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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 2 cut(s) | 149, 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Alw26I | GTCTC | 1 cut(s) | 362 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AspS9I | GGNCC | 1 cut(s) | 286 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 286 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 92, 342 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 362 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 286 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 286 |
| BmiI | GGNNCC | 2 cut(s) | 287, 288 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 141, 227 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 2 cut(s) | 272, 299 |
| BsmAI | GTCTC | 1 cut(s) | 362 |
| BsmFI | GGGAC | 2 cut(s) | 272, 299 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspLI | GGNNCC | 2 cut(s) | 287, 288 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstMAI | GTCTC | 1 cut(s) | 362 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cfr13I | GGNCC | 1 cut(s) | 286 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviJI | RGCY | 7 cut(s) | 48, 95, 124, 129, 155, 161, 182 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 95, 124, 129, 155, 161, 182 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 286 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoO109I | RGGNCCY | 1 cut(s) | 286 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| FaiI | YATR | 6 cut(s) | 60, 113, 228, 230, 257, 354 |
| FaqI | GGGAC | 2 cut(s) | 272, 299 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 220, 236, 320 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy188III | TCNNGA | 5 cut(s) | 51, 71, 106, 119, 332 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| KflI | GGGWCCC | 1 cut(s) | 286 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MboII | GAAGA | 3 cut(s) | 275, 278, 308 |
| MluCI | AATT | 1 cut(s) | 17 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIV | GGNNCC | 2 cut(s) | 287, 288 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| PpuMI | RGGWCCY | 1 cut(s) | 286 |
| Psp5II | RGGWCCY | 1 cut(s) | 286 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 287, 288 |
| PspPI | GGNCC | 1 cut(s) | 286 |
| PspPPI | RGGWCCY | 1 cut(s) | 286 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 1 cut(s) | 286 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 286 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| Sse9I | AATT | 1 cut(s) | 17 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 2 cut(s) | 120, 294 |
| TasI | AATT | 1 cut(s) | 17 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| VpaK11BI | GGWCC | 1 cut(s) | 286 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 2 cut(s) | 126, 338 |