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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 228 |
| AccB1I | GGYRCC | 1 cut(s) | 341 |
| AccII | CGCG | 1 cut(s) | 168 |
| AccIII | TCCGGA | 1 cut(s) | 148 |
| AciI | CCGC | 2 cut(s) | 262, 483 |
| AclWI | GGATC | 2 cut(s) | 50, 120 |
| AcoI | YGGCCR | 1 cut(s) | 328 |
| AcyI | GRCGYC | 1 cut(s) | 342 |
| AdeI | CACNNNGTG | 1 cut(s) | 523 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 179, 444 |
| AgsI | TTSAA | 1 cut(s) | 379 |
| AluBI | AGCT | 4 cut(s) | 61, 71, 464, 515 |
| AluI | AGCT | 4 cut(s) | 61, 71, 464, 515 |
| Alw21I | GWGCWC | 2 cut(s) | 63, 466 |
| AlwI | GGATC | 2 cut(s) | 50, 120 |
| Aor13HI | TCCGGA | 1 cut(s) | 148 |
| AoxI | GGCC | 2 cut(s) | 182, 328 |
| ApaI | GGGCCC | 1 cut(s) | 186 |
| AspLEI | GCGC | 3 cut(s) | 170, 344, 385 |
| AspS9I | GGNCC | 3 cut(s) | 182, 183, 230 |
| AsuHPI | GGTGA | 1 cut(s) | 472 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 2 cut(s) | 186, 451 |
| BalI | TGGCCA | 1 cut(s) | 330 |
| BanI | GGYRCC | 1 cut(s) | 341 |
| BanII | GRGCYC | 3 cut(s) | 63, 186, 466 |
| BauI | CACGAG | 1 cut(s) | 465 |
| BbsI | GAAGAC | 1 cut(s) | 549 |
| Bbv12I | GWGCWC | 2 cut(s) | 63, 466 |
| BccI | CCATC | 1 cut(s) | 369 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 14, 48 |
| BciVI | GTATCC | 2 cut(s) | 205, 445 |
| BfaI | CTAG | 1 cut(s) | 551 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfoI | RGCGCY | 2 cut(s) | 345, 386 |
| BfuI | GTATCC | 2 cut(s) | 205, 445 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 3 cut(s) | 182, 183, 230 |
| BmiI | GGNNCC | 4 cut(s) | 184, 185, 284, 343 |
| BpiI | GAAGAC | 1 cut(s) | 549 |
| Bsa29I | ATCGAT | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 1 cut(s) | 129 |
| BsaWI | WCCGGW | 2 cut(s) | 148, 437 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 179, 444 |
| BseAI | TCCGGA | 1 cut(s) | 148 |
| BseCI | ATCGAT | 1 cut(s) | 24 |
| BseDI | CCNNGG | 1 cut(s) | 129 |
| BseGI | GGATG | 1 cut(s) | 99 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 179, 444 |
| BseSI | GKGCMC | 2 cut(s) | 186, 451 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| BshFI | GGCC | 2 cut(s) | 184, 330 |
| BshNI | GGYRCC | 1 cut(s) | 341 |
| BshVI | ATCGAT | 1 cut(s) | 24 |
| BsiHKAI | GWGCWC | 2 cut(s) | 63, 466 |
| BsiSI | CCGG | 2 cut(s) | 149, 438 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 179, 444 |
| BsnI | GGCC | 2 cut(s) | 184, 330 |
| Bsp120I | GGGCCC | 1 cut(s) | 182 |
| Bsp1286I | GDGCHC | 4 cut(s) | 63, 186, 451, 466 |
| Bsp13I | TCCGGA | 1 cut(s) | 148 |
| Bsp143I | GATC | 4 cut(s) | 42, 125, 535, 547 |
| BspACI | CCGC | 2 cut(s) | 262, 483 |
| BspANI | GGCC | 2 cut(s) | 184, 330 |
| BspDI | ATCGAT | 1 cut(s) | 24 |
| BspEI | TCCGGA | 1 cut(s) | 148 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspHI | TCATGA | 1 cut(s) | 55 |
| BspLI | GGNNCC | 4 cut(s) | 184, 185, 284, 343 |
| BspMAI | CTGCAG | 1 cut(s) | 37 |
| BspPI | GGATC | 2 cut(s) | 50, 120 |
| BspT107I | GGYRCC | 1 cut(s) | 341 |
| BssECI | CCNNGG | 1 cut(s) | 129 |
| BssMI | GATC | 4 cut(s) | 42, 125, 535, 547 |
| BssNI | GRCGYC | 1 cut(s) | 342 |
| BssSI | CACGAG | 1 cut(s) | 465 |
| Bst2BI | CACGAG | 1 cut(s) | 465 |
| Bst6I | CTCTTC | 1 cut(s) | 283 |
| BstACI | GRCGYC | 1 cut(s) | 342 |
| BstDEI | CTNAG | 3 cut(s) | 9, 206, 354 |
| BstDSI | CCRYGG | 1 cut(s) | 129 |
| BstEII | GGTNACC | 1 cut(s) | 257 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 177 |
| BstF5I | GGATG | 1 cut(s) | 99 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstH2I | RGCGCY | 2 cut(s) | 345, 386 |
| BstHHI | GCGC | 3 cut(s) | 170, 344, 385 |
| BstKTI | GATC | 4 cut(s) | 45, 128, 538, 550 |
| BstMBI | GATC | 4 cut(s) | 42, 125, 535, 547 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 190, 491, 512 |
| BstPI | GGTNACC | 1 cut(s) | 257 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstSLI | GKGCMC | 2 cut(s) | 186, 451 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstV2I | GAAGAC | 1 cut(s) | 549 |
| BstX2I | RGATCY | 1 cut(s) | 125 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 338 |
| BstYI | RGATCY | 1 cut(s) | 125 |
| Bsu15I | ATCGAT | 1 cut(s) | 24 |
| BsuI | GTATCC | 2 cut(s) | 205, 445 |
| BsuRI | GGCC | 2 cut(s) | 184, 330 |
| BsuTUI | ATCGAT | 1 cut(s) | 24 |
| BtgI | CCRYGG | 1 cut(s) | 129 |
| BtsCI | GGATG | 1 cut(s) | 99 |
| CciI | TCATGA | 1 cut(s) | 55 |
| CfoI | GCGC | 3 cut(s) | 170, 344, 385 |
| Cfr13I | GGNCC | 3 cut(s) | 182, 183, 230 |
| ClaI | ATCGAT | 1 cut(s) | 24 |
| CviAII | CATG | 3 cut(s) | 56, 92, 332 |
| CviJI | RGCY | 7 cut(s) | 61, 71, 184, 330, 360, 464, 515 |
| CviKI_1 | RGCY | 7 cut(s) | 61, 71, 184, 330, 360, 464, 515 |
| DdeI | CTNAG | 3 cut(s) | 9, 206, 354 |
| DinI | GGCGCC | 1 cut(s) | 343 |
| DpnI | GATC | 4 cut(s) | 44, 127, 537, 549 |
| DpnII | GATC | 4 cut(s) | 42, 125, 535, 547 |
| DraIII | CACNNNGTG | 1 cut(s) | 523 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 228 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 228 |
| EaeI | YGGCCR | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 1 cut(s) | 283 |
| EarI | CTCTTC | 1 cut(s) | 283 |
| Ecl136II | GAGCTC | 2 cut(s) | 61, 464 |
| Eco24I | GRGCYC | 3 cut(s) | 63, 186, 466 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco53kI | GAGCTC | 2 cut(s) | 61, 464 |
| Eco91I | GGTNACC | 1 cut(s) | 257 |
| EcoICRI | GAGCTC | 2 cut(s) | 61, 464 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 177 |
| EcoO109I | RGGNCCY | 2 cut(s) | 182, 183 |
| EcoO65I | GGTNACC | 1 cut(s) | 257 |
| EcoT38I | GRGCYC | 3 cut(s) | 63, 186, 466 |
| EgeI | GGCGCC | 1 cut(s) | 343 |
| EheI | GGCGCC | 1 cut(s) | 343 |
| FaeI | CATG | 3 cut(s) | 59, 95, 335 |
| FatI | CATG | 3 cut(s) | 55, 91, 331 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 3 cut(s) | 63, 186, 466 |
| FspBI | CTAG | 1 cut(s) | 551 |
| GlaI | GCGC | 3 cut(s) | 169, 343, 384 |
| HaeII | RGCGCY | 2 cut(s) | 345, 386 |
| HaeIII | GGCC | 2 cut(s) | 184, 330 |
| HapII | CCGG | 2 cut(s) | 149, 438 |
| HhaI | GCGC | 3 cut(s) | 170, 344, 385 |
| Hin1I | GRCGYC | 1 cut(s) | 342 |
| Hin1II | CATG | 3 cut(s) | 59, 95, 335 |
| Hin6I | GCGC | 3 cut(s) | 168, 342, 383 |
| HinP1I | GCGC | 3 cut(s) | 168, 342, 383 |
| HincII | GTYRAC | 1 cut(s) | 296 |
| HindII | GTYRAC | 1 cut(s) | 296 |
| HinfI | GANTC | 2 cut(s) | 21, 152 |
| HpaII | CCGG | 2 cut(s) | 149, 438 |
| HphI | GGTGA | 1 cut(s) | 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 296 |
| Hpy188III | TCNNGA | 8 cut(s) | 56, 123, 149, 219, 423, 467, 539, 551 |
| Hpy8I | GTNNAC | 1 cut(s) | 296 |
| HpyAV | CCTTC | 1 cut(s) | 248 |
| HpyCH4IV | ACGT | 2 cut(s) | 223, 298 |
| HpyCH4V | TGCA | 1 cut(s) | 35 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 190, 491, 512 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 206, 354 |
| HpySE526I | ACGT | 2 cut(s) | 223, 298 |
| Hsp92I | GRCGYC | 1 cut(s) | 342 |
| Hsp92II | CATG | 3 cut(s) | 59, 95, 335 |
| HspAI | GCGC | 3 cut(s) | 168, 342, 383 |
| KasI | GGCGCC | 1 cut(s) | 341 |
| Kpn2I | TCCGGA | 1 cut(s) | 148 |
| Kzo9I | GATC | 4 cut(s) | 42, 125, 535, 547 |
| LmnI | GCTCC | 1 cut(s) | 68 |
| LpnPI | CCDG | 6 cut(s) | 21, 162, 204, 213, 312, 451 |
| MaeI | CTAG | 1 cut(s) | 551 |
| MaeII | ACGT | 2 cut(s) | 223, 298 |
| MaeIII | GTNAC | 3 cut(s) | 28, 257, 478 |
| MalI | GATC | 4 cut(s) | 44, 127, 537, 549 |
| MboI | GATC | 4 cut(s) | 42, 125, 535, 547 |
| MboII | GAAGA | 5 cut(s) | 121, 300, 482, 545, 554 |
| MflI | RGATCY | 1 cut(s) | 125 |
| MhlI | GDGCHC | 4 cut(s) | 63, 186, 451, 466 |
| MlsI | TGGCCA | 1 cut(s) | 330 |
| MluCI | AATT | 3 cut(s) | 118, 157, 474 |
| MluNI | TGGCCA | 1 cut(s) | 330 |
| Mly113I | GGCGCC | 1 cut(s) | 342 |
| MnlI | CCTC | 6 cut(s) | 173, 284, 304, 308, 334, 396 |
| Mox20I | TGGCCA | 1 cut(s) | 330 |
| MroI | TCCGGA | 1 cut(s) | 148 |
| MscI | TGGCCA | 1 cut(s) | 330 |
| MslI | CAYNNNNRTG | 3 cut(s) | 104, 336, 366 |
| Msp20I | TGGCCA | 1 cut(s) | 330 |
| MspI | CCGG | 2 cut(s) | 149, 438 |
| MvnI | CGCG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 190, 491, 512 |
| NarI | GGCGCC | 1 cut(s) | 342 |
| NdeII | GATC | 4 cut(s) | 42, 125, 535, 547 |
| NlaIII | CATG | 3 cut(s) | 59, 95, 335 |
| NlaIV | GGNNCC | 4 cut(s) | 184, 185, 284, 343 |
| NmuCI | GTSAC | 1 cut(s) | 478 |
| PagI | TCATGA | 1 cut(s) | 55 |
| PfeI | GAWTC | 2 cut(s) | 21, 152 |
| PluTI | GGCGCC | 1 cut(s) | 345 |
| Psp124BI | GAGCTC | 2 cut(s) | 63, 466 |
| PspEI | GGTNACC | 1 cut(s) | 257 |
| PspN4I | GGNNCC | 4 cut(s) | 184, 185, 284, 343 |
| PspOMI | GGGCCC | 1 cut(s) | 182 |
| PspPI | GGNCC | 3 cut(s) | 182, 183, 230 |
| PstI | CTGCAG | 1 cut(s) | 37 |
| PsuI | RGATCY | 1 cut(s) | 125 |
| RseI | CAYNNNNRTG | 3 cut(s) | 104, 336, 366 |
| SacI | GAGCTC | 2 cut(s) | 63, 466 |
| Sau3AI | GATC | 4 cut(s) | 42, 125, 535, 547 |
| Sau96I | GGNCC | 3 cut(s) | 182, 183, 230 |
| SduI | GDGCHC | 4 cut(s) | 63, 186, 451, 466 |
| SetI | ASST | 8 cut(s) | 63, 73, 226, 259, 295, 301, 466, 517 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SfoI | GGCGCC | 1 cut(s) | 343 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 104, 336, 366 |
| Sse9I | AATT | 3 cut(s) | 118, 157, 474 |
| SsiI | CCGC | 2 cut(s) | 262, 483 |
| SspDI | GGCGCC | 1 cut(s) | 341 |
| SspMI | CTAG | 1 cut(s) | 551 |
| SstI | GAGCTC | 2 cut(s) | 63, 466 |
| TaiI | ACGT | 2 cut(s) | 226, 301 |
| TaqI | TCGA | 4 cut(s) | 19, 24, 122, 424 |
| TasI | AATT | 3 cut(s) | 118, 157, 474 |
| TfiI | GAWTC | 2 cut(s) | 21, 152 |
| TseFI | GTSAC | 1 cut(s) | 478 |
| Tsp45I | GTSAC | 1 cut(s) | 478 |
| TspDTI | ATGAA | 2 cut(s) | 44, 89 |
| TspGWI | ACGGA | 3 cut(s) | 55, 118, 295 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 177 |
| XbaI | TCTAGA | 1 cut(s) | 550 |
| XspI | CTAG | 1 cut(s) | 551 |