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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 292 |
| AatII | GACGTC | 1 cut(s) | 183 |
| Acc36I | ACCTGC | 2 cut(s) | 80, 292 |
| AccB1I | GGYRCC | 1 cut(s) | 896 |
| AciI | CCGC | 5 cut(s) | 35, 43, 291, 388, 1038 |
| AcoI | YGGCCR | 2 cut(s) | 883, 994 |
| AcsI | RAATTY | 1 cut(s) | 737 |
| AcuI | CTGAAG | 1 cut(s) | 177 |
| AcyI | GRCGYC | 2 cut(s) | 180, 897 |
| AdeI | CACNNNGTG | 1 cut(s) | 1078 |
| AfaI | GTAC | 1 cut(s) | 557 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 28, 35, 67, 292, 999 |
| AgsI | TTSAA | 3 cut(s) | 259, 685, 934 |
| AjiI | CACGTC | 1 cut(s) | 445 |
| AjnI | CCWGG | 1 cut(s) | 438 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 597, 629 |
| AluBI | AGCT | 4 cut(s) | 123, 255, 470, 1019 |
| AluI | AGCT | 4 cut(s) | 123, 255, 470, 1019 |
| Alw21I | GWGCWC | 1 cut(s) | 1021 |
| Alw26I | GTCTC | 2 cut(s) | 601, 883 |
| Ama87I | CYCGRG | 1 cut(s) | 428 |
| AoxI | GGCC | 4 cut(s) | 355, 402, 883, 994 |
| ApeKI | GCWGC | 3 cut(s) | 32, 86, 488 |
| ApoI | RAATTY | 1 cut(s) | 737 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 714 |
| AspLEI | GCGC | 2 cut(s) | 899, 940 |
| AspS9I | GGNCC | 4 cut(s) | 70, 274, 356, 550 |
| AsuC2I | CCSGG | 2 cut(s) | 22, 272 |
| AsuHPI | GGTGA | 2 cut(s) | 18, 1027 |
| AvaI | CYCGRG | 1 cut(s) | 428 |
| AvaII | GGWCC | 3 cut(s) | 70, 274, 550 |
| BalI | TGGCCA | 1 cut(s) | 885 |
| BanI | GGYRCC | 1 cut(s) | 896 |
| BanII | GRGCYC | 3 cut(s) | 22, 116, 1021 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 770, 802 |
| BauI | CACGAG | 1 cut(s) | 1020 |
| BbsI | GAAGAC | 4 cut(s) | 12, 165, 582, 785 |
| Bbv12I | GWGCWC | 1 cut(s) | 1021 |
| BbvI | GCAGC | 3 cut(s) | 19, 73, 500 |
| BccI | CCATC | 7 cut(s) | 139, 401, 524, 651, 803, 804, 924 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciT130I | CCWGG | 1 cut(s) | 440 |
| BciVI | GTATCC | 1 cut(s) | 1000 |
| BclI | TGATCA | 1 cut(s) | 1102 |
| BcnI | CCSGG | 2 cut(s) | 22, 272 |
| BcoDI | GTCTC | 2 cut(s) | 601, 883 |
| BfaI | CTAG | 3 cut(s) | 416, 435, 647 |
| BfmI | CTRYAG | 1 cut(s) | 87 |
| BfoI | RGCGCY | 2 cut(s) | 900, 941 |
| BfuAI | ACCTGC | 2 cut(s) | 80, 292 |
| BfuI | GTATCC | 1 cut(s) | 1000 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 288, 497 |
| BisI | GCNGC | 3 cut(s) | 33, 87, 489 |
| BlsI | GCNGC | 3 cut(s) | 34, 88, 490 |
| Bme1390I | CCNGG | 3 cut(s) | 22, 272, 440 |
| Bme18I | GGWCC | 3 cut(s) | 70, 274, 550 |
| BmeT110I | CYCGRG | 1 cut(s) | 428 |
| BmgBI | CACGTC | 1 cut(s) | 445 |
| BmgT120I | GGNCC | 4 cut(s) | 70, 274, 356, 550 |
| BmiI | GGNNCC | 7 cut(s) | 19, 72, 153, 196, 275, 839, 898 |
| BmrFI | CCNGG | 3 cut(s) | 22, 272, 440 |
| BpiI | GAAGAC | 4 cut(s) | 12, 165, 582, 785 |
| BpuEI | CTTGAG | 2 cut(s) | 383, 450 |
| BpuMI | CCSGG | 2 cut(s) | 22, 272 |
| BsaBI | GATNNNNATC | 1 cut(s) | 813 |
| BsaHI | GRCGYC | 2 cut(s) | 180, 897 |
| BsaI | GGTCTC | 1 cut(s) | 601 |
| BsaJI | CCNNGG | 1 cut(s) | 286 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 861, 891 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 28, 35, 67, 292, 999 |
| Bse118I | RCCGGY | 1 cut(s) | 28 |
| Bse1I | ACTGG | 3 cut(s) | 249, 358, 553 |
| Bse8I | GATNNNNATC | 1 cut(s) | 813 |
| BseBI | CCWGG | 1 cut(s) | 440 |
| BseDI | CCNNGG | 1 cut(s) | 286 |
| BseGI | GGATG | 2 cut(s) | 519, 547 |
| BseJI | GATNNNNATC | 1 cut(s) | 813 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 28, 35, 67, 292, 999 |
| BseMII | CTCAG | 1 cut(s) | 202 |
| BseNI | ACTGG | 3 cut(s) | 249, 358, 553 |
| BseXI | GCAGC | 3 cut(s) | 19, 73, 500 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| BshFI | GGCC | 4 cut(s) | 357, 404, 885, 996 |
| BshNI | GGYRCC | 1 cut(s) | 896 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1021 |
| BsiHKCI | CYCGRG | 1 cut(s) | 428 |
| BsiSI | CCGG | 4 cut(s) | 22, 29, 271, 993 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 28, 35, 67, 292, 999 |
| BsmAI | GTCTC | 2 cut(s) | 601, 883 |
| BsmBI | CGTCTC | 1 cut(s) | 883 |
| BsnI | GGCC | 4 cut(s) | 357, 404, 885, 996 |
| Bso31I | GGTCTC | 1 cut(s) | 601 |
| BsoBI | CYCGRG | 1 cut(s) | 428 |
| Bsp1286I | GDGCHC | 3 cut(s) | 22, 116, 1021 |
| Bsp143I | GATC | 3 cut(s) | 205, 1090, 1102 |
| Bsp19I | CCATGG | 1 cut(s) | 286 |
| BspACI | CCGC | 5 cut(s) | 35, 43, 291, 388, 1038 |
| BspANI | GGCC | 4 cut(s) | 357, 404, 885, 996 |
| BspCNI | CTCAG | 1 cut(s) | 201 |
| BspHI | TCATGA | 1 cut(s) | 379 |
| BspLI | GGNNCC | 7 cut(s) | 19, 72, 153, 196, 275, 839, 898 |
| BspMAI | CTGCAG | 1 cut(s) | 91 |
| BspMI | ACCTGC | 2 cut(s) | 80, 292 |
| BspT107I | GGYRCC | 1 cut(s) | 896 |
| BspTNI | GGTCTC | 1 cut(s) | 601 |
| BsrFI | RCCGGY | 1 cut(s) | 28 |
| BsrI | ACTGG | 3 cut(s) | 249, 358, 553 |
| BssAI | RCCGGY | 1 cut(s) | 28 |
| BssECI | CCNNGG | 1 cut(s) | 286 |
| BssMI | GATC | 3 cut(s) | 205, 1090, 1102 |
| BssNI | GRCGYC | 2 cut(s) | 180, 897 |
| BssSI | CACGAG | 1 cut(s) | 1020 |
| BssT1I | CCWWGG | 1 cut(s) | 286 |
| Bst2BI | CACGAG | 1 cut(s) | 1020 |
| Bst2UI | CCWGG | 1 cut(s) | 440 |
| Bst4CI | ACNGT | 1 cut(s) | 454 |
| Bst6I | CTCTTC | 2 cut(s) | 145, 838 |
| BstACI | GRCGYC | 2 cut(s) | 180, 897 |
| BstDEI | CTNAG | 3 cut(s) | 188, 493, 909 |
| BstDSI | CCRYGG | 1 cut(s) | 286 |
| BstEII | GGTNACC | 1 cut(s) | 24 |
| BstF5I | GGATG | 2 cut(s) | 519, 547 |
| BstH2I | RGCGCY | 2 cut(s) | 900, 941 |
| BstHHI | GCGC | 2 cut(s) | 899, 940 |
| BstKTI | GATC | 3 cut(s) | 208, 1093, 1105 |
| BstMAI | GTCTC | 2 cut(s) | 601, 883 |
| BstMBI | GATC | 3 cut(s) | 205, 1090, 1102 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 120, 288, 497, 506, 935, 1046 |
| BstNI | CCWGG | 1 cut(s) | 440 |
| BstPI | GGTNACC | 1 cut(s) | 24 |
| BstSCI | CCNGG | 3 cut(s) | 20, 270, 438 |
| BstSFI | CTRYAG | 1 cut(s) | 87 |
| BstV1I | GCAGC | 3 cut(s) | 19, 73, 500 |
| BstV2I | GAAGAC | 4 cut(s) | 12, 165, 582, 785 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 893 |
| BsuI | GTATCC | 1 cut(s) | 1000 |
| BsuRI | GGCC | 4 cut(s) | 357, 404, 885, 996 |
| BtgI | CCRYGG | 1 cut(s) | 286 |
| BtgZI | GCGATG | 1 cut(s) | 779 |
| BtrI | CACGTC | 1 cut(s) | 445 |
| BtsCI | GGATG | 2 cut(s) | 519, 547 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 2 cut(s) | 196, 303 |
| BveI | ACCTGC | 2 cut(s) | 80, 292 |
| CciI | TCATGA | 1 cut(s) | 379 |
| CfoI | GCGC | 2 cut(s) | 899, 940 |
| Cfr10I | RCCGGY | 1 cut(s) | 28 |
| Cfr13I | GGNCC | 4 cut(s) | 70, 274, 356, 550 |
| CseI | GACGC | 1 cut(s) | 935 |
| Csp6I | GTAC | 1 cut(s) | 556 |
| CviAII | CATG | 3 cut(s) | 287, 380, 887 |
| CviQI | GTAC | 1 cut(s) | 556 |
| DdeI | CTNAG | 3 cut(s) | 188, 493, 909 |
| DinI | GGCGCC | 1 cut(s) | 898 |
| DpnI | GATC | 3 cut(s) | 207, 1092, 1104 |
| DpnII | GATC | 3 cut(s) | 205, 1090, 1102 |
| DraIII | CACNNNGTG | 1 cut(s) | 1078 |
| EaeI | YGGCCR | 2 cut(s) | 883, 994 |
| Eam1104I | CTCTTC | 2 cut(s) | 145, 838 |
| EarI | CTCTTC | 2 cut(s) | 145, 838 |
| EciI | GGCGGA | 1 cut(s) | 377 |
| Ecl136II | GAGCTC | 1 cut(s) | 1019 |
| Eco130I | CCWWGG | 1 cut(s) | 286 |
| Eco24I | GRGCYC | 3 cut(s) | 22, 116, 1021 |
| Eco31I | GGTCTC | 1 cut(s) | 601 |
| Eco32I | GATATC | 1 cut(s) | 754 |
| Eco47I | GGWCC | 3 cut(s) | 70, 274, 550 |
| Eco53kI | GAGCTC | 1 cut(s) | 1019 |
| Eco57I | CTGAAG | 1 cut(s) | 177 |
| Eco88I | CYCGRG | 1 cut(s) | 428 |
| Eco91I | GGTNACC | 1 cut(s) | 24 |
| EcoICRI | GAGCTC | 1 cut(s) | 1019 |
| EcoO109I | RGGNCCY | 1 cut(s) | 70 |
| EcoO65I | GGTNACC | 1 cut(s) | 24 |
| EcoRI | GAATTC | 1 cut(s) | 737 |
| EcoRII | CCWGG | 1 cut(s) | 438 |
| EcoRV | GATATC | 1 cut(s) | 754 |
| EcoT14I | CCWWGG | 1 cut(s) | 286 |
| EcoT38I | GRGCYC | 3 cut(s) | 22, 116, 1021 |
| EgeI | GGCGCC | 1 cut(s) | 898 |
| EheI | GGCGCC | 1 cut(s) | 898 |
| ErhI | CCWWGG | 1 cut(s) | 286 |
| Esp3I | CGTCTC | 1 cut(s) | 883 |
| FaeI | CATG | 3 cut(s) | 290, 383, 890 |
| FatI | CATG | 3 cut(s) | 286, 379, 886 |
| FauI | CCCGC | 2 cut(s) | 28, 284 |
| FauNDI | CATATG | 2 cut(s) | 232, 537 |
| FbaI | TGATCA | 1 cut(s) | 1102 |
| Fnu4HI | GCNGC | 3 cut(s) | 33, 87, 489 |
| FokI | GGATG | 2 cut(s) | 506, 554 |
| FriOI | GRGCYC | 3 cut(s) | 22, 116, 1021 |
| Fsp4HI | GCNGC | 3 cut(s) | 33, 87, 489 |
| FspBI | CTAG | 3 cut(s) | 416, 435, 647 |
| GlaI | GCGC | 2 cut(s) | 898, 939 |
| GluI | GCNGC | 3 cut(s) | 33, 87, 489 |
| HaeII | RGCGCY | 2 cut(s) | 900, 941 |
| HaeIII | GGCC | 4 cut(s) | 357, 404, 885, 996 |
| HapII | CCGG | 4 cut(s) | 22, 29, 271, 993 |
| HgaI | GACGC | 1 cut(s) | 935 |
| HhaI | GCGC | 2 cut(s) | 899, 940 |
| Hin1I | GRCGYC | 2 cut(s) | 180, 897 |
| Hin1II | CATG | 3 cut(s) | 290, 383, 890 |
| Hin6I | GCGC | 2 cut(s) | 897, 938 |
| HinP1I | GCGC | 2 cut(s) | 897, 938 |
| HincII | GTYRAC | 1 cut(s) | 851 |
| HindII | GTYRAC | 1 cut(s) | 851 |
| HindIII | AAGCTT | 2 cut(s) | 253, 468 |
| HpaII | CCGG | 4 cut(s) | 22, 29, 271, 993 |
| HphI | GGTGA | 2 cut(s) | 18, 1027 |
| Hpy166II | GTNNAC | 1 cut(s) | 851 |
| Hpy188I | TCNGA | 5 cut(s) | 17, 145, 151, 709, 958 |
| Hpy8I | GTNNAC | 1 cut(s) | 851 |
| Hpy99I | CGWCG | 1 cut(s) | 185 |
| HpyAV | CCTTC | 2 cut(s) | 579, 800 |
| HpyCH4III | ACNGT | 1 cut(s) | 454 |
| HpyCH4IV | ACGT | 5 cut(s) | 180, 444, 621, 853, 876 |
| HpyCH4V | TGCA | 3 cut(s) | 89, 301, 804 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 120, 288, 497, 506, 935, 1046 |
| HpyF3I | CTNAG | 3 cut(s) | 188, 493, 909 |
| HpySE526I | ACGT | 5 cut(s) | 180, 444, 621, 853, 876 |
| Hsp92I | GRCGYC | 2 cut(s) | 180, 897 |
| Hsp92II | CATG | 3 cut(s) | 290, 383, 890 |
| HspAI | GCGC | 2 cut(s) | 897, 938 |
| KasI | GGCGCC | 1 cut(s) | 896 |
| Ksp22I | TGATCA | 1 cut(s) | 1102 |
| Kzo9I | GATC | 3 cut(s) | 205, 1090, 1102 |
| LmnI | GCTCC | 3 cut(s) | 17, 200, 343 |
| Lsp1109I | GCAGC | 3 cut(s) | 19, 73, 500 |
| MaeI | CTAG | 3 cut(s) | 416, 435, 647 |
| MaeII | ACGT | 5 cut(s) | 180, 444, 621, 853, 876 |
| MaeIII | GTNAC | 3 cut(s) | 24, 314, 1033 |
| MalI | GATC | 3 cut(s) | 207, 1092, 1104 |
| MboI | GATC | 3 cut(s) | 205, 1090, 1102 |
| MhlI | GDGCHC | 3 cut(s) | 22, 116, 1021 |
| MlsI | TGGCCA | 1 cut(s) | 885 |
| MluCI | AATT | 3 cut(s) | 326, 737, 1029 |
| MluNI | TGGCCA | 1 cut(s) | 885 |
| Mly113I | GGCGCC | 1 cut(s) | 897 |
| MlyI | GAGTC | 5 cut(s) | 155, 523, 623, 775, 962 |
| MnlI | CCTC | 9 cut(s) | 278, 293, 490, 677, 839, 855, 859, 863, 951 |
| Mox20I | TGGCCA | 1 cut(s) | 885 |
| MroXI | GAANNNNTTC | 1 cut(s) | 714 |
| MscI | TGGCCA | 1 cut(s) | 885 |
| MseI | TTAA | 3 cut(s) | 218, 723, 731 |
| MslI | CAYNNNNRTG | 4 cut(s) | 524, 540, 891, 921 |
| Msp20I | TGGCCA | 1 cut(s) | 885 |
| MspI | CCGG | 4 cut(s) | 22, 29, 271, 993 |
| MspR9I | CCNGG | 3 cut(s) | 22, 272, 440 |
| MvaI | CCWGG | 1 cut(s) | 440 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 120, 288, 497, 506, 935, 1046 |
| NarI | GGCGCC | 1 cut(s) | 897 |
| NciI | CCSGG | 2 cut(s) | 22, 272 |
| NcoI | CCATGG | 1 cut(s) | 286 |
| NdeI | CATATG | 2 cut(s) | 232, 537 |
| NdeII | GATC | 3 cut(s) | 205, 1090, 1102 |
| NlaIII | CATG | 3 cut(s) | 290, 383, 890 |
| NlaIV | GGNNCC | 7 cut(s) | 19, 72, 153, 196, 275, 839, 898 |
| NmuCI | GTSAC | 2 cut(s) | 24, 1033 |
| PaeR7I | CTCGAG | 1 cut(s) | 428 |
| PagI | TCATGA | 1 cut(s) | 379 |
| PaqCI | CACCTGC | 1 cut(s) | 292 |
| PdmI | GAANNNNTTC | 1 cut(s) | 714 |
| PfeI | GAWTC | 5 cut(s) | 39, 146, 411, 424, 545 |
| PflFI | GACNNNGTC | 1 cut(s) | 11 |
| PkrI | GCNGC | 3 cut(s) | 34, 88, 490 |
| PleI | GAGTC | 5 cut(s) | 155, 523, 623, 775, 961 |
| PluTI | GGCGCC | 1 cut(s) | 900 |
| PpsI | GAGTC | 5 cut(s) | 155, 523, 623, 775, 961 |
| PpuMI | RGGWCCY | 1 cut(s) | 70 |
| Psp124BI | GAGCTC | 1 cut(s) | 1021 |
| Psp5II | RGGWCCY | 1 cut(s) | 70 |
| Psp6I | CCWGG | 1 cut(s) | 438 |
| PspEI | GGTNACC | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 438 |
| PspN4I | GGNNCC | 7 cut(s) | 19, 72, 153, 196, 275, 839, 898 |
| PspPI | GGNCC | 4 cut(s) | 70, 274, 356, 550 |
| PspPPI | RGGWCCY | 1 cut(s) | 70 |
| PstI | CTGCAG | 1 cut(s) | 91 |
| PsyI | GACNNNGTC | 1 cut(s) | 11 |
| RsaI | GTAC | 1 cut(s) | 557 |
| RsaNI | GTAC | 1 cut(s) | 556 |
| RseI | CAYNNNNRTG | 4 cut(s) | 524, 540, 891, 921 |
| SacI | GAGCTC | 1 cut(s) | 1021 |
| SaqAI | TTAA | 3 cut(s) | 218, 723, 731 |
| SatI | GCNGC | 3 cut(s) | 33, 87, 489 |
| Sau3AI | GATC | 3 cut(s) | 205, 1090, 1102 |
| Sau96I | GGNCC | 4 cut(s) | 70, 274, 356, 550 |
| SchI | GAGTC | 5 cut(s) | 155, 523, 623, 775, 962 |
| ScrFI | CCNGG | 3 cut(s) | 22, 272, 440 |
| SduI | GDGCHC | 3 cut(s) | 22, 116, 1021 |
| SfcI | CTRYAG | 1 cut(s) | 87 |
| SfoI | GGCGCC | 1 cut(s) | 898 |
| Sfr274I | CTCGAG | 1 cut(s) | 428 |
| SinI | GGWCC | 3 cut(s) | 70, 274, 550 |
| SlaI | CTCGAG | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 524, 540, 891, 921 |
| SmlI | CTYRAG | 3 cut(s) | 398, 428, 465 |
| SmoI | CTYRAG | 3 cut(s) | 398, 428, 465 |
| Sse9I | AATT | 3 cut(s) | 326, 737, 1029 |
| SsiI | CCGC | 5 cut(s) | 35, 43, 291, 388, 1038 |
| SspDI | GGCGCC | 1 cut(s) | 896 |
| SspMI | CTAG | 3 cut(s) | 416, 435, 647 |
| SstI | GAGCTC | 1 cut(s) | 1021 |
| StyD4I | CCNGG | 3 cut(s) | 20, 270, 438 |
| StyI | CCWWGG | 1 cut(s) | 286 |
| TaaI | ACNGT | 1 cut(s) | 454 |
| TaiI | ACGT | 5 cut(s) | 183, 447, 624, 856, 879 |
| TaqI | TCGA | 5 cut(s) | 183, 308, 429, 603, 979 |
| TaqII | GACCGA | 1 cut(s) | 538 |
| TasI | AATT | 3 cut(s) | 326, 737, 1029 |
| TfiI | GAWTC | 5 cut(s) | 39, 146, 411, 424, 545 |
| Tru1I | TTAA | 3 cut(s) | 218, 723, 731 |
| Tru9I | TTAA | 3 cut(s) | 218, 723, 731 |
| TscAI | CASTG | 2 cut(s) | 196, 303 |
| TseFI | GTSAC | 2 cut(s) | 24, 1033 |
| TseI | GCWGC | 3 cut(s) | 32, 86, 488 |
| Tsp45I | GTSAC | 2 cut(s) | 24, 1033 |
| TspDTI | ATGAA | 3 cut(s) | 249, 368, 585 |
| TspGWI | ACGGA | 2 cut(s) | 659, 850 |
| TspRI | CASTG | 2 cut(s) | 196, 303 |
| Tth111I | GACNNNGTC | 1 cut(s) | 11 |
| VpaK11BI | GGWCC | 3 cut(s) | 70, 274, 550 |
| XapI | RAATTY | 1 cut(s) | 737 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 284 |
| XhoI | CTCGAG | 1 cut(s) | 428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 714 |
| XspI | CTAG | 3 cut(s) | 416, 435, 647 |
| ZraI | GACGTC | 1 cut(s) | 181 |