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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 510 |
| AccB1I | GGYRCC | 2 cut(s) | 22, 665 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AciI | CCGC | 2 cut(s) | 475, 544 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AcvI | CACGTG | 2 cut(s) | 566, 584 |
| AcyI | GRCGYC | 1 cut(s) | 666 |
| AdeI | CACNNNGTG | 1 cut(s) | 569 |
| AfaI | GTAC | 1 cut(s) | 307 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 585, 614 |
| AflIII | ACRYGT | 2 cut(s) | 563, 581 |
| AgsI | TTSAA | 4 cut(s) | 124, 131, 160, 408 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 245, 277 |
| AluBI | AGCT | 6 cut(s) | 64, 76, 244, 346, 368, 632 |
| AluI | AGCT | 6 cut(s) | 64, 76, 244, 346, 368, 632 |
| AoxI | GGCC | 1 cut(s) | 410 |
| AspA2I | CCTAGG | 2 cut(s) | 482, 677 |
| AspLEI | GCGC | 4 cut(s) | 147, 468, 647, 668 |
| AspS9I | GGNCC | 2 cut(s) | 411, 512 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| AvrII | CCTAGG | 2 cut(s) | 482, 677 |
| BanI | GGYRCC | 2 cut(s) | 22, 665 |
| BauI | CACGAG | 2 cut(s) | 389, 633 |
| BbrPI | CACGTG | 2 cut(s) | 566, 584 |
| BfaI | CTAG | 3 cut(s) | 77, 483, 678 |
| BfoI | RGCGCY | 2 cut(s) | 648, 669 |
| BlnI | CCTAGG | 2 cut(s) | 482, 677 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 512 |
| BmiI | GGNNCC | 6 cut(s) | 24, 479, 513, 625, 667, 684 |
| BsaAI | YACGTR | 2 cut(s) | 566, 584 |
| BsaHI | GRCGYC | 1 cut(s) | 666 |
| BsaJI | CCNNGG | 3 cut(s) | 482, 613, 677 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 245, 275, 580, 610 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 585, 614 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| BseDI | CCNNGG | 3 cut(s) | 482, 613, 677 |
| BseGI | GGATG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 585, 614 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BshFI | GGCC | 1 cut(s) | 412 |
| BshNI | GGYRCC | 2 cut(s) | 22, 665 |
| BslFI | GGGAC | 2 cut(s) | 507, 516 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 585, 614 |
| BsmFI | GGGAC | 2 cut(s) | 507, 516 |
| BsnI | GGCC | 1 cut(s) | 412 |
| Bsp143I | GATC | 1 cut(s) | 45 |
| BspACI | CCGC | 2 cut(s) | 475, 544 |
| BspANI | GGCC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 6 cut(s) | 24, 479, 513, 625, 667, 684 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 2 cut(s) | 22, 665 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 3 cut(s) | 482, 613, 677 |
| BssMI | GATC | 1 cut(s) | 45 |
| BssNI | GRCGYC | 1 cut(s) | 666 |
| BssSI | CACGAG | 2 cut(s) | 389, 633 |
| BssT1I | CCWWGG | 2 cut(s) | 482, 677 |
| Bst2BI | CACGAG | 2 cut(s) | 389, 633 |
| Bst4CI | ACNGT | 1 cut(s) | 305 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 1 cut(s) | 666 |
| BstBAI | YACGTR | 2 cut(s) | 566, 584 |
| BstDEI | CTNAG | 2 cut(s) | 369, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 613 |
| BstF5I | GGATG | 1 cut(s) | 58 |
| BstH2I | RGCGCY | 2 cut(s) | 648, 669 |
| BstHHI | GCGC | 4 cut(s) | 147, 468, 647, 668 |
| BstKTI | GATC | 1 cut(s) | 48 |
| BstMBI | GATC | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| BsuRI | GGCC | 1 cut(s) | 412 |
| BtgI | CCRYGG | 1 cut(s) | 613 |
| BtgZI | GCGATG | 1 cut(s) | 19 |
| BtsCI | GGATG | 1 cut(s) | 58 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 4 cut(s) | 147, 468, 647, 668 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 512 |
| CseI | GACGC | 1 cut(s) | 194 |
| Csp6I | GTAC | 1 cut(s) | 306 |
| CviAII | CATG | 3 cut(s) | 377, 434, 497 |
| CviJI | RGCY | 9 cut(s) | 64, 76, 244, 281, 346, 368, 412, 626, 632 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 76, 244, 281, 346, 368, 412, 626, 632 |
| CviQI | GTAC | 1 cut(s) | 306 |
| DdeI | CTNAG | 2 cut(s) | 369, 423 |
| DinI | GGCGCC | 1 cut(s) | 667 |
| DpnI | GATC | 1 cut(s) | 47 |
| DpnII | GATC | 1 cut(s) | 45 |
| DraIII | CACNNNGTG | 1 cut(s) | 569 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 510 |
| DriI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 510 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco130I | CCWWGG | 2 cut(s) | 482, 677 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco72I | CACGTG | 2 cut(s) | 566, 584 |
| EcoT14I | CCWWGG | 2 cut(s) | 482, 677 |
| EgeI | GGCGCC | 1 cut(s) | 667 |
| EheI | GGCGCC | 1 cut(s) | 667 |
| ErhI | CCWWGG | 2 cut(s) | 482, 677 |
| FaeI | CATG | 3 cut(s) | 380, 437, 500 |
| FaqI | GGGAC | 2 cut(s) | 507, 516 |
| FatI | CATG | 3 cut(s) | 376, 433, 496 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 65 |
| FspBI | CTAG | 3 cut(s) | 77, 483, 678 |
| GlaI | GCGC | 4 cut(s) | 146, 467, 646, 667 |
| HaeII | RGCGCY | 2 cut(s) | 648, 669 |
| HaeIII | GGCC | 1 cut(s) | 412 |
| HgaI | GACGC | 1 cut(s) | 194 |
| HhaI | GCGC | 4 cut(s) | 147, 468, 647, 668 |
| Hin1I | GRCGYC | 1 cut(s) | 666 |
| Hin1II | CATG | 3 cut(s) | 380, 437, 500 |
| Hin6I | GCGC | 4 cut(s) | 145, 466, 645, 666 |
| HinP1I | GCGC | 4 cut(s) | 145, 466, 645, 666 |
| HinfI | GANTC | 3 cut(s) | 104, 213, 327 |
| Hpy188I | TCNGA | 1 cut(s) | 184 |
| Hpy188III | TCNNGA | 3 cut(s) | 391, 434, 533 |
| HpyAV | CCTTC | 3 cut(s) | 118, 277, 530 |
| HpyCH4III | ACNGT | 1 cut(s) | 305 |
| HpyCH4IV | ACGT | 3 cut(s) | 505, 565, 583 |
| HpyCH4V | TGCA | 1 cut(s) | 452 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| HpyF3I | CTNAG | 2 cut(s) | 369, 423 |
| HpySE526I | ACGT | 3 cut(s) | 505, 565, 583 |
| Hsp92I | GRCGYC | 1 cut(s) | 666 |
| Hsp92II | CATG | 3 cut(s) | 380, 437, 500 |
| HspAI | GCGC | 4 cut(s) | 145, 466, 645, 666 |
| KasI | GGCGCC | 1 cut(s) | 665 |
| Kzo9I | GATC | 1 cut(s) | 45 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 2 cut(s) | 472, 623 |
| LpnPI | CCDG | 5 cut(s) | 40, 129, 240, 306, 518 |
| MaeI | CTAG | 3 cut(s) | 77, 483, 678 |
| MaeII | ACGT | 3 cut(s) | 505, 565, 583 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 1 cut(s) | 47 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 1 cut(s) | 45 |
| MboII | GAAGA | 3 cut(s) | 92, 182, 569 |
| MluCI | AATT | 5 cut(s) | 178, 246, 397, 403, 442 |
| Mly113I | GGCGCC | 1 cut(s) | 666 |
| MnlI | CCTC | 8 cut(s) | 119, 122, 387, 430, 455, 584, 656, 684 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| NarI | GGCGCC | 1 cut(s) | 666 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 1 cut(s) | 45 |
| NlaIII | CATG | 3 cut(s) | 380, 437, 500 |
| NlaIV | GGNNCC | 6 cut(s) | 24, 479, 513, 625, 667, 684 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PfeI | GAWTC | 3 cut(s) | 104, 213, 327 |
| PluTI | GGCGCC | 1 cut(s) | 669 |
| PmaCI | CACGTG | 2 cut(s) | 566, 584 |
| PmlI | CACGTG | 2 cut(s) | 566, 584 |
| Ppu21I | YACGTR | 2 cut(s) | 566, 584 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| PspCI | CACGTG | 2 cut(s) | 566, 584 |
| PspN4I | GGNNCC | 6 cut(s) | 24, 479, 513, 625, 667, 684 |
| PspPI | GGNCC | 2 cut(s) | 411, 512 |
| RsaI | GTAC | 1 cut(s) | 307 |
| RsaNI | GTAC | 1 cut(s) | 306 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| Sau3AI | GATC | 1 cut(s) | 45 |
| Sau96I | GGNCC | 2 cut(s) | 411, 512 |
| SfoI | GGCGCC | 1 cut(s) | 667 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| Sse9I | AATT | 5 cut(s) | 178, 246, 397, 403, 442 |
| SsiI | CCGC | 2 cut(s) | 475, 544 |
| SspDI | GGCGCC | 1 cut(s) | 665 |
| SspMI | CTAG | 3 cut(s) | 77, 483, 678 |
| StyI | CCWWGG | 2 cut(s) | 482, 677 |
| TaaI | ACNGT | 1 cut(s) | 305 |
| TaiI | ACGT | 3 cut(s) | 508, 568, 586 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 5 cut(s) | 178, 246, 397, 403, 442 |
| TfiI | GAWTC | 3 cut(s) | 104, 213, 327 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 3 cut(s) | 69, 329, 422 |
| TspGWI | ACGGA | 1 cut(s) | 602 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XmaJI | CCTAGG | 2 cut(s) | 482, 677 |
| XspI | CTAG | 3 cut(s) | 77, 483, 678 |