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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 582 |
| AccB1I | GGYRCC | 1 cut(s) | 422 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 890 |
| AccII | CGCG | 2 cut(s) | 218, 672 |
| AciI | CCGC | 1 cut(s) | 672 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AclWI | GGATC | 1 cut(s) | 882 |
| AcyI | GRCGYC | 2 cut(s) | 423, 696 |
| AfaI | GTAC | 2 cut(s) | 523, 729 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 241, 533, 604, 890 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 652 |
| AgsI | TTSAA | 6 cut(s) | 22, 149, 167, 269, 363, 463 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 7 cut(s) | 155, 179, 185, 259, 415, 437, 754 |
| AluI | AGCT | 7 cut(s) | 155, 179, 185, 259, 415, 437, 754 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 634 |
| Alw26I | GTCTC | 2 cut(s) | 32, 661 |
| Alw44I | GTGCAC | 1 cut(s) | 630 |
| AlwI | GGATC | 1 cut(s) | 882 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 890 |
| ApaLI | GTGCAC | 1 cut(s) | 630 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| AspLEI | GCGC | 4 cut(s) | 50, 81, 220, 425 |
| AspS9I | GGNCC | 1 cut(s) | 584 |
| AsuHPI | GGTGA | 2 cut(s) | 587, 704 |
| AvaII | GGWCC | 1 cut(s) | 584 |
| BaeGI | GKGCMC | 1 cut(s) | 634 |
| BanI | GGYRCC | 1 cut(s) | 422 |
| BbsI | GAAGAC | 4 cut(s) | 252, 329, 707, 870 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 634 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 1 cut(s) | 122 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 661 |
| BfaI | CTAG | 2 cut(s) | 35, 477 |
| BfmI | CTRYAG | 1 cut(s) | 514 |
| BfoI | RGCGCY | 1 cut(s) | 426 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme18I | GGWCC | 1 cut(s) | 584 |
| BmgT120I | GGNCC | 1 cut(s) | 584 |
| BmiI | GGNNCC | 3 cut(s) | 424, 638, 676 |
| BmsI | GCATC | 1 cut(s) | 746 |
| BpiI | GAAGAC | 4 cut(s) | 252, 329, 707, 870 |
| BpuEI | CTTGAG | 1 cut(s) | 159 |
| BsaBI | GATNNNNATC | 3 cut(s) | 314, 843, 849 |
| BsaHI | GRCGYC | 2 cut(s) | 423, 696 |
| BsaJI | CCNNGG | 3 cut(s) | 483, 528, 640 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 241, 533, 604, 890 |
| Bse1I | ACTGG | 2 cut(s) | 49, 895 |
| Bse8I | GATNNNNATC | 3 cut(s) | 314, 843, 849 |
| BseDI | CCNNGG | 3 cut(s) | 483, 528, 640 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 3 cut(s) | 314, 843, 849 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 241, 533, 604, 890 |
| BseNI | ACTGG | 2 cut(s) | 49, 895 |
| BseSI | GKGCMC | 1 cut(s) | 634 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 2 cut(s) | 218, 672 |
| BshNI | GGYRCC | 1 cut(s) | 422 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 634 |
| BsiSI | CCGG | 1 cut(s) | 681 |
| BslFI | GGGAC | 1 cut(s) | 578 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 241, 533, 604, 890 |
| BsmAI | GTCTC | 2 cut(s) | 32, 661 |
| BsmBI | CGTCTC | 1 cut(s) | 661 |
| BsmFI | GGGAC | 1 cut(s) | 578 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 634 |
| Bsp143I | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| BspACI | CCGC | 1 cut(s) | 672 |
| BspFNI | CGCG | 2 cut(s) | 218, 672 |
| BspHI | TCATGA | 2 cut(s) | 195, 409 |
| BspLI | GGNNCC | 3 cut(s) | 424, 638, 676 |
| BspPI | GGATC | 1 cut(s) | 882 |
| BspT107I | GGYRCC | 1 cut(s) | 422 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 2 cut(s) | 49, 895 |
| BssECI | CCNNGG | 3 cut(s) | 483, 528, 640 |
| BssMI | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| BssNI | GRCGYC | 2 cut(s) | 423, 696 |
| BssT1I | CCWWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 1 cut(s) | 641 |
| Bst6I | CTCTTC | 1 cut(s) | 653 |
| BstACI | GRCGYC | 2 cut(s) | 423, 696 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 630 |
| BstDEI | CTNAG | 3 cut(s) | 492, 555, 854 |
| BstDSI | CCRYGG | 2 cut(s) | 483, 640 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 2 cut(s) | 218, 672 |
| BstH2I | RGCGCY | 1 cut(s) | 426 |
| BstHHI | GCGC | 4 cut(s) | 50, 81, 220, 425 |
| BstKTI | GATC | 5 cut(s) | 318, 835, 847, 853, 877 |
| BstMAI | GTCTC | 2 cut(s) | 32, 661 |
| BstMBI | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 809 |
| BstSFI | CTRYAG | 1 cut(s) | 514 |
| BstSLI | GKGCMC | 1 cut(s) | 634 |
| BstUI | CGCG | 2 cut(s) | 218, 672 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 4 cut(s) | 252, 329, 707, 870 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 2 cut(s) | 483, 640 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 1 cut(s) | 630 |
| CaiI | CAGNNNCTG | 1 cut(s) | 890 |
| CciI | TCATGA | 2 cut(s) | 195, 409 |
| CfoI | GCGC | 4 cut(s) | 50, 81, 220, 425 |
| Cfr13I | GGNCC | 1 cut(s) | 584 |
| CseI | GACGC | 4 cut(s) | 224, 546, 678, 704 |
| Csp6I | GTAC | 2 cut(s) | 522, 728 |
| CviAII | CATG | 7 cut(s) | 196, 208, 272, 410, 427, 725, 820 |
| CviQI | GTAC | 2 cut(s) | 522, 728 |
| DdeI | CTNAG | 3 cut(s) | 492, 555, 854 |
| DinI | GGCGCC | 1 cut(s) | 424 |
| DpnI | GATC | 5 cut(s) | 317, 834, 846, 852, 876 |
| DpnII | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 582 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 582 |
| Eam1104I | CTCTTC | 1 cut(s) | 653 |
| EarI | CTCTTC | 1 cut(s) | 653 |
| Eco130I | CCWWGG | 1 cut(s) | 528 |
| Eco47I | GGWCC | 1 cut(s) | 584 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 528 |
| EgeI | GGCGCC | 1 cut(s) | 424 |
| EheI | GGCGCC | 1 cut(s) | 424 |
| ErhI | CCWWGG | 1 cut(s) | 528 |
| Esp3I | CGTCTC | 1 cut(s) | 661 |
| FaeI | CATG | 7 cut(s) | 199, 211, 275, 413, 430, 728, 823 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 578 |
| FatI | CATG | 7 cut(s) | 195, 207, 271, 409, 426, 724, 819 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 2 cut(s) | 35, 477 |
| GlaI | GCGC | 4 cut(s) | 49, 80, 219, 424 |
| GluI | GCNGC | 1 cut(s) | 278 |
| HaeII | RGCGCY | 1 cut(s) | 426 |
| HapII | CCGG | 1 cut(s) | 681 |
| HgaI | GACGC | 4 cut(s) | 224, 546, 678, 704 |
| HhaI | GCGC | 4 cut(s) | 50, 81, 220, 425 |
| Hin1I | GRCGYC | 2 cut(s) | 423, 696 |
| Hin1II | CATG | 7 cut(s) | 199, 211, 275, 413, 430, 728, 823 |
| Hin6I | GCGC | 4 cut(s) | 48, 79, 218, 423 |
| HinP1I | GCGC | 4 cut(s) | 48, 79, 218, 423 |
| HincII | GTYRAC | 1 cut(s) | 650 |
| HindII | GTYRAC | 1 cut(s) | 650 |
| HinfI | GANTC | 2 cut(s) | 325, 506 |
| HpaII | CCGG | 1 cut(s) | 681 |
| HphI | GGTGA | 2 cut(s) | 587, 704 |
| Hpy166II | GTNNAC | 2 cut(s) | 632, 650 |
| Hpy188I | TCNGA | 4 cut(s) | 71, 132, 375, 401 |
| Hpy188III | TCNNGA | 9 cut(s) | 107, 196, 319, 410, 573, 797, 836, 848, 878 |
| Hpy8I | GTNNAC | 2 cut(s) | 632, 650 |
| HpyAV | CCTTC | 3 cut(s) | 346, 396, 602 |
| HpyCH4III | ACNGT | 1 cut(s) | 641 |
| HpyCH4IV | ACGT | 7 cut(s) | 135, 291, 394, 432, 577, 652, 791 |
| HpyCH4V | TGCA | 2 cut(s) | 632, 776 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 809 |
| HpyF3I | CTNAG | 3 cut(s) | 492, 555, 854 |
| HpySE526I | ACGT | 7 cut(s) | 135, 291, 394, 432, 577, 652, 791 |
| Hsp92I | GRCGYC | 2 cut(s) | 423, 696 |
| Hsp92II | CATG | 7 cut(s) | 199, 211, 275, 413, 430, 728, 823 |
| HspAI | GCGC | 4 cut(s) | 48, 79, 218, 423 |
| KasI | GGCGCC | 1 cut(s) | 422 |
| Kzo9I | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| LmnI | GCTCC | 3 cut(s) | 225, 674, 751 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| LweI | GCATC | 1 cut(s) | 746 |
| MaeI | CTAG | 2 cut(s) | 35, 477 |
| MaeII | ACGT | 7 cut(s) | 135, 291, 394, 432, 577, 652, 791 |
| MaeIII | GTNAC | 1 cut(s) | 692 |
| MalI | GATC | 5 cut(s) | 317, 834, 846, 852, 876 |
| MboI | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| MboII | GAAGA | 7 cut(s) | 257, 334, 475, 670, 707, 842, 875 |
| MhlI | GDGCHC | 2 cut(s) | 141, 634 |
| MluCI | AATT | 3 cut(s) | 367, 568, 814 |
| Mly113I | GGCGCC | 1 cut(s) | 423 |
| MlyI | GAGTC | 2 cut(s) | 319, 515 |
| MnlI | CCTC | 7 cut(s) | 235, 527, 598, 618, 638, 688, 802 |
| MseI | TTAA | 3 cut(s) | 90, 237, 904 |
| MslI | CAYNNNNRTG | 3 cut(s) | 63, 194, 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 681 |
| MvnI | CGCG | 2 cut(s) | 218, 672 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 809 |
| NarI | GGCGCC | 1 cut(s) | 423 |
| NdeII | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| NlaIII | CATG | 7 cut(s) | 199, 211, 275, 413, 430, 728, 823 |
| NlaIV | GGNNCC | 3 cut(s) | 424, 638, 676 |
| NmuCI | GTSAC | 1 cut(s) | 692 |
| PagI | TCATGA | 2 cut(s) | 195, 409 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 890 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 2 cut(s) | 319, 514 |
| PluTI | GGCGCC | 1 cut(s) | 426 |
| PpsI | GAGTC | 2 cut(s) | 319, 514 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 3 cut(s) | 424, 638, 676 |
| PspPI | GGNCC | 1 cut(s) | 584 |
| PstNI | CAGNNNCTG | 1 cut(s) | 890 |
| RsaI | GTAC | 2 cut(s) | 523, 729 |
| RsaNI | GTAC | 2 cut(s) | 522, 728 |
| RseI | CAYNNNNRTG | 3 cut(s) | 63, 194, 210 |
| SaqAI | TTAA | 3 cut(s) | 90, 237, 904 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 5 cut(s) | 315, 832, 844, 850, 874 |
| Sau96I | GGNCC | 1 cut(s) | 584 |
| SchI | GAGTC | 2 cut(s) | 319, 515 |
| SduI | GDGCHC | 2 cut(s) | 141, 634 |
| SfaNI | GCATC | 1 cut(s) | 746 |
| SfcI | CTRYAG | 1 cut(s) | 514 |
| SfoI | GGCGCC | 1 cut(s) | 424 |
| SinI | GGWCC | 1 cut(s) | 584 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 63, 194, 210 |
| SmlI | CTYRAG | 2 cut(s) | 89, 174 |
| SmoI | CTYRAG | 2 cut(s) | 89, 174 |
| Sse9I | AATT | 3 cut(s) | 367, 568, 814 |
| SsiI | CCGC | 1 cut(s) | 672 |
| SspDI | GGCGCC | 1 cut(s) | 422 |
| SspMI | CTAG | 2 cut(s) | 35, 477 |
| StyI | CCWWGG | 1 cut(s) | 528 |
| TaaI | ACNGT | 1 cut(s) | 641 |
| TaiI | ACGT | 7 cut(s) | 138, 294, 397, 435, 580, 655, 794 |
| TaqI | TCGA | 2 cut(s) | 318, 849 |
| TasI | AATT | 3 cut(s) | 367, 568, 814 |
| Tru1I | TTAA | 3 cut(s) | 90, 237, 904 |
| Tru9I | TTAA | 3 cut(s) | 90, 237, 904 |
| TseFI | GTSAC | 1 cut(s) | 692 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 692 |
| TspDTI | ATGAA | 3 cut(s) | 224, 398, 443 |
| TspGWI | ACGGA | 1 cut(s) | 649 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 890 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 630 |
| VpaK11BI | GGWCC | 1 cut(s) | 584 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XspI | CTAG | 2 cut(s) | 35, 477 |