) | 146, 363, 417, 477 |
| DinI | GGCGCC | 1 cut(s) | 619 |
| DpnI | GATC | 2 cut(s) | 72, 167 |
| DpnII | GATC | 2 cut(s) | 70, 165 |
| DraIII | CACNNNGTG | 2 cut(s) | 563, 677 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 315 |
| EarI | CTCTTC | 2 cut(s) | 195, 315 |
| Eco130I | CCWWGG | 2 cut(s) | 621, 650 |
| Eco24I | GRGCYC | 1 cut(s) | 509 |
| Eco47III | AGCGCT | 1 cut(s) | 195 |
| Eco72I | CACGTG | 2 cut(s) | 560, 578 |
| EcoRII | CCWGG | 2 cut(s) | 54, 525 |
| EcoT14I | CCWWGG | 2 cut(s) | 621, 650 |
| EcoT38I | GRGCYC | 1 cut(s) | 509 |
| EgeI | GGCGCC | 1 cut(s) | 619 |
| EheI | GGCGCC | 1 cut(s) | 619 |
| ErhI | CCWWGG | 2 cut(s) | 621, 650 |
| FaeI | CATG | 7 cut(s) | 104, 328, 374, 431, 494, 625, 671 |
| FaqI | GGGAC | 1 cut(s) | 510 |
| FatI | CATG | 7 cut(s) | 100, 324, 370, 427, 490, 621, 667 |
| FauNDI | CATATG | 1 cut(s) | 132 |
| FokI | GGATG | 2 cut(s) | 185, 645 |
| FriOI | GRGCYC | 1 cut(s) | 509 |
| FspBI | CTAG | 3 cut(s) | 197, 603, 651 |
| GlaI | GCGC | 4 cut(s) | 195, 266, 461, 619 |
| HaeII | RGCGCY | 2 cut(s) | 197, 621 |
| HaeIII | GGCC | 2 cut(s) | 406, 507 |
| HapII | CCGG | 1 cut(s) | 68 |
| HgaI | GACGC | 1 cut(s) | 135 |
| HhaI | GCGC | 4 cut(s) | 196, 267, 462, 620 |
| Hin1I | GRCGYC | 2 cut(s) | 127, 618 |
| Hin1II | CATG | 7 cut(s) | 104, 328, 374, 431, 494, 625, 671 |
| Hin6I | GCGC | 4 cut(s) | 194, 265, 460, 618 |
| HinP1I | GCGC | 4 cut(s) | 194, 265, 460, 618 |
| HinfI | GANTC | 1 cut(s) | 224 |
| HpaII | CCGG | 1 cut(s) | 68 |
| Hpy166II | GTNNAC | 1 cut(s) | 680 |
| Hpy188I | TCNGA | 2 cut(s) | 10, 149 |
| Hpy188III | TCNNGA | 3 cut(s) | 118, 385, 428 |
| Hpy8I | GTNNAC | 1 cut(s) | 680 |
| Hpy99I | CGWCG | 1 cut(s) | 129 |
| HpyAV | CCTTC | 2 cut(s) | 238, 524 |
| HpyCH4IV | ACGT | 4 cut(s) | 499, 559, 577, 676 |
| HpyCH4V | TGCA | 5 cut(s) | 143, 176, 446, 671, 680 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 202, 466, 677 |
| HpyF3I | CTNAG | 4 cut(s) | 146, 363, 417, 477 |
| HpySE526I | ACGT | 4 cut(s) | 499, 559, 577, 676 |
| Hsp92I | GRCGYC | 2 cut(s) | 127, 618 |
| Hsp92II | CATG | 7 cut(s) | 104, 328, 374, 431, 494, 625, 671 |
| HspAI | GCGC | 4 cut(s) | 194, 265, 460, 618 |
| KasI | GGCGCC | 1 cut(s) | 617 |
| Kzo9I | GATC | 2 cut(s) | 70, 165 |
| LguI | GCTCTTC | 2 cut(s) | 195, 315 |
| LmnI | GCTCC | 1 cut(s) | 466 |
| LpnPI | CCDG | 7 cut(s) | 41, 68, 81, 249, 359, 512, 539 |
| LweI | GCATC | 2 cut(s) | 111, 163 |
| MaeI | CTAG | 3 cut(s) | 197, 603, 651 |
| MaeII | ACGT | 4 cut(s) | 499, 559, 577, 676 |
| MaeIII | GTNAC | 1 cut(s) | 348 |
| MalI | GATC | 2 cut(s) | 72, 167 |
| MboI | GATC | 2 cut(s) | 70, 165 |
| MboII | GAAGA | 2 cut(s) | 212, 302 |
| MflI | RGATCY | 1 cut(s) | 70 |
| MhlI | GDGCHC | 2 cut(s) | 509, 682 |
| MluCI | AATT | 5 cut(s) | 298, 391, 397, 436, 686 |
| Mly113I | GGCGCC | 1 cut(s) | 618 |
| MseI | TTAA | 1 cut(s) | 689 |
| MslI | CAYNNNNRTG | 1 cut(s) | 708 |
| MspI | CCGG | 1 cut(s) | 68 |
| MspR9I | CCNGG | 3 cut(s) | 56, 68, 527 |
| Mva1269I | GAATGC | 1 cut(s) | 423 |
| MvaI | CCWGG | 2 cut(s) | 56, 527 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 202, 466, 677 |
| NarI | GGCGCC | 1 cut(s) | 618 |
| NciI | CCSGG | 1 cut(s) | 68 |
| NcoI | CCATGG | 1 cut(s) | 621 |
| NdeI | CATATG | 1 cut(s) | 132 |
| NdeII | GATC | 2 cut(s) | 70, 165 |
| NlaIII | CATG | 7 cut(s) | 104, 328, 374, 431, 494, 625, 671 |
| NlaIV | GGNNCC | 4 cut(s) | 60, 507, 619, 640 |
| NmuCI | GTSAC | 1 cut(s) | 348 |
| NspI | RCATGY | 2 cut(s) | 104, 671 |
| PaeI | GCATGC | 1 cut(s) | 104 |
| PagI | TCATGA | 1 cut(s) | 427 |
| PciSI | GCTCTTC | 2 cut(s) | 195, 315 |
| PctI | GAATGC | 1 cut(s) | 423 |
| PfeI | GAWTC | 1 cut(s) | 224 |
| PluTI | GGCGCC | 1 cut(s) | 621 |
| PmaCI | CACGTG | 2 cut(s) | 560, 578 |
| PmlI | CACGTG | 2 cut(s) | 560, 578 |
| Ppu21I | YACGTR | 2 cut(s) | 560, 578 |
| PsiI | TTATAA | 2 cut(s) | 396, 441 |
| Psp6I | CCWGG | 2 cut(s) | 54, 525 |
| PspCI | CACGTG | 2 cut(s) | 560, 578 |
| PspGI | CCWGG | 2 cut(s) | 54, 525 |
| PspN4I | GGNNCC | 4 cut(s) | 60, 507, 619, 640 |
| PspOMI | GGGCCC | 1 cut(s) | 505 |
| PspPI | GGNCC | 3 cut(s) | 405, 505, 506 |
| PsuI | RGATCY | 1 cut(s) | 70 |
| RseI | CAYNNNNRTG | 1 cut(s) | 708 |
| SapI | GCTCTTC | 2 cut(s) | 195, 315 |
| SaqAI | TTAA | 1 cut(s) | 689 |
| Sau3AI | GATC | 2 cut(s) | 70, 165 |
| Sau96I | GGNCC | 3 cut(s) | 405, 505, 506 |
| ScrFI | CCNGG | 3 cut(s) | 56, 68, 527 |
| SduI | GDGCHC | 2 cut(s) | 509, 682 |
| SfaNI | GCATC | 2 cut(s) | 111, 163 |
| SfoI | GGCGCC | 1 cut(s) | 619 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 708 |
| SmlI | CTYRAG | 1 cut(s) | 105 |
| SmoI | CTYRAG | 1 cut(s) | 105 |
| SphI | GCATGC | 1 cut(s) | 104 |
| Sse9I | AATT | 5 cut(s) | 298, 391, 397, 436, 686 |
| SsiI | CCGC | 2 cut(s) | 538, 662 |
| SspDI | GGCGCC | 1 cut(s) | 617 |
| SspI | AATATT | 1 cut(s) | 42 |
| SspMI | CTAG | 3 cut(s) | 197, 603, 651 |
| StyD4I | CCNGG | 3 cut(s) | 54, 66, 525 |
| StyI | CCWWGG | 2 cut(s) | 621, 650 |
| TaiI | ACGT | 4 cut(s) | 502, 562, 580, 679 |
| TaqI | TCGA | 1 cut(s) | 164 |
| TasI | AATT | 5 cut(s) | 298, 391, 397, 436, 686 |
| TfiI | GAWTC | 1 cut(s) | 224 |
| Tru1I | TTAA | 1 cut(s) | 689 |
| Tru9I | TTAA | 1 cut(s) | 689 |
| TseFI | GTSAC | 1 cut(s) | 348 |
| Tsp45I | GTSAC | 1 cut(s) | 348 |
| TspDTI | ATGAA | 1 cut(s) | 416 |
| VneI | GTGCAC | 1 cut(s) | 678 |
| XceI | RCATGY | 2 cut(s) | 104, 671 |
| XmaJI | CCTAGG | 1 cut(s) | 650 |
| XspI | CTAG | 3 cut(s) | 197, 603, 651 |