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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 450 |
| AccB1I | GGYRCC | 1 cut(s) | 405 |
| AciI | CCGC | 3 cut(s) | 82, 484, 705 |
| AclWI | GGATC | 1 cut(s) | 342 |
| AcoI | YGGCCR | 1 cut(s) | 550 |
| AcsI | RAATTY | 1 cut(s) | 696 |
| AcuI | CTGAAG | 1 cut(s) | 327 |
| AdeI | CACNNNGTG | 1 cut(s) | 745 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 401 |
| AgsI | TTSAA | 2 cut(s) | 97, 601 |
| AluBI | AGCT | 4 cut(s) | 293, 364, 686, 737 |
| AluI | AGCT | 4 cut(s) | 293, 364, 686, 737 |
| Alw21I | GWGCWC | 1 cut(s) | 688 |
| Alw26I | GTCTC | 2 cut(s) | 13, 217 |
| AlwI | GGATC | 1 cut(s) | 342 |
| AoxI | GGCC | 1 cut(s) | 550 |
| ApoI | RAATTY | 1 cut(s) | 696 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 126 |
| AspLEI | GCGC | 1 cut(s) | 566 |
| AspS9I | GGNCC | 1 cut(s) | 452 |
| AsuHPI | GGTGA | 1 cut(s) | 694 |
| AvaII | GGWCC | 1 cut(s) | 452 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BalI | TGGCCA | 1 cut(s) | 552 |
| BanI | GGYRCC | 1 cut(s) | 405 |
| BanII | GRGCYC | 1 cut(s) | 688 |
| BauI | CACGAG | 1 cut(s) | 687 |
| BbsI | GAAGAC | 1 cut(s) | 197 |
| Bbv12I | GWGCWC | 1 cut(s) | 688 |
| BccI | CCATC | 3 cut(s) | 63, 217, 591 |
| BciVI | GTATCC | 1 cut(s) | 427 |
| BclI | TGATCA | 1 cut(s) | 264 |
| BcoDI | GTCTC | 2 cut(s) | 13, 217 |
| BfaI | CTAG | 2 cut(s) | 59, 660 |
| BfmI | CTRYAG | 1 cut(s) | 255 |
| BfoI | RGCGCY | 1 cut(s) | 567 |
| BfuI | GTATCC | 1 cut(s) | 427 |
| Bme18I | GGWCC | 1 cut(s) | 452 |
| BmgT120I | GGNCC | 1 cut(s) | 452 |
| BmiI | GGNNCC | 1 cut(s) | 407 |
| BmsI | GCATC | 1 cut(s) | 625 |
| BpiI | GAAGAC | 1 cut(s) | 197 |
| BsaI | GGTCTC | 1 cut(s) | 13 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 401 |
| BseGI | GGATG | 1 cut(s) | 321 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 401 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| BshFI | GGCC | 1 cut(s) | 552 |
| BshNI | GGYRCC | 1 cut(s) | 405 |
| BsiHKAI | GWGCWC | 1 cut(s) | 688 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 401 |
| BsmAI | GTCTC | 2 cut(s) | 13, 217 |
| BsmBI | CGTCTC | 1 cut(s) | 217 |
| BsnI | GGCC | 1 cut(s) | 552 |
| Bso31I | GGTCTC | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 2 cut(s) | 673, 688 |
| Bsp143I | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| BspACI | CCGC | 3 cut(s) | 82, 484, 705 |
| BspANI | GGCC | 1 cut(s) | 552 |
| BspCNI | CTCAG | 1 cut(s) | 131 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 1 cut(s) | 407 |
| BspMAI | CTGCAG | 1 cut(s) | 259 |
| BspPI | GGATC | 1 cut(s) | 342 |
| BspQI | GCTCTTC | 1 cut(s) | 303 |
| BspT107I | GGYRCC | 1 cut(s) | 405 |
| BspTNI | GGTCTC | 1 cut(s) | 13 |
| BssMI | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| BssSI | CACGAG | 1 cut(s) | 687 |
| Bst2BI | CACGAG | 1 cut(s) | 687 |
| Bst6I | CTCTTC | 2 cut(s) | 303, 505 |
| BstDEI | CTNAG | 5 cut(s) | 118, 231, 396, 428, 576 |
| BstEII | GGTNACC | 1 cut(s) | 479 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 399 |
| BstF5I | GGATG | 1 cut(s) | 321 |
| BstH2I | RGCGCY | 1 cut(s) | 567 |
| BstHHI | GCGC | 1 cut(s) | 566 |
| BstKTI | GATC | 5 cut(s) | 168, 267, 283, 350, 760 |
| BstMAI | GTCTC | 2 cut(s) | 13, 217 |
| BstMBI | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 713, 734 |
| BstNSI | RCATGY | 1 cut(s) | 642 |
| BstPI | GGTNACC | 1 cut(s) | 479 |
| BstSFI | CTRYAG | 1 cut(s) | 255 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstV2I | GAAGAC | 1 cut(s) | 197 |
| BstX2I | RGATCY | 1 cut(s) | 347 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| BstYI | RGATCY | 1 cut(s) | 347 |
| BsuI | GTATCC | 1 cut(s) | 427 |
| BsuRI | GGCC | 1 cut(s) | 552 |
| BtsCI | GGATG | 1 cut(s) | 321 |
| CciI | TCATGA | 1 cut(s) | 277 |
| CfoI | GCGC | 1 cut(s) | 566 |
| Cfr13I | GGNCC | 1 cut(s) | 452 |
| CviAII | CATG | 4 cut(s) | 278, 314, 554, 639 |
| CviJI | RGCY | 8 cut(s) | 78, 293, 364, 552, 582, 605, 686, 737 |
| CviKI_1 | RGCY | 8 cut(s) | 78, 293, 364, 552, 582, 605, 686, 737 |
| DdeI | CTNAG | 5 cut(s) | 118, 231, 396, 428, 576 |
| DpnI | GATC | 5 cut(s) | 167, 266, 282, 349, 759 |
| DpnII | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| DraIII | CACNNNGTG | 1 cut(s) | 745 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 450 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 450 |
| EaeI | YGGCCR | 1 cut(s) | 550 |
| Eam1104I | CTCTTC | 2 cut(s) | 303, 505 |
| EarI | CTCTTC | 2 cut(s) | 303, 505 |
| Ecl136II | GAGCTC | 1 cut(s) | 686 |
| Eco24I | GRGCYC | 1 cut(s) | 688 |
| Eco31I | GGTCTC | 1 cut(s) | 13 |
| Eco47I | GGWCC | 1 cut(s) | 452 |
| Eco53kI | GAGCTC | 1 cut(s) | 686 |
| Eco57I | CTGAAG | 1 cut(s) | 327 |
| Eco91I | GGTNACC | 1 cut(s) | 479 |
| EcoICRI | GAGCTC | 1 cut(s) | 686 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 399 |
| EcoO65I | GGTNACC | 1 cut(s) | 479 |
| EcoT22I | ATGCAT | 1 cut(s) | 640 |
| EcoT38I | GRGCYC | 1 cut(s) | 688 |
| Esp3I | CGTCTC | 1 cut(s) | 217 |
| FaeI | CATG | 4 cut(s) | 281, 317, 557, 642 |
| FatI | CATG | 4 cut(s) | 277, 313, 553, 638 |
| FbaI | TGATCA | 1 cut(s) | 264 |
| FokI | GGATG | 1 cut(s) | 308 |
| FriOI | GRGCYC | 1 cut(s) | 688 |
| FspBI | CTAG | 2 cut(s) | 59, 660 |
| GlaI | GCGC | 1 cut(s) | 565 |
| HaeII | RGCGCY | 1 cut(s) | 567 |
| HaeIII | GGCC | 1 cut(s) | 552 |
| HhaI | GCGC | 1 cut(s) | 566 |
| Hin1II | CATG | 4 cut(s) | 281, 317, 557, 642 |
| Hin6I | GCGC | 1 cut(s) | 564 |
| HinP1I | GCGC | 1 cut(s) | 564 |
| HincII | GTYRAC | 1 cut(s) | 518 |
| HindII | GTYRAC | 1 cut(s) | 518 |
| HinfI | GANTC | 3 cut(s) | 41, 193, 374 |
| HphI | GGTGA | 1 cut(s) | 694 |
| Hpy166II | GTNNAC | 1 cut(s) | 518 |
| Hpy188I | TCNGA | 2 cut(s) | 121, 625 |
| Hpy188III | TCNNGA | 7 cut(s) | 53, 107, 278, 345, 371, 645, 689 |
| Hpy8I | GTNNAC | 1 cut(s) | 518 |
| HpyAV | CCTTC | 2 cut(s) | 214, 470 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 445, 520 |
| HpyCH4V | TGCA | 3 cut(s) | 218, 257, 638 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 713, 734 |
| HpyF3I | CTNAG | 5 cut(s) | 118, 231, 396, 428, 576 |
| HpySE526I | ACGT | 3 cut(s) | 33, 445, 520 |
| Hsp92II | CATG | 4 cut(s) | 281, 317, 557, 642 |
| HspAI | GCGC | 1 cut(s) | 564 |
| Ksp22I | TGATCA | 1 cut(s) | 264 |
| Kzo9I | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| LguI | GCTCTTC | 1 cut(s) | 303 |
| LmnI | GCTCC | 2 cut(s) | 290, 625 |
| LpnPI | CCDG | 6 cut(s) | 59, 66, 243, 384, 435, 534 |
| LweI | GCATC | 1 cut(s) | 625 |
| MaeI | CTAG | 2 cut(s) | 59, 660 |
| MaeII | ACGT | 3 cut(s) | 33, 445, 520 |
| MaeIII | GTNAC | 5 cut(s) | 38, 226, 250, 386, 479 |
| MalI | GATC | 5 cut(s) | 167, 266, 282, 349, 759 |
| MboI | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| MboII | GAAGA | 5 cut(s) | 202, 320, 343, 522, 704 |
| MflI | RGATCY | 1 cut(s) | 347 |
| MhlI | GDGCHC | 2 cut(s) | 673, 688 |
| MlsI | TGGCCA | 1 cut(s) | 552 |
| MluCI | AATT | 5 cut(s) | 149, 243, 340, 379, 696 |
| MluNI | TGGCCA | 1 cut(s) | 552 |
| MlyI | GAGTC | 2 cut(s) | 35, 187 |
| MmeI | TCCRAC | 2 cut(s) | 268, 603 |
| MnlI | CCTC | 7 cut(s) | 89, 395, 506, 526, 530, 556, 618 |
| Mox20I | TGGCCA | 1 cut(s) | 552 |
| Mph1103I | ATGCAT | 1 cut(s) | 640 |
| MroXI | GAANNNNTTC | 1 cut(s) | 126 |
| MscI | TGGCCA | 1 cut(s) | 552 |
| MseI | TTAA | 2 cut(s) | 135, 143 |
| MslI | CAYNNNNRTG | 3 cut(s) | 326, 558, 588 |
| Msp20I | TGGCCA | 1 cut(s) | 552 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 713, 734 |
| NdeII | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| NlaIII | CATG | 4 cut(s) | 281, 317, 557, 642 |
| NlaIV | GGNNCC | 1 cut(s) | 407 |
| NmuCI | GTSAC | 2 cut(s) | 38, 386 |
| NsiI | ATGCAT | 1 cut(s) | 640 |
| NspI | RCATGY | 1 cut(s) | 642 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PciSI | GCTCTTC | 1 cut(s) | 303 |
| PdmI | GAANNNNTTC | 1 cut(s) | 126 |
| PfeI | GAWTC | 1 cut(s) | 374 |
| PleI | GAGTC | 2 cut(s) | 35, 187 |
| PpsI | GAGTC | 2 cut(s) | 35, 187 |
| Psp124BI | GAGCTC | 1 cut(s) | 688 |
| PspEI | GGTNACC | 1 cut(s) | 479 |
| PspN4I | GGNNCC | 1 cut(s) | 407 |
| PspPI | GGNCC | 1 cut(s) | 452 |
| PstI | CTGCAG | 1 cut(s) | 259 |
| PsuI | RGATCY | 1 cut(s) | 347 |
| RseI | CAYNNNNRTG | 3 cut(s) | 326, 558, 588 |
| SacI | GAGCTC | 1 cut(s) | 688 |
| SapI | GCTCTTC | 1 cut(s) | 303 |
| SaqAI | TTAA | 2 cut(s) | 135, 143 |
| Sau3AI | GATC | 5 cut(s) | 165, 264, 280, 347, 757 |
| Sau96I | GGNCC | 1 cut(s) | 452 |
| SchI | GAGTC | 2 cut(s) | 35, 187 |
| SduI | GDGCHC | 2 cut(s) | 673, 688 |
| SfaNI | GCATC | 1 cut(s) | 625 |
| SfcI | CTRYAG | 1 cut(s) | 255 |
| SinI | GGWCC | 1 cut(s) | 452 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 326, 558, 588 |
| Sse9I | AATT | 5 cut(s) | 149, 243, 340, 379, 696 |
| SsiI | CCGC | 3 cut(s) | 82, 484, 705 |
| SspMI | CTAG | 2 cut(s) | 59, 660 |
| SstI | GAGCTC | 1 cut(s) | 688 |
| TaiI | ACGT | 3 cut(s) | 36, 448, 523 |
| TaqI | TCGA | 3 cut(s) | 241, 344, 646 |
| TasI | AATT | 5 cut(s) | 149, 243, 340, 379, 696 |
| TfiI | GAWTC | 1 cut(s) | 374 |
| Tru1I | TTAA | 2 cut(s) | 135, 143 |
| Tru9I | TTAA | 2 cut(s) | 135, 143 |
| TseFI | GTSAC | 2 cut(s) | 38, 386 |
| Tsp45I | GTSAC | 2 cut(s) | 38, 386 |
| TspDTI | ATGAA | 3 cut(s) | 266, 311, 632 |
| TspGWI | ACGGA | 3 cut(s) | 26, 161, 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 452 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 399 |
| XapI | RAATTY | 1 cut(s) | 696 |
| XceI | RCATGY | 1 cut(s) | 642 |
| XmnI | GAANNNNTTC | 1 cut(s) | 126 |
| XspI | CTAG | 2 cut(s) | 59, 660 |
| Zsp2I | ATGCAT | 1 cut(s) | 640 |