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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 295 |
| AfaI | GTAC | 1 cut(s) | 326 |
| AgsI | TTSAA | 1 cut(s) | 310 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 218 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AjnI | CCWGG | 1 cut(s) | 63 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 222, 254 |
| AluBI | AGCT | 4 cut(s) | 89, 95, 496, 506 |
| AluI | AGCT | 4 cut(s) | 89, 95, 496, 506 |
| Alw21I | GWGCWC | 1 cut(s) | 498 |
| Alw26I | GTCTC | 2 cut(s) | 226, 430 |
| AoxI | GGCC | 1 cut(s) | 284 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 339 |
| BanII | GRGCYC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 2 cut(s) | 207, 410 |
| Bbv12I | GWGCWC | 1 cut(s) | 498 |
| BccI | CCATC | 3 cut(s) | 149, 276, 430 |
| BciT130I | CCWGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 2 cut(s) | 226, 430 |
| BfaI | CTAG | 2 cut(s) | 272, 288 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 218 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BpiI | GAAGAC | 2 cut(s) | 207, 410 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 314, 346 |
| BpuEI | CTTGAG | 2 cut(s) | 75, 341 |
| Bsa29I | ATCGAT | 1 cut(s) | 459 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| Bse3DI | GCAATG | 1 cut(s) | 396 |
| BseBI | CCWGG | 1 cut(s) | 65 |
| BseCI | ATCGAT | 1 cut(s) | 459 |
| BseGI | GGATG | 3 cut(s) | 144, 172, 534 |
| BseMI | GCAATG | 1 cut(s) | 396 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BshFI | GGCC | 1 cut(s) | 286 |
| BshVI | ATCGAT | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 1 cut(s) | 498 |
| BsmAI | GTCTC | 2 cut(s) | 226, 430 |
| BsmBI | CGTCTC | 1 cut(s) | 430 |
| BsnI | GGCC | 1 cut(s) | 286 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 1 cut(s) | 498 |
| Bsp143I | GATC | 1 cut(s) | 378 |
| BspACI | CCGC | 1 cut(s) | 295 |
| BspANI | GGCC | 1 cut(s) | 286 |
| BspDI | ATCGAT | 1 cut(s) | 459 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrDI | GCAATG | 1 cut(s) | 396 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssMI | GATC | 1 cut(s) | 378 |
| Bst2UI | CCWGG | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 1 cut(s) | 216 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 2 cut(s) | 118, 444 |
| BstF5I | GGATG | 3 cut(s) | 144, 172, 534 |
| BstKTI | GATC | 1 cut(s) | 381 |
| BstMAI | GTCTC | 2 cut(s) | 226, 430 |
| BstMBI | GATC | 1 cut(s) | 378 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 131 |
| BstNI | CCWGG | 1 cut(s) | 65 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstV2I | GAAGAC | 2 cut(s) | 207, 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 286 |
| BsuTUI | ATCGAT | 1 cut(s) | 459 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsCI | GGATG | 3 cut(s) | 144, 172, 534 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CciI | TCATGA | 1 cut(s) | 490 |
| ClaI | ATCGAT | 1 cut(s) | 459 |
| Csp6I | GTAC | 1 cut(s) | 325 |
| CviAII | CATG | 2 cut(s) | 491, 527 |
| CviJI | RGCY | 8 cut(s) | 63, 89, 95, 116, 286, 291, 496, 506 |
| CviKI_1 | RGCY | 8 cut(s) | 63, 89, 95, 116, 286, 291, 496, 506 |
| CviQI | GTAC | 1 cut(s) | 325 |
| DdeI | CTNAG | 2 cut(s) | 118, 444 |
| DpnI | GATC | 1 cut(s) | 380 |
| DpnII | GATC | 1 cut(s) | 378 |
| DriI | GACNNNNNGTC | 1 cut(s) | 218 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 218 |
| Ecl136II | GAGCTC | 1 cut(s) | 496 |
| Eco24I | GRGCYC | 1 cut(s) | 498 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| Eco53kI | GAGCTC | 1 cut(s) | 496 |
| EcoICRI | GAGCTC | 1 cut(s) | 496 |
| EcoRII | CCWGG | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 1 cut(s) | 498 |
| Esp3I | CGTCTC | 1 cut(s) | 430 |
| FaeI | CATG | 2 cut(s) | 494, 530 |
| FatI | CATG | 2 cut(s) | 490, 526 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| FokI | GGATG | 3 cut(s) | 131, 179, 521 |
| FriOI | GRGCYC | 1 cut(s) | 498 |
| FspBI | CTAG | 2 cut(s) | 272, 288 |
| HaeIII | GGCC | 1 cut(s) | 286 |
| Hin1II | CATG | 2 cut(s) | 494, 530 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 6 cut(s) | 154, 170, 254, 406, 456, 477 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 334 |
| Hpy188III | TCNNGA | 3 cut(s) | 266, 320, 491 |
| HpyCH4III | ACNGT | 1 cut(s) | 216 |
| HpyCH4IV | ACGT | 2 cut(s) | 69, 246 |
| HpyCH4V | TGCA | 2 cut(s) | 389, 431 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 131 |
| HpyF3I | CTNAG | 2 cut(s) | 118, 444 |
| HpySE526I | ACGT | 2 cut(s) | 69, 246 |
| Hsp92II | CATG | 2 cut(s) | 494, 530 |
| Kzo9I | GATC | 1 cut(s) | 378 |
| LmnI | GCTCC | 2 cut(s) | 34, 503 |
| LpnPI | CCDG | 7 cut(s) | 23, 50, 77, 191, 220, 272, 279 |
| MaeI | CTAG | 2 cut(s) | 272, 288 |
| MaeII | ACGT | 2 cut(s) | 69, 246 |
| MaeIII | GTNAC | 3 cut(s) | 5, 251, 463 |
| MalI | GATC | 1 cut(s) | 380 |
| MboI | GATC | 1 cut(s) | 378 |
| MboII | GAAGA | 5 cut(s) | 209, 212, 242, 415, 556 |
| MhlI | GDGCHC | 1 cut(s) | 498 |
| MluCI | AATT | 3 cut(s) | 17, 362, 553 |
| MlyI | GAGTC | 3 cut(s) | 148, 248, 400 |
| MnlI | CCTC | 3 cut(s) | 115, 302, 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 339 |
| MseI | TTAA | 2 cut(s) | 348, 356 |
| MslI | CAYNNNNRTG | 4 cut(s) | 149, 165, 180, 539 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 131 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 1 cut(s) | 378 |
| NlaIII | CATG | 2 cut(s) | 494, 530 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 3 cut(s) | 170, 456, 477 |
| PleI | GAGTC | 3 cut(s) | 148, 248, 400 |
| PpsI | GAGTC | 3 cut(s) | 148, 248, 400 |
| Psp124BI | GAGCTC | 1 cut(s) | 498 |
| Psp6I | CCWGG | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 63 |
| RsaI | GTAC | 1 cut(s) | 326 |
| RsaNI | GTAC | 1 cut(s) | 325 |
| RseI | CAYNNNNRTG | 4 cut(s) | 149, 165, 180, 539 |
| SacI | GAGCTC | 1 cut(s) | 498 |
| SaqAI | TTAA | 2 cut(s) | 348, 356 |
| Sau3AI | GATC | 1 cut(s) | 378 |
| SchI | GAGTC | 3 cut(s) | 148, 248, 400 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 498 |
| SetI | ASST | 9 cut(s) | 12, 72, 91, 97, 249, 273, 488, 498, 508 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 149, 165, 180, 539 |
| SmlI | CTYRAG | 2 cut(s) | 90, 320 |
| SmoI | CTYRAG | 2 cut(s) | 90, 320 |
| Sse9I | AATT | 3 cut(s) | 17, 362, 553 |
| SsiI | CCGC | 1 cut(s) | 295 |
| SspMI | CTAG | 2 cut(s) | 272, 288 |
| SstI | GAGCTC | 1 cut(s) | 498 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| TaaI | ACNGT | 1 cut(s) | 216 |
| TaiI | ACGT | 2 cut(s) | 72, 249 |
| TaqI | TCGA | 3 cut(s) | 228, 454, 459 |
| TasI | AATT | 3 cut(s) | 17, 362, 553 |
| TatI | WGTACW | 1 cut(s) | 324 |
| TfiI | GAWTC | 3 cut(s) | 170, 456, 477 |
| Tru1I | TTAA | 2 cut(s) | 348, 356 |
| Tru9I | TTAA | 2 cut(s) | 348, 356 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 5 cut(s) | 206, 210, 479, 524, 557 |
| XmnI | GAANNNNTTC | 1 cut(s) | 339 |
| XspI | CTAG | 2 cut(s) | 272, 288 |